Experiment: KB with Berberine 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4791 and Psyr_4792 are separated by 83 nucleotides Psyr_4792 and Psyr_4793 are separated by 258 nucleotides
Psyr_4791: Psyr_4791 - D-erythrose-4-phosphate dehydrogenase, at 5,678,341 to 5,679,384
_4791
Psyr_4792: Psyr_4792 - transketolase, at 5,679,468 to 5,681,465
_4792
Psyr_4793: Psyr_4793 - transcriptional regulator, ArsR family, at 5,681,724 to 5,682,719
_4793
Position (kb) 5679
5680
5681
5682 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5678.623 kb on - strand, within Psyr_4791 at 5678.623 kb on - strand, within Psyr_4791 at 5679.174 kb on - strand, within Psyr_4791 at 5679.366 kb on - strand at 5679.366 kb on - strand at 5679.462 kb on - strand at 5679.462 kb on - strand at 5679.462 kb on - strand at 5679.462 kb on - strand at 5679.462 kb on - strand at 5679.462 kb on - strand at 5679.462 kb on - strand at 5679.462 kb on - strand at 5679.462 kb on - strand at 5681.485 kb on - strand at 5681.492 kb on - strand at 5681.492 kb on - strand at 5681.550 kb on - strand at 5681.560 kb on - strand at 5681.586 kb on + strand at 5681.586 kb on + strand at 5681.586 kb on + strand at 5681.586 kb on + strand at 5681.587 kb on - strand at 5681.587 kb on - strand at 5681.587 kb on - strand at 5681.710 kb on + strand at 5681.710 kb on + strand at 5681.710 kb on + strand at 5681.723 kb on + strand at 5681.723 kb on + strand at 5681.723 kb on + strand at 5681.723 kb on + strand at 5681.723 kb on + strand at 5681.723 kb on + strand at 5681.723 kb on + strand at 5681.737 kb on + strand at 5681.737 kb on + strand at 5682.055 kb on + strand, within Psyr_4793 at 5682.055 kb on + strand, within Psyr_4793 at 5682.055 kb on + strand, within Psyr_4793 at 5682.055 kb on + strand, within Psyr_4793 at 5682.055 kb on + strand, within Psyr_4793 at 5682.055 kb on + strand, within Psyr_4793 at 5682.171 kb on + strand, within Psyr_4793 at 5682.171 kb on + strand, within Psyr_4793 at 5682.238 kb on + strand, within Psyr_4793 at 5682.238 kb on + strand, within Psyr_4793
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Berberine 250 ug/ml remove 5,678,623 - Psyr_4791 0.27 +0.9 5,678,623 - Psyr_4791 0.27 +0.9 5,679,174 - Psyr_4791 0.80 -0.1 5,679,366 - +0.8 5,679,366 - -1.1 5,679,462 - -1.2 5,679,462 - +0.4 5,679,462 - +0.9 5,679,462 - +1.1 5,679,462 - +0.9 5,679,462 - +0.5 5,679,462 - -0.4 5,679,462 - +0.1 5,679,462 - -2.2 5,681,485 - +1.4 5,681,492 - -0.6 5,681,492 - -1.0 5,681,550 - -0.2 5,681,560 - +1.9 5,681,586 + -0.5 5,681,586 + -1.0 5,681,586 + -0.4 5,681,586 + -0.1 5,681,587 - -0.3 5,681,587 - -0.0 5,681,587 - +0.8 5,681,710 + -0.3 5,681,710 + +0.6 5,681,710 + +0.2 5,681,723 + +0.2 5,681,723 + +1.8 5,681,723 + +1.2 5,681,723 + -1.4 5,681,723 + +0.8 5,681,723 + +0.4 5,681,723 + -0.8 5,681,737 + -0.2 5,681,737 + +0.1 5,682,055 + Psyr_4793 0.33 -0.2 5,682,055 + Psyr_4793 0.33 -0.4 5,682,055 + Psyr_4793 0.33 -2.1 5,682,055 + Psyr_4793 0.33 +0.2 5,682,055 + Psyr_4793 0.33 -0.3 5,682,055 + Psyr_4793 0.33 -0.5 5,682,171 + Psyr_4793 0.45 -0.8 5,682,171 + Psyr_4793 0.45 -0.6 5,682,238 + Psyr_4793 0.52 +0.6 5,682,238 + Psyr_4793 0.52 -0.3
Or see this region's nucleotide sequence