Experiment: KB with Berberine 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4575 and Psyr_4576 are separated by 242 nucleotides Psyr_4576 and Psyr_4577 are separated by 201 nucleotides Psyr_4577 and Psyr_4578 are separated by 11 nucleotides Psyr_4578 and Psyr_4579 are separated by 34 nucleotides
Psyr_4575: Psyr_4575 - adenosylmethionine decarboxylase proenzyme, at 5,438,098 to 5,438,892
_4575
Psyr_4576: Psyr_4576 - OsmC-like protein, at 5,439,135 to 5,439,557
_4576
Psyr_4577: Psyr_4577 - Cyclic nucleotide-binding:Bacterial regulatory protein, Crp, at 5,439,759 to 5,440,403
_4577
Psyr_4578: Psyr_4578 - conserved hypothetical protein, at 5,440,415 to 5,441,110
_4578
Psyr_4579: Psyr_4579 - indole-3-glycerol phosphate synthase, at 5,441,145 to 5,441,981
_4579
Position (kb) 5439
5440
5441 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5438.762 kb on + strand, within Psyr_4575 at 5438.762 kb on + strand, within Psyr_4575 at 5438.762 kb on + strand, within Psyr_4575 at 5438.762 kb on + strand, within Psyr_4575 at 5438.763 kb on - strand, within Psyr_4575 at 5438.763 kb on - strand, within Psyr_4575 at 5438.763 kb on - strand, within Psyr_4575 at 5438.777 kb on + strand, within Psyr_4575 at 5438.778 kb on - strand, within Psyr_4575 at 5438.778 kb on - strand, within Psyr_4575 at 5438.778 kb on - strand, within Psyr_4575 at 5438.778 kb on - strand, within Psyr_4575 at 5438.786 kb on + strand, within Psyr_4575 at 5438.786 kb on + strand, within Psyr_4575 at 5438.786 kb on + strand, within Psyr_4575 at 5438.786 kb on + strand, within Psyr_4575 at 5438.786 kb on + strand, within Psyr_4575 at 5438.787 kb on - strand, within Psyr_4575 at 5438.787 kb on - strand, within Psyr_4575 at 5438.817 kb on - strand at 5438.817 kb on - strand at 5438.828 kb on + strand at 5438.828 kb on + strand at 5438.829 kb on - strand at 5438.829 kb on - strand at 5438.829 kb on - strand at 5438.907 kb on + strand at 5438.907 kb on + strand at 5438.907 kb on + strand at 5438.907 kb on + strand at 5438.907 kb on + strand at 5438.907 kb on + strand at 5438.907 kb on + strand at 5438.907 kb on + strand at 5438.907 kb on + strand at 5438.907 kb on + strand at 5438.907 kb on + strand at 5438.908 kb on - strand at 5438.908 kb on - strand at 5438.908 kb on - strand at 5438.908 kb on - strand at 5438.908 kb on - strand at 5438.908 kb on - strand at 5438.908 kb on - strand at 5438.908 kb on - strand at 5438.908 kb on - strand at 5438.908 kb on - strand at 5438.908 kb on - strand at 5438.910 kb on - strand at 5438.971 kb on + strand at 5438.972 kb on - strand at 5438.972 kb on - strand at 5439.039 kb on + strand at 5439.039 kb on + strand at 5439.039 kb on + strand at 5439.039 kb on + strand at 5439.039 kb on + strand at 5439.040 kb on - strand at 5439.040 kb on - strand at 5439.040 kb on - strand at 5439.069 kb on + strand at 5439.070 kb on - strand at 5439.113 kb on - strand at 5439.113 kb on - strand at 5439.211 kb on + strand, within Psyr_4576 at 5439.211 kb on + strand, within Psyr_4576 at 5439.211 kb on + strand, within Psyr_4576 at 5439.211 kb on + strand, within Psyr_4576 at 5439.211 kb on + strand, within Psyr_4576 at 5439.211 kb on + strand, within Psyr_4576 at 5439.211 kb on + strand, within Psyr_4576 at 5439.212 kb on - strand, within Psyr_4576 at 5439.212 kb on - strand, within Psyr_4576 at 5439.212 kb on - strand, within Psyr_4576 at 5439.212 kb on - strand, within Psyr_4576 at 5439.230 kb on - strand, within Psyr_4576 at 5439.445 kb on - strand, within Psyr_4576 at 5439.445 kb on - strand, within Psyr_4576 at 5439.575 kb on - strand at 5439.575 kb on - strand at 5439.575 kb on - strand at 5439.594 kb on + strand at 5439.661 kb on + strand at 5439.661 kb on + strand at 5439.661 kb on + strand at 5439.661 kb on + strand at 5439.662 kb on - strand at 5439.662 kb on - strand at 5439.662 kb on - strand at 5439.662 kb on - strand at 5439.662 kb on - strand at 5439.662 kb on - strand at 5439.662 kb on - strand at 5439.662 kb on - strand at 5439.669 kb on + strand at 5439.669 kb on + strand at 5439.670 kb on - strand at 5439.670 kb on - strand at 5439.670 kb on - strand at 5439.670 kb on - strand at 5439.711 kb on - strand at 5439.714 kb on + strand at 5439.714 kb on + strand at 5439.714 kb on + strand at 5439.715 kb on - strand at 5439.715 kb on - strand at 5439.715 kb on - strand at 5439.715 kb on - strand at 5439.715 kb on - strand at 5439.715 kb on - strand at 5439.715 kb on - strand at 5439.715 kb on - strand at 5439.715 kb on - strand at 5439.715 kb on - strand at 5439.716 kb on + strand at 5439.716 kb on + strand at 5439.716 kb on + strand at 5439.716 kb on + strand at 5439.716 kb on + strand at 5439.716 kb on + strand at 5439.716 kb on + strand at 5439.717 kb on - strand at 5439.717 kb on - strand at 5439.717 kb on - strand at 5439.717 kb on - strand at 5439.717 kb on - strand at 5439.717 kb on - strand at 5439.717 kb on - strand at 5439.717 kb on - strand at 5439.717 kb on - strand at 5439.717 kb on - strand at 5439.717 kb on - strand at 5439.720 kb on + strand at 5439.720 kb on + strand at 5439.721 kb on - strand at 5439.736 kb on - strand at 5439.742 kb on + strand at 5439.742 kb on + strand at 5439.742 kb on + strand at 5439.743 kb on - strand at 5439.743 kb on - strand at 5439.769 kb on + strand at 5439.769 kb on + strand at 5439.952 kb on - strand, within Psyr_4577 at 5440.068 kb on + strand, within Psyr_4577 at 5440.069 kb on - strand, within Psyr_4577 at 5440.069 kb on - strand, within Psyr_4577 at 5440.069 kb on - strand, within Psyr_4577 at 5440.114 kb on - strand, within Psyr_4577 at 5440.151 kb on + strand, within Psyr_4577 at 5440.151 kb on + strand, within Psyr_4577 at 5440.151 kb on + strand, within Psyr_4577 at 5440.152 kb on - strand, within Psyr_4577 at 5440.152 kb on - strand, within Psyr_4577 at 5440.413 kb on - strand at 5440.413 kb on - strand at 5440.413 kb on - strand at 5440.488 kb on + strand, within Psyr_4578 at 5440.488 kb on + strand, within Psyr_4578 at 5440.488 kb on + strand, within Psyr_4578 at 5440.778 kb on + strand, within Psyr_4578 at 5440.779 kb on - strand, within Psyr_4578 at 5440.779 kb on - strand, within Psyr_4578 at 5440.779 kb on - strand, within Psyr_4578 at 5440.799 kb on + strand, within Psyr_4578 at 5440.799 kb on + strand, within Psyr_4578 at 5440.799 kb on + strand, within Psyr_4578 at 5440.800 kb on - strand, within Psyr_4578 at 5440.800 kb on - strand, within Psyr_4578 at 5440.801 kb on + strand, within Psyr_4578 at 5440.801 kb on + strand, within Psyr_4578 at 5440.836 kb on + strand, within Psyr_4578 at 5440.837 kb on - strand, within Psyr_4578 at 5440.837 kb on - strand, within Psyr_4578 at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.166 kb on + strand at 5441.167 kb on - strand at 5441.257 kb on + strand, within Psyr_4579 at 5441.360 kb on + strand, within Psyr_4579 at 5441.360 kb on + strand, within Psyr_4579 at 5441.384 kb on + strand, within Psyr_4579 at 5441.384 kb on + strand, within Psyr_4579 at 5441.384 kb on + strand, within Psyr_4579 at 5441.384 kb on + strand, within Psyr_4579 at 5441.385 kb on - strand, within Psyr_4579 at 5441.385 kb on - strand, within Psyr_4579 at 5441.385 kb on - strand, within Psyr_4579
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Berberine 250 ug/ml remove 5,438,762 + Psyr_4575 0.84 -0.3 5,438,762 + Psyr_4575 0.84 +0.0 5,438,762 + Psyr_4575 0.84 -0.6 5,438,762 + Psyr_4575 0.84 -2.1 5,438,763 - Psyr_4575 0.84 -2.5 5,438,763 - Psyr_4575 0.84 -0.1 5,438,763 - Psyr_4575 0.84 -1.7 5,438,777 + Psyr_4575 0.85 +1.5 5,438,778 - Psyr_4575 0.86 -0.7 5,438,778 - Psyr_4575 0.86 +1.4 5,438,778 - Psyr_4575 0.86 -0.9 5,438,778 - Psyr_4575 0.86 -0.2 5,438,786 + Psyr_4575 0.87 -0.7 5,438,786 + Psyr_4575 0.87 -1.2 5,438,786 + Psyr_4575 0.87 -0.4 5,438,786 + Psyr_4575 0.87 +0.2 5,438,786 + Psyr_4575 0.87 +1.5 5,438,787 - Psyr_4575 0.87 -2.2 5,438,787 - Psyr_4575 0.87 -1.2 5,438,817 - -0.3 5,438,817 - +0.5 5,438,828 + +0.5 5,438,828 + -0.0 5,438,829 - -1.7 5,438,829 - -1.1 5,438,829 - -0.9 5,438,907 + +0.5 5,438,907 + -0.8 5,438,907 + -1.5 5,438,907 + -0.0 5,438,907 + +0.5 5,438,907 + -1.0 5,438,907 + +0.9 5,438,907 + +1.1 5,438,907 + -2.1 5,438,907 + -0.6 5,438,907 + -1.2 5,438,908 - +1.3 5,438,908 - -0.1 5,438,908 - -1.0 5,438,908 - -1.0 5,438,908 - -1.2 5,438,908 - -0.1 5,438,908 - +0.9 5,438,908 - -0.3 5,438,908 - +0.6 5,438,908 - +1.1 5,438,908 - +0.1 5,438,910 - -0.2 5,438,971 + +0.3 5,438,972 - +0.3 5,438,972 - -0.6 5,439,039 + -0.1 5,439,039 + -2.2 5,439,039 + +0.2 5,439,039 + -0.2 5,439,039 + -0.6 5,439,040 - +1.3 5,439,040 - -0.3 5,439,040 - -0.2 5,439,069 + -0.8 5,439,070 - +0.3 5,439,113 - +0.1 5,439,113 - -0.3 5,439,211 + Psyr_4576 0.18 -1.9 5,439,211 + Psyr_4576 0.18 -0.3 5,439,211 + Psyr_4576 0.18 +0.8 5,439,211 + Psyr_4576 0.18 -0.7 5,439,211 + Psyr_4576 0.18 -0.1 5,439,211 + Psyr_4576 0.18 -0.9 5,439,211 + Psyr_4576 0.18 -0.1 5,439,212 - Psyr_4576 0.18 +0.2 5,439,212 - Psyr_4576 0.18 +1.7 5,439,212 - Psyr_4576 0.18 +1.2 5,439,212 - Psyr_4576 0.18 +0.3 5,439,230 - Psyr_4576 0.22 +0.5 5,439,445 - Psyr_4576 0.73 -0.2 5,439,445 - Psyr_4576 0.73 -0.4 5,439,575 - +0.9 5,439,575 - +0.1 5,439,575 - -1.5 5,439,594 + -0.8 5,439,661 + -1.0 5,439,661 + +0.1 5,439,661 + -0.1 5,439,661 + -0.0 5,439,662 - -2.5 5,439,662 - -0.1 5,439,662 - +1.2 5,439,662 - +0.1 5,439,662 - -2.9 5,439,662 - -0.9 5,439,662 - +0.2 5,439,662 - +0.0 5,439,669 + -0.7 5,439,669 + -1.1 5,439,670 - -0.1 5,439,670 - -0.4 5,439,670 - -0.4 5,439,670 - +0.7 5,439,711 - -0.9 5,439,714 + +0.1 5,439,714 + +0.6 5,439,714 + -0.4 5,439,715 - -0.5 5,439,715 - -0.3 5,439,715 - -1.9 5,439,715 - +0.3 5,439,715 - +0.6 5,439,715 - -0.7 5,439,715 - -2.2 5,439,715 - -1.2 5,439,715 - -1.6 5,439,715 - -0.7 5,439,716 + +1.7 5,439,716 + +0.1 5,439,716 + -0.3 5,439,716 + +1.7 5,439,716 + -0.9 5,439,716 + +0.9 5,439,716 + -0.2 5,439,717 - -0.8 5,439,717 - +2.5 5,439,717 - -0.9 5,439,717 - -1.0 5,439,717 - -2.4 5,439,717 - -0.5 5,439,717 - -1.7 5,439,717 - -0.7 5,439,717 - -0.3 5,439,717 - -1.0 5,439,717 - -1.1 5,439,720 + +0.3 5,439,720 + -2.1 5,439,721 - +0.2 5,439,736 - +0.3 5,439,742 + -0.1 5,439,742 + -0.2 5,439,742 + -0.2 5,439,743 - -0.5 5,439,743 - +1.2 5,439,769 + -0.1 5,439,769 + -0.7 5,439,952 - Psyr_4577 0.30 +0.5 5,440,068 + Psyr_4577 0.48 -2.4 5,440,069 - Psyr_4577 0.48 -1.3 5,440,069 - Psyr_4577 0.48 -0.7 5,440,069 - Psyr_4577 0.48 -1.5 5,440,114 - Psyr_4577 0.55 -1.4 5,440,151 + Psyr_4577 0.61 -2.1 5,440,151 + Psyr_4577 0.61 -0.1 5,440,151 + Psyr_4577 0.61 +0.4 5,440,152 - Psyr_4577 0.61 -0.7 5,440,152 - Psyr_4577 0.61 -0.6 5,440,413 - +0.3 5,440,413 - +0.3 5,440,413 - -0.8 5,440,488 + Psyr_4578 0.10 -0.7 5,440,488 + Psyr_4578 0.10 -0.7 5,440,488 + Psyr_4578 0.10 +0.7 5,440,778 + Psyr_4578 0.52 -0.7 5,440,779 - Psyr_4578 0.52 -0.2 5,440,779 - Psyr_4578 0.52 +0.1 5,440,779 - Psyr_4578 0.52 -0.5 5,440,799 + Psyr_4578 0.55 -0.8 5,440,799 + Psyr_4578 0.55 -1.9 5,440,799 + Psyr_4578 0.55 +1.1 5,440,800 - Psyr_4578 0.55 +0.9 5,440,800 - Psyr_4578 0.55 -1.1 5,440,801 + Psyr_4578 0.55 +0.2 5,440,801 + Psyr_4578 0.55 -0.6 5,440,836 + Psyr_4578 0.60 +0.1 5,440,837 - Psyr_4578 0.61 -0.4 5,440,837 - Psyr_4578 0.61 -1.2 5,441,087 + +2.3 5,441,087 + -1.1 5,441,087 + -1.0 5,441,087 + -0.7 5,441,087 + +0.4 5,441,087 + +0.2 5,441,087 + +1.3 5,441,087 + +0.5 5,441,087 + -0.4 5,441,087 + -0.5 5,441,087 + +0.5 5,441,087 + -1.5 5,441,087 + -0.7 5,441,087 + -2.4 5,441,087 + -0.6 5,441,087 + +0.2 5,441,087 + +0.3 5,441,087 + +0.9 5,441,087 + -1.1 5,441,087 + -1.3 5,441,087 + +0.0 5,441,087 + +1.7 5,441,087 + +0.3 5,441,087 + -1.7 5,441,087 + +0.9 5,441,087 + +0.6 5,441,087 + -2.5 5,441,087 + -1.4 5,441,087 + +0.2 5,441,087 + -1.3 5,441,087 + -0.7 5,441,087 + -0.3 5,441,088 - -1.3 5,441,088 - +1.3 5,441,088 - -0.5 5,441,088 - -0.3 5,441,088 - -0.1 5,441,088 - +1.2 5,441,088 - +0.5 5,441,088 - -1.4 5,441,088 - +0.4 5,441,088 - -0.5 5,441,088 - -0.1 5,441,088 - +0.0 5,441,088 - +0.5 5,441,088 - -0.9 5,441,088 - -0.5 5,441,088 - -3.4 5,441,088 - -2.0 5,441,166 + +0.4 5,441,167 - +0.5 5,441,257 + Psyr_4579 0.13 +1.1 5,441,360 + Psyr_4579 0.26 -0.9 5,441,360 + Psyr_4579 0.26 -1.1 5,441,384 + Psyr_4579 0.29 -0.7 5,441,384 + Psyr_4579 0.29 -0.1 5,441,384 + Psyr_4579 0.29 -0.1 5,441,384 + Psyr_4579 0.29 -2.2 5,441,385 - Psyr_4579 0.29 -0.1 5,441,385 - Psyr_4579 0.29 -0.1 5,441,385 - Psyr_4579 0.29 -0.7
Or see this region's nucleotide sequence