Experiment: KB with Berberine 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4600 and Psyr_4601 are separated by 11 nucleotides Psyr_4601 and Psyr_4602 are separated by 272 nucleotides Psyr_4602 and Psyr_4603 are separated by 111 nucleotides
Psyr_4600: Psyr_4600 - Glycoside hydrolase, family 5, at 5,458,494 to 5,459,666
_4600
Psyr_4601: Psyr_4601 - hypothetical protein, at 5,459,678 to 5,459,863
_4601
Psyr_4602: Psyr_4602 - hypothetical protein, at 5,460,136 to 5,460,579
_4602
Psyr_4603: Psyr_4603 - phage repressor protein, Serine peptidase, MEROPS family S24, at 5,460,691 to 5,461,380
_4603
Position (kb) 5459
5460 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5458.747 kb on + strand, within Psyr_4600 at 5458.747 kb on + strand, within Psyr_4600 at 5458.747 kb on + strand, within Psyr_4600 at 5458.747 kb on + strand, within Psyr_4600 at 5458.747 kb on + strand, within Psyr_4600 at 5458.748 kb on - strand, within Psyr_4600 at 5458.748 kb on - strand, within Psyr_4600 at 5458.809 kb on - strand, within Psyr_4600 at 5458.840 kb on + strand, within Psyr_4600 at 5459.003 kb on + strand, within Psyr_4600 at 5459.004 kb on - strand, within Psyr_4600 at 5459.004 kb on - strand, within Psyr_4600 at 5459.004 kb on - strand, within Psyr_4600 at 5459.004 kb on - strand, within Psyr_4600 at 5459.004 kb on - strand, within Psyr_4600 at 5459.020 kb on + strand, within Psyr_4600 at 5459.020 kb on + strand, within Psyr_4600 at 5459.020 kb on + strand, within Psyr_4600 at 5459.020 kb on + strand, within Psyr_4600 at 5459.020 kb on + strand, within Psyr_4600 at 5459.020 kb on + strand, within Psyr_4600 at 5459.045 kb on + strand, within Psyr_4600 at 5459.045 kb on + strand, within Psyr_4600 at 5459.045 kb on + strand at 5459.045 kb on + strand, within Psyr_4600 at 5459.046 kb on - strand, within Psyr_4600 at 5459.046 kb on - strand, within Psyr_4600 at 5459.046 kb on - strand, within Psyr_4600 at 5459.046 kb on - strand, within Psyr_4600 at 5459.046 kb on - strand, within Psyr_4600 at 5459.046 kb on - strand, within Psyr_4600 at 5459.046 kb on - strand, within Psyr_4600 at 5459.046 kb on - strand, within Psyr_4600 at 5459.050 kb on + strand, within Psyr_4600 at 5459.050 kb on + strand, within Psyr_4600 at 5459.050 kb on + strand, within Psyr_4600 at 5459.050 kb on + strand, within Psyr_4600 at 5459.051 kb on - strand, within Psyr_4600 at 5459.051 kb on - strand, within Psyr_4600 at 5459.051 kb on - strand, within Psyr_4600 at 5459.051 kb on - strand, within Psyr_4600 at 5459.320 kb on + strand, within Psyr_4600 at 5459.320 kb on + strand, within Psyr_4600 at 5459.320 kb on + strand, within Psyr_4600 at 5459.320 kb on + strand, within Psyr_4600 at 5459.320 kb on + strand, within Psyr_4600 at 5459.320 kb on + strand, within Psyr_4600 at 5459.320 kb on + strand, within Psyr_4600 at 5459.320 kb on + strand, within Psyr_4600 at 5459.320 kb on + strand, within Psyr_4600 at 5459.320 kb on + strand, within Psyr_4600 at 5459.320 kb on + strand, within Psyr_4600 at 5459.320 kb on + strand, within Psyr_4600 at 5459.321 kb on - strand, within Psyr_4600 at 5459.321 kb on - strand, within Psyr_4600 at 5459.321 kb on - strand, within Psyr_4600 at 5459.612 kb on + strand at 5459.612 kb on + strand at 5459.612 kb on + strand at 5459.613 kb on - strand at 5459.613 kb on - strand at 5459.613 kb on - strand at 5459.616 kb on + strand at 5459.617 kb on - strand at 5459.617 kb on - strand at 5459.617 kb on - strand at 5459.627 kb on + strand at 5459.627 kb on + strand at 5459.628 kb on - strand at 5459.673 kb on + strand at 5459.673 kb on + strand at 5459.674 kb on - strand at 5459.679 kb on + strand at 5459.679 kb on + strand at 5459.679 kb on + strand at 5459.679 kb on + strand at 5459.680 kb on - strand at 5459.680 kb on - strand at 5459.680 kb on - strand at 5459.680 kb on - strand at 5459.713 kb on + strand, within Psyr_4601 at 5459.714 kb on - strand, within Psyr_4601 at 5459.714 kb on - strand, within Psyr_4601 at 5459.805 kb on + strand, within Psyr_4601 at 5459.848 kb on + strand at 5459.865 kb on + strand at 5459.865 kb on + strand at 5459.865 kb on + strand at 5459.865 kb on + strand at 5459.865 kb on + strand at 5459.865 kb on + strand at 5459.865 kb on + strand at 5459.865 kb on + strand at 5459.865 kb on + strand at 5459.865 kb on + strand at 5459.865 kb on + strand at 5459.865 kb on + strand at 5459.866 kb on - strand at 5459.866 kb on - strand at 5459.866 kb on - strand at 5459.866 kb on - strand at 5459.866 kb on - strand at 5459.866 kb on - strand at 5459.866 kb on - strand at 5459.866 kb on - strand at 5459.866 kb on - strand at 5459.866 kb on - strand at 5459.866 kb on - strand at 5459.866 kb on - strand at 5459.866 kb on - strand at 5459.866 kb on - strand at 5459.866 kb on - strand at 5459.866 kb on - strand at 5460.242 kb on + strand, within Psyr_4602 at 5460.311 kb on + strand, within Psyr_4602 at 5460.311 kb on + strand, within Psyr_4602 at 5460.403 kb on + strand, within Psyr_4602 at 5460.403 kb on + strand, within Psyr_4602 at 5460.403 kb on + strand, within Psyr_4602 at 5460.403 kb on + strand, within Psyr_4602 at 5460.403 kb on + strand, within Psyr_4602 at 5460.403 kb on + strand, within Psyr_4602 at 5460.403 kb on + strand, within Psyr_4602 at 5460.403 kb on + strand, within Psyr_4602 at 5460.403 kb on + strand, within Psyr_4602 at 5460.403 kb on + strand, within Psyr_4602 at 5460.403 kb on + strand, within Psyr_4602 at 5460.403 kb on + strand, within Psyr_4602 at 5460.403 kb on + strand, within Psyr_4602 at 5460.403 kb on + strand, within Psyr_4602 at 5460.403 kb on + strand, within Psyr_4602 at 5460.404 kb on - strand, within Psyr_4602 at 5460.404 kb on - strand, within Psyr_4602 at 5460.404 kb on - strand, within Psyr_4602 at 5460.404 kb on - strand, within Psyr_4602 at 5460.404 kb on - strand, within Psyr_4602 at 5460.404 kb on - strand, within Psyr_4602 at 5460.404 kb on - strand, within Psyr_4602 at 5460.404 kb on - strand, within Psyr_4602 at 5460.404 kb on - strand, within Psyr_4602 at 5460.404 kb on - strand, within Psyr_4602 at 5460.404 kb on - strand, within Psyr_4602 at 5460.404 kb on - strand, within Psyr_4602 at 5460.404 kb on - strand, within Psyr_4602 at 5460.404 kb on - strand, within Psyr_4602 at 5460.404 kb on - strand, within Psyr_4602 at 5460.404 kb on - strand, within Psyr_4602 at 5460.404 kb on - strand, within Psyr_4602 at 5460.404 kb on - strand, within Psyr_4602 at 5460.404 kb on - strand, within Psyr_4602 at 5460.404 kb on - strand, within Psyr_4602 at 5460.404 kb on - strand, within Psyr_4602 at 5460.404 kb on - strand, within Psyr_4602 at 5460.404 kb on - strand, within Psyr_4602 at 5460.405 kb on + strand, within Psyr_4602 at 5460.405 kb on + strand, within Psyr_4602 at 5460.405 kb on + strand, within Psyr_4602 at 5460.405 kb on + strand, within Psyr_4602 at 5460.405 kb on + strand, within Psyr_4602 at 5460.405 kb on + strand, within Psyr_4602 at 5460.405 kb on + strand, within Psyr_4602 at 5460.405 kb on + strand, within Psyr_4602 at 5460.405 kb on + strand, within Psyr_4602 at 5460.405 kb on + strand, within Psyr_4602 at 5460.405 kb on + strand, within Psyr_4602 at 5460.405 kb on + strand, within Psyr_4602 at 5460.405 kb on + strand, within Psyr_4602 at 5460.405 kb on + strand, within Psyr_4602 at 5460.405 kb on + strand, within Psyr_4602 at 5460.405 kb on + strand, within Psyr_4602 at 5460.406 kb on - strand, within Psyr_4602 at 5460.406 kb on - strand, within Psyr_4602 at 5460.406 kb on - strand, within Psyr_4602 at 5460.406 kb on - strand, within Psyr_4602 at 5460.406 kb on - strand, within Psyr_4602 at 5460.406 kb on - strand, within Psyr_4602 at 5460.406 kb on - strand, within Psyr_4602 at 5460.406 kb on - strand, within Psyr_4602 at 5460.406 kb on - strand, within Psyr_4602 at 5460.406 kb on - strand, within Psyr_4602 at 5460.406 kb on - strand, within Psyr_4602 at 5460.406 kb on - strand, within Psyr_4602 at 5460.406 kb on - strand, within Psyr_4602 at 5460.406 kb on - strand, within Psyr_4602 at 5460.407 kb on + strand, within Psyr_4602 at 5460.407 kb on + strand, within Psyr_4602 at 5460.407 kb on + strand, within Psyr_4602 at 5460.407 kb on + strand, within Psyr_4602 at 5460.407 kb on + strand, within Psyr_4602 at 5460.407 kb on + strand, within Psyr_4602 at 5460.407 kb on + strand, within Psyr_4602 at 5460.407 kb on + strand, within Psyr_4602 at 5460.407 kb on + strand, within Psyr_4602 at 5460.407 kb on + strand, within Psyr_4602 at 5460.407 kb on + strand, within Psyr_4602 at 5460.408 kb on - strand, within Psyr_4602 at 5460.408 kb on - strand, within Psyr_4602 at 5460.408 kb on - strand, within Psyr_4602 at 5460.408 kb on - strand, within Psyr_4602 at 5460.408 kb on - strand, within Psyr_4602 at 5460.408 kb on - strand, within Psyr_4602 at 5460.408 kb on - strand, within Psyr_4602 at 5460.467 kb on + strand, within Psyr_4602 at 5460.467 kb on + strand, within Psyr_4602 at 5460.565 kb on + strand at 5460.565 kb on + strand at 5460.565 kb on + strand at 5460.565 kb on + strand at 5460.565 kb on + strand at 5460.566 kb on - strand at 5460.566 kb on - strand at 5460.566 kb on - strand at 5460.566 kb on - strand at 5460.594 kb on - strand at 5460.594 kb on - strand at 5460.594 kb on - strand at 5460.647 kb on + strand at 5460.694 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Berberine 250 ug/ml remove 5,458,747 + Psyr_4600 0.22 -0.3 5,458,747 + Psyr_4600 0.22 -0.7 5,458,747 + Psyr_4600 0.22 -0.9 5,458,747 + Psyr_4600 0.22 +0.5 5,458,747 + Psyr_4600 0.22 -0.1 5,458,748 - Psyr_4600 0.22 +1.9 5,458,748 - Psyr_4600 0.22 -0.1 5,458,809 - Psyr_4600 0.27 -0.4 5,458,840 + Psyr_4600 0.29 -0.9 5,459,003 + Psyr_4600 0.43 -0.1 5,459,004 - Psyr_4600 0.43 -1.1 5,459,004 - Psyr_4600 0.43 -0.6 5,459,004 - Psyr_4600 0.43 +0.9 5,459,004 - Psyr_4600 0.43 -0.2 5,459,004 - Psyr_4600 0.43 -1.4 5,459,020 + Psyr_4600 0.45 -0.8 5,459,020 + Psyr_4600 0.45 +0.9 5,459,020 + Psyr_4600 0.45 -0.8 5,459,020 + Psyr_4600 0.45 -0.8 5,459,020 + Psyr_4600 0.45 +1.5 5,459,020 + Psyr_4600 0.45 +0.0 5,459,045 + Psyr_4600 0.47 -0.5 5,459,045 + Psyr_4600 0.47 +0.1 5,459,045 + -0.1 5,459,045 + Psyr_4600 0.47 -0.1 5,459,046 - Psyr_4600 0.47 -1.2 5,459,046 - Psyr_4600 0.47 -0.7 5,459,046 - Psyr_4600 0.47 -0.2 5,459,046 - Psyr_4600 0.47 +0.5 5,459,046 - Psyr_4600 0.47 -0.3 5,459,046 - Psyr_4600 0.47 +0.2 5,459,046 - Psyr_4600 0.47 -1.1 5,459,046 - Psyr_4600 0.47 +1.2 5,459,050 + Psyr_4600 0.47 +0.9 5,459,050 + Psyr_4600 0.47 +0.9 5,459,050 + Psyr_4600 0.47 -0.1 5,459,050 + Psyr_4600 0.47 +2.5 5,459,051 - Psyr_4600 0.47 -1.1 5,459,051 - Psyr_4600 0.47 +0.3 5,459,051 - Psyr_4600 0.47 -0.7 5,459,051 - Psyr_4600 0.47 -2.3 5,459,320 + Psyr_4600 0.70 -1.5 5,459,320 + Psyr_4600 0.70 -0.9 5,459,320 + Psyr_4600 0.70 +0.4 5,459,320 + Psyr_4600 0.70 -0.3 5,459,320 + Psyr_4600 0.70 +0.2 5,459,320 + Psyr_4600 0.70 +0.4 5,459,320 + Psyr_4600 0.70 -0.1 5,459,320 + Psyr_4600 0.70 -0.1 5,459,320 + Psyr_4600 0.70 -0.1 5,459,320 + Psyr_4600 0.70 -2.8 5,459,320 + Psyr_4600 0.70 -0.2 5,459,320 + Psyr_4600 0.70 +0.6 5,459,321 - Psyr_4600 0.71 -0.3 5,459,321 - Psyr_4600 0.71 -0.3 5,459,321 - Psyr_4600 0.71 +0.9 5,459,612 + +0.4 5,459,612 + -0.5 5,459,612 + -0.3 5,459,613 - -0.1 5,459,613 - -0.0 5,459,613 - -0.5 5,459,616 + -0.7 5,459,617 - +0.9 5,459,617 - -0.7 5,459,617 - -1.4 5,459,627 + -2.8 5,459,627 + -0.7 5,459,628 - -0.2 5,459,673 + +0.1 5,459,673 + +0.3 5,459,674 - -1.3 5,459,679 + -1.2 5,459,679 + -1.6 5,459,679 + +0.3 5,459,679 + +0.0 5,459,680 - -0.5 5,459,680 - -0.3 5,459,680 - -1.4 5,459,680 - -0.1 5,459,713 + Psyr_4601 0.19 -0.2 5,459,714 - Psyr_4601 0.19 -0.7 5,459,714 - Psyr_4601 0.19 -1.2 5,459,805 + Psyr_4601 0.68 -0.1 5,459,848 + -1.1 5,459,865 + -0.8 5,459,865 + -0.9 5,459,865 + -0.5 5,459,865 + -0.2 5,459,865 + +0.2 5,459,865 + +0.6 5,459,865 + -0.6 5,459,865 + -0.1 5,459,865 + -0.4 5,459,865 + -1.1 5,459,865 + -2.0 5,459,865 + +0.5 5,459,866 - -0.7 5,459,866 - -0.2 5,459,866 - -1.7 5,459,866 - +0.3 5,459,866 - +0.8 5,459,866 - +0.3 5,459,866 - +1.9 5,459,866 - +0.6 5,459,866 - -0.5 5,459,866 - +0.3 5,459,866 - -0.8 5,459,866 - -1.1 5,459,866 - -0.9 5,459,866 - -1.4 5,459,866 - +1.7 5,459,866 - -0.1 5,460,242 + Psyr_4602 0.24 -0.4 5,460,311 + Psyr_4602 0.39 -0.2 5,460,311 + Psyr_4602 0.39 +0.0 5,460,403 + Psyr_4602 0.60 +0.4 5,460,403 + Psyr_4602 0.60 -0.2 5,460,403 + Psyr_4602 0.60 +0.2 5,460,403 + Psyr_4602 0.60 +0.2 5,460,403 + Psyr_4602 0.60 -2.0 5,460,403 + Psyr_4602 0.60 -0.1 5,460,403 + Psyr_4602 0.60 +0.7 5,460,403 + Psyr_4602 0.60 -0.7 5,460,403 + Psyr_4602 0.60 -0.4 5,460,403 + Psyr_4602 0.60 +0.9 5,460,403 + Psyr_4602 0.60 -0.1 5,460,403 + Psyr_4602 0.60 +1.4 5,460,403 + Psyr_4602 0.60 +0.7 5,460,403 + Psyr_4602 0.60 -0.3 5,460,403 + Psyr_4602 0.60 -0.4 5,460,404 - Psyr_4602 0.60 +0.2 5,460,404 - Psyr_4602 0.60 -0.7 5,460,404 - Psyr_4602 0.60 -1.9 5,460,404 - Psyr_4602 0.60 +0.7 5,460,404 - Psyr_4602 0.60 -0.6 5,460,404 - Psyr_4602 0.60 -0.3 5,460,404 - Psyr_4602 0.60 -0.7 5,460,404 - Psyr_4602 0.60 -0.5 5,460,404 - Psyr_4602 0.60 +0.6 5,460,404 - Psyr_4602 0.60 -1.1 5,460,404 - Psyr_4602 0.60 +0.0 5,460,404 - Psyr_4602 0.60 -0.2 5,460,404 - Psyr_4602 0.60 +0.6 5,460,404 - Psyr_4602 0.60 -1.7 5,460,404 - Psyr_4602 0.60 -0.5 5,460,404 - Psyr_4602 0.60 -0.5 5,460,404 - Psyr_4602 0.60 +1.1 5,460,404 - Psyr_4602 0.60 +0.1 5,460,404 - Psyr_4602 0.60 -0.9 5,460,404 - Psyr_4602 0.60 -0.2 5,460,404 - Psyr_4602 0.60 -1.1 5,460,404 - Psyr_4602 0.60 -0.3 5,460,404 - Psyr_4602 0.60 +0.2 5,460,405 + Psyr_4602 0.61 +0.9 5,460,405 + Psyr_4602 0.61 +0.1 5,460,405 + Psyr_4602 0.61 -0.1 5,460,405 + Psyr_4602 0.61 -0.4 5,460,405 + Psyr_4602 0.61 +0.1 5,460,405 + Psyr_4602 0.61 -0.5 5,460,405 + Psyr_4602 0.61 +0.6 5,460,405 + Psyr_4602 0.61 -0.3 5,460,405 + Psyr_4602 0.61 +0.7 5,460,405 + Psyr_4602 0.61 -0.7 5,460,405 + Psyr_4602 0.61 +0.4 5,460,405 + Psyr_4602 0.61 +0.4 5,460,405 + Psyr_4602 0.61 +0.5 5,460,405 + Psyr_4602 0.61 -1.1 5,460,405 + Psyr_4602 0.61 -0.1 5,460,405 + Psyr_4602 0.61 -0.4 5,460,406 - Psyr_4602 0.61 +0.5 5,460,406 - Psyr_4602 0.61 -1.2 5,460,406 - Psyr_4602 0.61 +0.1 5,460,406 - Psyr_4602 0.61 -0.7 5,460,406 - Psyr_4602 0.61 +0.0 5,460,406 - Psyr_4602 0.61 +0.1 5,460,406 - Psyr_4602 0.61 -0.7 5,460,406 - Psyr_4602 0.61 -0.3 5,460,406 - Psyr_4602 0.61 -0.1 5,460,406 - Psyr_4602 0.61 +0.3 5,460,406 - Psyr_4602 0.61 -1.1 5,460,406 - Psyr_4602 0.61 -0.2 5,460,406 - Psyr_4602 0.61 -0.4 5,460,406 - Psyr_4602 0.61 -0.5 5,460,407 + Psyr_4602 0.61 +1.5 5,460,407 + Psyr_4602 0.61 -0.2 5,460,407 + Psyr_4602 0.61 -1.8 5,460,407 + Psyr_4602 0.61 +1.2 5,460,407 + Psyr_4602 0.61 +0.1 5,460,407 + Psyr_4602 0.61 +0.9 5,460,407 + Psyr_4602 0.61 +0.9 5,460,407 + Psyr_4602 0.61 -0.6 5,460,407 + Psyr_4602 0.61 -1.9 5,460,407 + Psyr_4602 0.61 -0.3 5,460,407 + Psyr_4602 0.61 +0.2 5,460,408 - Psyr_4602 0.61 -0.3 5,460,408 - Psyr_4602 0.61 -0.7 5,460,408 - Psyr_4602 0.61 -3.0 5,460,408 - Psyr_4602 0.61 -0.6 5,460,408 - Psyr_4602 0.61 -0.2 5,460,408 - Psyr_4602 0.61 -0.3 5,460,408 - Psyr_4602 0.61 +0.3 5,460,467 + Psyr_4602 0.75 -1.1 5,460,467 + Psyr_4602 0.75 +0.2 5,460,565 + +0.9 5,460,565 + -0.9 5,460,565 + +1.9 5,460,565 + -1.2 5,460,565 + +1.5 5,460,566 - -0.1 5,460,566 - +0.9 5,460,566 - -0.8 5,460,566 - +0.8 5,460,594 - -0.7 5,460,594 - -0.5 5,460,594 - -1.1 5,460,647 + -0.3 5,460,694 + +0.7
Or see this region's nucleotide sequence