Experiment: KB with Berberine 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4616 and Psyr_4617 overlap by 1 nucleotides Psyr_4617 and Psyr_4618 are separated by 177 nucleotides Psyr_4618 and Psyr_4619 overlap by 4 nucleotides
Psyr_4616: Psyr_4616 - Integrase, catalytic region, at 5,474,547 to 5,475,383
_4616
Psyr_4617: Psyr_4617 - ISPsy9, transposase OrfA, at 5,475,383 to 5,475,922
_4617
Psyr_4618: Psyr_4618 - regulatory protein, LuxR:Response regulator receiver, at 5,476,100 to 5,476,729
_4618
Psyr_4619: Psyr_4619 - multi-sensor signal transduction histidine kinase, at 5,476,726 to 5,478,738
_4619
Position (kb) 5476
5477 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5476.055 kb on + strand at 5476.055 kb on + strand at 5476.055 kb on + strand at 5476.055 kb on + strand at 5476.055 kb on + strand at 5476.055 kb on + strand at 5476.126 kb on - strand at 5476.126 kb on - strand at 5476.126 kb on - strand at 5476.359 kb on + strand, within Psyr_4618 at 5476.360 kb on - strand, within Psyr_4618 at 5476.360 kb on - strand, within Psyr_4618 at 5476.423 kb on + strand, within Psyr_4618 at 5476.568 kb on - strand, within Psyr_4618 at 5476.764 kb on + strand at 5476.766 kb on + strand at 5476.766 kb on + strand at 5476.766 kb on + strand at 5476.766 kb on + strand at 5476.766 kb on + strand at 5476.767 kb on - strand at 5476.767 kb on - strand at 5476.767 kb on - strand at 5476.767 kb on - strand at 5476.767 kb on - strand at 5476.767 kb on - strand at 5477.331 kb on + strand, within Psyr_4619 at 5477.383 kb on + strand, within Psyr_4619 at 5477.383 kb on + strand, within Psyr_4619 at 5477.384 kb on - strand, within Psyr_4619 at 5477.438 kb on + strand, within Psyr_4619 at 5477.439 kb on - strand, within Psyr_4619 at 5477.439 kb on - strand, within Psyr_4619 at 5477.439 kb on - strand, within Psyr_4619 at 5477.439 kb on - strand, within Psyr_4619 at 5477.439 kb on - strand, within Psyr_4619 at 5477.439 kb on - strand, within Psyr_4619 at 5477.639 kb on + strand, within Psyr_4619 at 5477.673 kb on - strand, within Psyr_4619
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Berberine 250 ug/ml remove 5,476,055 + -1.4 5,476,055 + -0.4 5,476,055 + -0.1 5,476,055 + +0.2 5,476,055 + -0.4 5,476,055 + -0.7 5,476,126 - -1.1 5,476,126 - -0.7 5,476,126 - -0.1 5,476,359 + Psyr_4618 0.41 -3.3 5,476,360 - Psyr_4618 0.41 -1.9 5,476,360 - Psyr_4618 0.41 -0.5 5,476,423 + Psyr_4618 0.51 -0.6 5,476,568 - Psyr_4618 0.74 -1.3 5,476,764 + +0.2 5,476,766 + +0.1 5,476,766 + -0.6 5,476,766 + -2.2 5,476,766 + -0.9 5,476,766 + -0.3 5,476,767 - -0.3 5,476,767 - -0.2 5,476,767 - -0.3 5,476,767 - -0.3 5,476,767 - +0.3 5,476,767 - -0.5 5,477,331 + Psyr_4619 0.30 -0.3 5,477,383 + Psyr_4619 0.33 +0.2 5,477,383 + Psyr_4619 0.33 -0.1 5,477,384 - Psyr_4619 0.33 -0.8 5,477,438 + Psyr_4619 0.35 +0.6 5,477,439 - Psyr_4619 0.35 -1.3 5,477,439 - Psyr_4619 0.35 +0.9 5,477,439 - Psyr_4619 0.35 +0.2 5,477,439 - Psyr_4619 0.35 +0.3 5,477,439 - Psyr_4619 0.35 -0.4 5,477,439 - Psyr_4619 0.35 -0.1 5,477,639 + Psyr_4619 0.45 -1.6 5,477,673 - Psyr_4619 0.47 -0.1
Or see this region's nucleotide sequence