Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4586

Experiment: KB with Berberine 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4585 and Psyr_4586 are separated by 148 nucleotidesPsyr_4586 and Psyr_4587 overlap by 13 nucleotides Psyr_4585: Psyr_4585 - hypothetical protein, at 5,445,804 to 5,447,126 _4585 Psyr_4586: Psyr_4586 - tail protein, putative, at 5,447,275 to 5,447,874 _4586 Psyr_4587: Psyr_4587 - Baseplate J-like protein, at 5,447,862 to 5,448,902 _4587 Position (kb) 5447 5448Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5446.352 kb on + strand, within Psyr_4585at 5446.352 kb on + strand, within Psyr_4585at 5446.352 kb on + strand, within Psyr_4585at 5446.352 kb on + strand, within Psyr_4585at 5446.352 kb on + strand, within Psyr_4585at 5446.352 kb on + strand, within Psyr_4585at 5446.352 kb on + strand, within Psyr_4585at 5446.352 kb on + strand, within Psyr_4585at 5446.352 kb on + strand, within Psyr_4585at 5446.352 kb on + strand, within Psyr_4585at 5446.352 kb on + strand, within Psyr_4585at 5446.352 kb on + strand, within Psyr_4585at 5446.352 kb on + strand, within Psyr_4585at 5446.352 kb on + strand, within Psyr_4585at 5446.353 kb on - strand, within Psyr_4585at 5446.353 kb on - strand, within Psyr_4585at 5446.353 kb on - strand, within Psyr_4585at 5446.353 kb on - strand, within Psyr_4585at 5446.353 kb on - strand, within Psyr_4585at 5446.353 kb on - strand, within Psyr_4585at 5446.353 kb on - strand, within Psyr_4585at 5446.353 kb on - strand, within Psyr_4585at 5446.353 kb on - strand, within Psyr_4585at 5446.353 kb on - strand, within Psyr_4585at 5446.353 kb on - strand, within Psyr_4585at 5446.353 kb on - strand, within Psyr_4585at 5446.353 kb on - strand, within Psyr_4585at 5446.353 kb on - strand, within Psyr_4585at 5446.353 kb on - strand, within Psyr_4585at 5446.353 kb on - strand, within Psyr_4585at 5446.353 kb on - strand, within Psyr_4585at 5446.353 kb on - strand, within Psyr_4585at 5446.401 kb on + strand, within Psyr_4585at 5446.401 kb on + strand, within Psyr_4585at 5446.460 kb on + strand, within Psyr_4585at 5446.491 kb on + strand, within Psyr_4585at 5446.491 kb on + strand, within Psyr_4585at 5446.491 kb on + strand, within Psyr_4585at 5446.491 kb on + strand, within Psyr_4585at 5446.492 kb on - strand, within Psyr_4585at 5446.590 kb on + strand, within Psyr_4585at 5446.637 kb on + strand, within Psyr_4585at 5446.637 kb on + strand, within Psyr_4585at 5446.725 kb on + strand, within Psyr_4585at 5446.725 kb on + strand, within Psyr_4585at 5446.725 kb on + strand, within Psyr_4585at 5446.726 kb on - strand, within Psyr_4585at 5446.726 kb on - strand, within Psyr_4585at 5446.756 kb on + strand, within Psyr_4585at 5446.756 kb on + strand, within Psyr_4585at 5446.756 kb on + strand, within Psyr_4585at 5446.756 kb on + strand, within Psyr_4585at 5446.756 kb on + strand, within Psyr_4585at 5446.756 kb on + strand, within Psyr_4585at 5446.756 kb on + strand, within Psyr_4585at 5446.757 kb on - strand, within Psyr_4585at 5446.757 kb on - strand, within Psyr_4585at 5446.757 kb on - strand, within Psyr_4585at 5446.757 kb on - strand, within Psyr_4585at 5446.757 kb on - strand, within Psyr_4585at 5446.814 kb on + strand, within Psyr_4585at 5446.814 kb on + strand, within Psyr_4585at 5446.814 kb on + strand, within Psyr_4585at 5446.814 kb on + strand, within Psyr_4585at 5446.814 kb on + strand, within Psyr_4585at 5446.814 kb on + strand, within Psyr_4585at 5446.814 kb on + strand, within Psyr_4585at 5446.815 kb on - strand, within Psyr_4585at 5446.815 kb on - strand, within Psyr_4585at 5446.834 kb on - strand, within Psyr_4585at 5446.834 kb on - strand, within Psyr_4585at 5446.865 kb on + strand, within Psyr_4585at 5446.865 kb on + strand, within Psyr_4585at 5446.865 kb on + strand, within Psyr_4585at 5446.865 kb on + strand, within Psyr_4585at 5446.865 kb on + strand, within Psyr_4585at 5446.866 kb on - strand, within Psyr_4585at 5446.866 kb on - strand, within Psyr_4585at 5446.866 kb on - strand, within Psyr_4585at 5446.866 kb on - strand, within Psyr_4585at 5446.889 kb on + strand, within Psyr_4585at 5446.907 kb on + strand, within Psyr_4585at 5446.907 kb on + strand, within Psyr_4585at 5446.907 kb on + strand, within Psyr_4585at 5446.907 kb on + strand, within Psyr_4585at 5446.908 kb on - strand, within Psyr_4585at 5446.908 kb on - strand, within Psyr_4585at 5446.908 kb on - strand, within Psyr_4585at 5446.908 kb on - strand, within Psyr_4585at 5446.908 kb on - strand, within Psyr_4585at 5446.908 kb on - strand, within Psyr_4585at 5446.908 kb on - strand, within Psyr_4585at 5446.908 kb on - strand, within Psyr_4585at 5446.911 kb on + strand, within Psyr_4585at 5446.911 kb on + strand, within Psyr_4585at 5446.917 kb on + strand, within Psyr_4585at 5446.917 kb on + strand, within Psyr_4585at 5446.918 kb on - strand, within Psyr_4585at 5447.035 kb on + strandat 5447.036 kb on - strandat 5447.058 kb on + strandat 5447.058 kb on + strandat 5447.058 kb on + strandat 5447.058 kb on + strandat 5447.058 kb on + strandat 5447.059 kb on - strandat 5447.059 kb on - strandat 5447.059 kb on - strandat 5447.059 kb on - strandat 5447.059 kb on - strandat 5447.157 kb on - strandat 5447.175 kb on - strandat 5447.175 kb on - strandat 5447.211 kb on + strandat 5447.211 kb on + strandat 5447.211 kb on + strandat 5447.211 kb on + strandat 5447.212 kb on - strandat 5447.236 kb on - strandat 5447.552 kb on + strand, within Psyr_4586at 5447.552 kb on + strand, within Psyr_4586at 5447.552 kb on + strand, within Psyr_4586at 5447.552 kb on + strand, within Psyr_4586at 5447.552 kb on + strand, within Psyr_4586at 5447.553 kb on - strand, within Psyr_4586at 5447.846 kb on + strandat 5447.847 kb on - strandat 5447.863 kb on + strandat 5447.864 kb on - strandat 5447.864 kb on - strandat 5448.098 kb on - strand, within Psyr_4587at 5448.130 kb on + strand, within Psyr_4587at 5448.130 kb on + strand, within Psyr_4587at 5448.130 kb on + strand, within Psyr_4587at 5448.130 kb on + strand, within Psyr_4587at 5448.130 kb on + strand, within Psyr_4587at 5448.130 kb on + strand, within Psyr_4587at 5448.130 kb on + strand, within Psyr_4587at 5448.130 kb on + strand, within Psyr_4587at 5448.130 kb on + strand, within Psyr_4587at 5448.130 kb on + strand, within Psyr_4587at 5448.130 kb on + strand, within Psyr_4587at 5448.130 kb on + strand, within Psyr_4587at 5448.130 kb on + strand, within Psyr_4587at 5448.130 kb on + strand, within Psyr_4587at 5448.130 kb on + strand, within Psyr_4587at 5448.130 kb on + strand, within Psyr_4587at 5448.130 kb on + strand, within Psyr_4587at 5448.130 kb on + strand, within Psyr_4587at 5448.130 kb on + strand, within Psyr_4587at 5448.130 kb on + strand, within Psyr_4587at 5448.130 kb on + strand, within Psyr_4587at 5448.130 kb on + strand, within Psyr_4587at 5448.130 kb on + strand, within Psyr_4587at 5448.130 kb on + strand, within Psyr_4587at 5448.130 kb on + strand, within Psyr_4587at 5448.131 kb on - strand, within Psyr_4587at 5448.131 kb on - strand, within Psyr_4587at 5448.131 kb on - strand, within Psyr_4587at 5448.131 kb on - strand, within Psyr_4587at 5448.131 kb on - strand, within Psyr_4587at 5448.131 kb on - strand, within Psyr_4587at 5448.131 kb on - strand, within Psyr_4587at 5448.131 kb on - strand, within Psyr_4587at 5448.131 kb on - strand, within Psyr_4587at 5448.131 kb on - strand, within Psyr_4587at 5448.131 kb on - strand, within Psyr_4587at 5448.131 kb on - strand, within Psyr_4587at 5448.131 kb on - strand, within Psyr_4587at 5448.131 kb on - strand, within Psyr_4587at 5448.131 kb on - strand, within Psyr_4587at 5448.131 kb on - strand, within Psyr_4587at 5448.131 kb on - strand, within Psyr_4587at 5448.131 kb on - strand, within Psyr_4587at 5448.166 kb on + strand, within Psyr_4587at 5448.166 kb on + strand, within Psyr_4587at 5448.167 kb on - strand, within Psyr_4587at 5448.167 kb on - strand, within Psyr_4587at 5448.167 kb on - strand, within Psyr_4587at 5448.167 kb on - strand, within Psyr_4587at 5448.295 kb on - strand, within Psyr_4587at 5448.316 kb on + strand, within Psyr_4587at 5448.316 kb on + strand, within Psyr_4587at 5448.316 kb on + strand, within Psyr_4587at 5448.316 kb on + strand, within Psyr_4587at 5448.316 kb on + strand, within Psyr_4587at 5448.316 kb on + strand, within Psyr_4587at 5448.316 kb on + strand, within Psyr_4587at 5448.316 kb on + strand, within Psyr_4587at 5448.317 kb on - strand, within Psyr_4587at 5448.317 kb on - strand, within Psyr_4587at 5448.317 kb on - strand, within Psyr_4587at 5448.317 kb on - strand, within Psyr_4587at 5448.574 kb on + strand, within Psyr_4587at 5448.772 kb on + strand, within Psyr_4587

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Berberine 250 ug/ml
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5,446,352 + Psyr_4585 0.41 -0.6
5,446,352 + Psyr_4585 0.41 -0.4
5,446,352 + Psyr_4585 0.41 +0.1
5,446,352 + Psyr_4585 0.41 +0.2
5,446,352 + Psyr_4585 0.41 +0.3
5,446,352 + Psyr_4585 0.41 +0.2
5,446,352 + Psyr_4585 0.41 +0.4
5,446,352 + Psyr_4585 0.41 -0.1
5,446,352 + Psyr_4585 0.41 -0.7
5,446,352 + Psyr_4585 0.41 +1.1
5,446,352 + Psyr_4585 0.41 +1.5
5,446,352 + Psyr_4585 0.41 -1.4
5,446,352 + Psyr_4585 0.41 +1.3
5,446,352 + Psyr_4585 0.41 -0.1
5,446,353 - Psyr_4585 0.41 -0.9
5,446,353 - Psyr_4585 0.41 -0.7
5,446,353 - Psyr_4585 0.41 -0.4
5,446,353 - Psyr_4585 0.41 -0.3
5,446,353 - Psyr_4585 0.41 +0.4
5,446,353 - Psyr_4585 0.41 -0.2
5,446,353 - Psyr_4585 0.41 -0.2
5,446,353 - Psyr_4585 0.41 -0.9
5,446,353 - Psyr_4585 0.41 -0.2
5,446,353 - Psyr_4585 0.41 +0.7
5,446,353 - Psyr_4585 0.41 +0.6
5,446,353 - Psyr_4585 0.41 -1.3
5,446,353 - Psyr_4585 0.41 +1.5
5,446,353 - Psyr_4585 0.41 -1.0
5,446,353 - Psyr_4585 0.41 +2.2
5,446,353 - Psyr_4585 0.41 +0.9
5,446,353 - Psyr_4585 0.41 -0.3
5,446,353 - Psyr_4585 0.41 +0.3
5,446,401 + Psyr_4585 0.45 -0.4
5,446,401 + Psyr_4585 0.45 +0.3
5,446,460 + Psyr_4585 0.50 -0.3
5,446,491 + Psyr_4585 0.52 +0.6
5,446,491 + Psyr_4585 0.52 -0.1
5,446,491 + Psyr_4585 0.52 -0.4
5,446,491 + Psyr_4585 0.52 -1.3
5,446,492 - Psyr_4585 0.52 -0.7
5,446,590 + Psyr_4585 0.59 +0.9
5,446,637 + Psyr_4585 0.63 -0.4
5,446,637 + Psyr_4585 0.63 -1.5
5,446,725 + Psyr_4585 0.70 +1.3
5,446,725 + Psyr_4585 0.70 +0.2
5,446,725 + Psyr_4585 0.70 -0.4
5,446,726 - Psyr_4585 0.70 -1.4
5,446,726 - Psyr_4585 0.70 -0.8
5,446,756 + Psyr_4585 0.72 -2.5
5,446,756 + Psyr_4585 0.72 -2.5
5,446,756 + Psyr_4585 0.72 -2.1
5,446,756 + Psyr_4585 0.72 +0.3
5,446,756 + Psyr_4585 0.72 -0.3
5,446,756 + Psyr_4585 0.72 -1.9
5,446,756 + Psyr_4585 0.72 -0.7
5,446,757 - Psyr_4585 0.72 +0.7
5,446,757 - Psyr_4585 0.72 +0.4
5,446,757 - Psyr_4585 0.72 -0.9
5,446,757 - Psyr_4585 0.72 +1.5
5,446,757 - Psyr_4585 0.72 -0.7
5,446,814 + Psyr_4585 0.76 -1.4
5,446,814 + Psyr_4585 0.76 -1.2
5,446,814 + Psyr_4585 0.76 -0.8
5,446,814 + Psyr_4585 0.76 +0.2
5,446,814 + Psyr_4585 0.76 -1.0
5,446,814 + Psyr_4585 0.76 -0.4
5,446,814 + Psyr_4585 0.76 -0.6
5,446,815 - Psyr_4585 0.76 -0.1
5,446,815 - Psyr_4585 0.76 -0.9
5,446,834 - Psyr_4585 0.78 +0.8
5,446,834 - Psyr_4585 0.78 -0.7
5,446,865 + Psyr_4585 0.80 -0.5
5,446,865 + Psyr_4585 0.80 -0.2
5,446,865 + Psyr_4585 0.80 -0.6
5,446,865 + Psyr_4585 0.80 -1.2
5,446,865 + Psyr_4585 0.80 -1.8
5,446,866 - Psyr_4585 0.80 -1.0
5,446,866 - Psyr_4585 0.80 -2.0
5,446,866 - Psyr_4585 0.80 +1.3
5,446,866 - Psyr_4585 0.80 +0.9
5,446,889 + Psyr_4585 0.82 +1.4
5,446,907 + Psyr_4585 0.83 -1.1
5,446,907 + Psyr_4585 0.83 -0.7
5,446,907 + Psyr_4585 0.83 -0.9
5,446,907 + Psyr_4585 0.83 -2.1
5,446,908 - Psyr_4585 0.83 +0.7
5,446,908 - Psyr_4585 0.83 +0.0
5,446,908 - Psyr_4585 0.83 -0.2
5,446,908 - Psyr_4585 0.83 -0.3
5,446,908 - Psyr_4585 0.83 -2.2
5,446,908 - Psyr_4585 0.83 -1.3
5,446,908 - Psyr_4585 0.83 +0.8
5,446,908 - Psyr_4585 0.83 -3.2
5,446,911 + Psyr_4585 0.84 -0.8
5,446,911 + Psyr_4585 0.84 +1.9
5,446,917 + Psyr_4585 0.84 +1.2
5,446,917 + Psyr_4585 0.84 -0.2
5,446,918 - Psyr_4585 0.84 +0.1
5,447,035 + -0.7
5,447,036 - -0.1
5,447,058 + -0.4
5,447,058 + +0.3
5,447,058 + -2.2
5,447,058 + -0.5
5,447,058 + -0.1
5,447,059 - -1.7
5,447,059 - +0.9
5,447,059 - +0.1
5,447,059 - -0.9
5,447,059 - +0.1
5,447,157 - -1.1
5,447,175 - -0.3
5,447,175 - -1.4
5,447,211 + -0.5
5,447,211 + -0.3
5,447,211 + -0.1
5,447,211 + +0.5
5,447,212 - +0.1
5,447,236 - +0.1
5,447,552 + Psyr_4586 0.46 -0.4
5,447,552 + Psyr_4586 0.46 -1.1
5,447,552 + Psyr_4586 0.46 -2.1
5,447,552 + Psyr_4586 0.46 -0.1
5,447,552 + Psyr_4586 0.46 -0.2
5,447,553 - Psyr_4586 0.46 -1.3
5,447,846 + -1.8
5,447,847 - -1.8
5,447,863 + -0.1
5,447,864 - -0.1
5,447,864 - -1.8
5,448,098 - Psyr_4587 0.23 -0.1
5,448,130 + Psyr_4587 0.26 -1.1
5,448,130 + Psyr_4587 0.26 -0.2
5,448,130 + Psyr_4587 0.26 +0.3
5,448,130 + Psyr_4587 0.26 -0.5
5,448,130 + Psyr_4587 0.26 -1.1
5,448,130 + Psyr_4587 0.26 -0.8
5,448,130 + Psyr_4587 0.26 -0.1
5,448,130 + Psyr_4587 0.26 -0.7
5,448,130 + Psyr_4587 0.26 -0.2
5,448,130 + Psyr_4587 0.26 -0.8
5,448,130 + Psyr_4587 0.26 -0.7
5,448,130 + Psyr_4587 0.26 -0.6
5,448,130 + Psyr_4587 0.26 -0.8
5,448,130 + Psyr_4587 0.26 -0.1
5,448,130 + Psyr_4587 0.26 -0.2
5,448,130 + Psyr_4587 0.26 +0.6
5,448,130 + Psyr_4587 0.26 -0.7
5,448,130 + Psyr_4587 0.26 -0.7
5,448,130 + Psyr_4587 0.26 -2.5
5,448,130 + Psyr_4587 0.26 +0.3
5,448,130 + Psyr_4587 0.26 -0.3
5,448,130 + Psyr_4587 0.26 -0.7
5,448,130 + Psyr_4587 0.26 -0.5
5,448,130 + Psyr_4587 0.26 -1.8
5,448,130 + Psyr_4587 0.26 -1.3
5,448,131 - Psyr_4587 0.26 -1.0
5,448,131 - Psyr_4587 0.26 -0.7
5,448,131 - Psyr_4587 0.26 +0.0
5,448,131 - Psyr_4587 0.26 -1.1
5,448,131 - Psyr_4587 0.26 -0.9
5,448,131 - Psyr_4587 0.26 -0.5
5,448,131 - Psyr_4587 0.26 +0.3
5,448,131 - Psyr_4587 0.26 -0.1
5,448,131 - Psyr_4587 0.26 -0.2
5,448,131 - Psyr_4587 0.26 -0.2
5,448,131 - Psyr_4587 0.26 -0.8
5,448,131 - Psyr_4587 0.26 -1.9
5,448,131 - Psyr_4587 0.26 -0.3
5,448,131 - Psyr_4587 0.26 +0.1
5,448,131 - Psyr_4587 0.26 +0.9
5,448,131 - Psyr_4587 0.26 -1.7
5,448,131 - Psyr_4587 0.26 -1.9
5,448,131 - Psyr_4587 0.26 -0.9
5,448,166 + Psyr_4587 0.29 +0.3
5,448,166 + Psyr_4587 0.29 -0.5
5,448,167 - Psyr_4587 0.29 -0.3
5,448,167 - Psyr_4587 0.29 +0.6
5,448,167 - Psyr_4587 0.29 -0.7
5,448,167 - Psyr_4587 0.29 -0.7
5,448,295 - Psyr_4587 0.42 +0.2
5,448,316 + Psyr_4587 0.44 +0.7
5,448,316 + Psyr_4587 0.44 -0.7
5,448,316 + Psyr_4587 0.44 +0.9
5,448,316 + Psyr_4587 0.44 -0.8
5,448,316 + Psyr_4587 0.44 +0.7
5,448,316 + Psyr_4587 0.44 +0.1
5,448,316 + Psyr_4587 0.44 -1.5
5,448,316 + Psyr_4587 0.44 +1.5
5,448,317 - Psyr_4587 0.44 -1.5
5,448,317 - Psyr_4587 0.44 -0.7
5,448,317 - Psyr_4587 0.44 +0.1
5,448,317 - Psyr_4587 0.44 -1.4
5,448,574 + Psyr_4587 0.68 +1.1
5,448,772 + Psyr_4587 0.87 -1.9

Or see this region's nucleotide sequence