Experiment: KB with Berberine 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4216 and Psyr_4217 are separated by 95 nucleotides Psyr_4217 and Psyr_4218 are separated by 263 nucleotides
Psyr_4216: Psyr_4216 - regulatory protein, LuxR, at 5,021,667 to 5,022,431
_4216
Psyr_4217: Psyr_4217 - tricorn interacting aminopeptidase F1, Serine peptidase, MEROPS family S33, at 5,022,527 to 5,023,450
_4217
Psyr_4218: Psyr_4218 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 5,023,714 to 5,025,339
_4218
Position (kb) 5022
5023
5024 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5021.550 kb on + strand at 5021.550 kb on + strand at 5021.560 kb on + strand at 5021.561 kb on - strand at 5021.562 kb on + strand at 5021.563 kb on - strand at 5021.616 kb on - strand at 5021.622 kb on + strand at 5021.622 kb on + strand at 5021.622 kb on + strand at 5021.622 kb on + strand at 5021.622 kb on + strand at 5021.622 kb on + strand at 5021.622 kb on + strand at 5021.622 kb on + strand at 5021.622 kb on + strand at 5021.622 kb on + strand at 5021.623 kb on - strand at 5021.623 kb on - strand at 5021.623 kb on - strand at 5021.623 kb on - strand at 5021.623 kb on - strand at 5021.623 kb on - strand at 5021.624 kb on + strand at 5021.624 kb on + strand at 5021.624 kb on + strand at 5021.624 kb on + strand at 5021.625 kb on - strand at 5021.625 kb on - strand at 5021.625 kb on - strand at 5021.625 kb on - strand at 5021.625 kb on - strand at 5021.625 kb on - strand at 5021.627 kb on + strand at 5021.635 kb on + strand at 5021.635 kb on + strand at 5021.635 kb on + strand at 5021.636 kb on - strand at 5021.636 kb on - strand at 5021.636 kb on - strand at 5021.673 kb on - strand at 5021.673 kb on - strand at 5021.673 kb on - strand at 5021.673 kb on - strand at 5021.714 kb on + strand at 5021.714 kb on + strand at 5021.714 kb on + strand at 5021.715 kb on - strand at 5021.715 kb on - strand at 5021.781 kb on + strand, within Psyr_4216 at 5021.781 kb on + strand, within Psyr_4216 at 5021.781 kb on + strand, within Psyr_4216 at 5021.781 kb on + strand, within Psyr_4216 at 5021.782 kb on - strand, within Psyr_4216 at 5021.787 kb on + strand, within Psyr_4216 at 5021.788 kb on - strand, within Psyr_4216 at 5021.852 kb on + strand, within Psyr_4216 at 5021.852 kb on + strand, within Psyr_4216 at 5021.852 kb on + strand, within Psyr_4216 at 5021.852 kb on + strand, within Psyr_4216 at 5021.852 kb on + strand, within Psyr_4216 at 5021.852 kb on + strand, within Psyr_4216 at 5021.853 kb on - strand, within Psyr_4216 at 5021.853 kb on - strand, within Psyr_4216 at 5021.892 kb on + strand, within Psyr_4216 at 5021.893 kb on - strand, within Psyr_4216 at 5021.895 kb on + strand, within Psyr_4216 at 5021.895 kb on + strand, within Psyr_4216 at 5021.895 kb on + strand, within Psyr_4216 at 5021.895 kb on + strand, within Psyr_4216 at 5021.896 kb on - strand, within Psyr_4216 at 5021.947 kb on + strand, within Psyr_4216 at 5021.955 kb on + strand, within Psyr_4216 at 5021.955 kb on + strand, within Psyr_4216 at 5021.956 kb on - strand, within Psyr_4216 at 5021.956 kb on - strand, within Psyr_4216 at 5021.956 kb on - strand, within Psyr_4216 at 5022.217 kb on + strand, within Psyr_4216 at 5022.329 kb on + strand, within Psyr_4216 at 5022.462 kb on + strand at 5022.463 kb on - strand at 5022.464 kb on + strand at 5022.464 kb on + strand at 5022.464 kb on + strand at 5022.465 kb on - strand at 5022.468 kb on + strand at 5022.468 kb on + strand at 5022.468 kb on + strand at 5022.468 kb on + strand at 5022.468 kb on + strand at 5022.468 kb on + strand at 5022.468 kb on + strand at 5022.468 kb on + strand at 5022.468 kb on + strand at 5022.468 kb on + strand at 5022.468 kb on + strand at 5022.468 kb on + strand at 5022.468 kb on + strand at 5022.469 kb on - strand at 5022.469 kb on - strand at 5022.469 kb on - strand at 5022.469 kb on - strand at 5022.469 kb on - strand at 5022.469 kb on - strand at 5022.469 kb on - strand at 5022.469 kb on - strand at 5022.469 kb on - strand at 5022.507 kb on - strand at 5022.535 kb on + strand at 5022.535 kb on + strand at 5022.535 kb on + strand at 5022.535 kb on + strand at 5022.535 kb on + strand at 5022.536 kb on - strand at 5022.536 kb on - strand at 5022.536 kb on - strand at 5022.536 kb on - strand at 5022.536 kb on - strand at 5022.652 kb on + strand, within Psyr_4217 at 5022.652 kb on + strand, within Psyr_4217 at 5022.652 kb on + strand, within Psyr_4217 at 5022.653 kb on - strand, within Psyr_4217 at 5022.653 kb on - strand, within Psyr_4217 at 5022.653 kb on - strand, within Psyr_4217 at 5022.653 kb on - strand, within Psyr_4217 at 5022.662 kb on + strand, within Psyr_4217 at 5022.662 kb on + strand, within Psyr_4217 at 5022.663 kb on - strand, within Psyr_4217 at 5022.663 kb on - strand, within Psyr_4217 at 5022.713 kb on + strand, within Psyr_4217 at 5022.823 kb on + strand, within Psyr_4217 at 5022.824 kb on - strand, within Psyr_4217 at 5022.836 kb on + strand, within Psyr_4217 at 5022.836 kb on + strand, within Psyr_4217 at 5022.836 kb on + strand, within Psyr_4217 at 5022.836 kb on + strand, within Psyr_4217 at 5022.836 kb on + strand, within Psyr_4217 at 5022.837 kb on - strand, within Psyr_4217 at 5022.837 kb on - strand, within Psyr_4217 at 5022.837 kb on - strand, within Psyr_4217 at 5022.837 kb on - strand, within Psyr_4217 at 5023.073 kb on + strand, within Psyr_4217 at 5023.073 kb on + strand, within Psyr_4217 at 5023.073 kb on + strand, within Psyr_4217 at 5023.073 kb on + strand, within Psyr_4217 at 5023.073 kb on + strand, within Psyr_4217 at 5023.073 kb on + strand, within Psyr_4217 at 5023.074 kb on - strand, within Psyr_4217 at 5023.116 kb on + strand, within Psyr_4217 at 5023.116 kb on + strand, within Psyr_4217 at 5023.116 kb on + strand, within Psyr_4217 at 5023.116 kb on + strand, within Psyr_4217 at 5023.117 kb on - strand, within Psyr_4217 at 5023.117 kb on - strand, within Psyr_4217 at 5023.123 kb on + strand, within Psyr_4217 at 5023.123 kb on + strand, within Psyr_4217 at 5023.124 kb on - strand, within Psyr_4217 at 5023.157 kb on + strand, within Psyr_4217 at 5023.158 kb on - strand, within Psyr_4217 at 5023.271 kb on + strand, within Psyr_4217 at 5023.271 kb on + strand, within Psyr_4217 at 5023.271 kb on + strand, within Psyr_4217 at 5023.272 kb on - strand, within Psyr_4217 at 5023.272 kb on - strand, within Psyr_4217 at 5023.272 kb on - strand, within Psyr_4217 at 5023.305 kb on - strand, within Psyr_4217 at 5023.357 kb on + strand, within Psyr_4217 at 5023.357 kb on + strand, within Psyr_4217 at 5023.357 kb on + strand, within Psyr_4217 at 5023.357 kb on + strand, within Psyr_4217 at 5023.358 kb on - strand at 5023.358 kb on - strand at 5023.358 kb on - strand at 5023.358 kb on - strand at 5023.358 kb on - strand at 5023.358 kb on - strand at 5023.358 kb on - strand at 5023.368 kb on + strand at 5023.368 kb on + strand at 5023.368 kb on + strand at 5023.368 kb on + strand at 5023.368 kb on + strand at 5023.368 kb on + strand at 5023.368 kb on + strand at 5023.369 kb on - strand at 5023.369 kb on - strand at 5023.387 kb on + strand at 5023.387 kb on + strand at 5023.388 kb on - strand at 5023.454 kb on + strand at 5023.455 kb on - strand at 5023.498 kb on + strand at 5023.501 kb on + strand at 5023.502 kb on - strand at 5023.534 kb on + strand at 5023.535 kb on - strand at 5023.600 kb on + strand at 5023.601 kb on - strand at 5023.601 kb on - strand at 5023.601 kb on - strand at 5023.601 kb on - strand at 5023.601 kb on - strand at 5023.612 kb on + strand at 5023.612 kb on + strand at 5023.612 kb on + strand at 5023.665 kb on - strand at 5023.678 kb on + strand at 5023.679 kb on - strand at 5023.679 kb on - strand at 5023.679 kb on - strand at 5023.679 kb on - strand at 5023.770 kb on + strand at 5023.770 kb on + strand at 5023.770 kb on + strand at 5023.770 kb on + strand at 5023.770 kb on + strand at 5023.770 kb on + strand at 5023.770 kb on + strand at 5023.771 kb on - strand at 5023.771 kb on - strand at 5023.771 kb on - strand at 5023.771 kb on - strand at 5023.771 kb on - strand at 5023.804 kb on + strand at 5023.804 kb on + strand at 5023.805 kb on - strand at 5023.805 kb on - strand at 5023.808 kb on + strand at 5023.808 kb on + strand at 5023.808 kb on + strand at 5023.808 kb on + strand at 5023.808 kb on + strand at 5023.808 kb on + strand at 5023.808 kb on + strand at 5023.809 kb on - strand at 5023.809 kb on - strand at 5023.809 kb on - strand at 5023.809 kb on - strand at 5023.809 kb on - strand at 5023.809 kb on - strand at 5023.844 kb on + strand at 5023.844 kb on + strand at 5023.844 kb on + strand at 5023.844 kb on + strand at 5023.844 kb on + strand at 5023.844 kb on + strand at 5023.844 kb on + strand at 5023.844 kb on + strand at 5023.844 kb on + strand at 5023.844 kb on + strand at 5023.844 kb on + strand at 5023.844 kb on + strand at 5023.844 kb on + strand at 5023.844 kb on + strand at 5023.845 kb on - strand at 5023.845 kb on - strand at 5023.845 kb on - strand at 5023.845 kb on - strand at 5023.845 kb on - strand at 5023.845 kb on - strand at 5023.845 kb on - strand at 5023.845 kb on - strand at 5023.845 kb on - strand at 5023.845 kb on - strand at 5023.845 kb on - strand at 5023.845 kb on - strand at 5023.845 kb on - strand at 5023.952 kb on + strand, within Psyr_4218 at 5023.953 kb on - strand, within Psyr_4218 at 5024.017 kb on + strand, within Psyr_4218 at 5024.089 kb on + strand, within Psyr_4218 at 5024.089 kb on + strand, within Psyr_4218 at 5024.090 kb on - strand, within Psyr_4218 at 5024.090 kb on - strand, within Psyr_4218 at 5024.090 kb on - strand, within Psyr_4218 at 5024.090 kb on - strand, within Psyr_4218 at 5024.090 kb on - strand, within Psyr_4218 at 5024.090 kb on - strand, within Psyr_4218 at 5024.090 kb on - strand, within Psyr_4218 at 5024.090 kb on - strand, within Psyr_4218 at 5024.189 kb on - strand, within Psyr_4218 at 5024.210 kb on + strand at 5024.266 kb on + strand, within Psyr_4218 at 5024.266 kb on + strand, within Psyr_4218 at 5024.266 kb on + strand, within Psyr_4218 at 5024.267 kb on - strand, within Psyr_4218 at 5024.267 kb on - strand, within Psyr_4218 at 5024.327 kb on + strand, within Psyr_4218
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Berberine 250 ug/ml remove 5,021,550 + +0.5 5,021,550 + -2.0 5,021,560 + +0.9 5,021,561 - -0.5 5,021,562 + +0.1 5,021,563 - +0.0 5,021,616 - -0.2 5,021,622 + +0.0 5,021,622 + +0.3 5,021,622 + -0.2 5,021,622 + -1.2 5,021,622 + +2.6 5,021,622 + -0.1 5,021,622 + -0.4 5,021,622 + -1.8 5,021,622 + -0.2 5,021,622 + -0.5 5,021,623 - -0.2 5,021,623 - -1.0 5,021,623 - +1.0 5,021,623 - +0.0 5,021,623 - -0.1 5,021,623 - +0.3 5,021,624 + +0.7 5,021,624 + +0.2 5,021,624 + -1.3 5,021,624 + +0.3 5,021,625 - -0.2 5,021,625 - -0.5 5,021,625 - +0.5 5,021,625 - -0.1 5,021,625 - +0.8 5,021,625 - +1.4 5,021,627 + +0.5 5,021,635 + -0.6 5,021,635 + +0.2 5,021,635 + -3.6 5,021,636 - -1.2 5,021,636 - +0.3 5,021,636 - -0.4 5,021,673 - +0.6 5,021,673 - +0.5 5,021,673 - +0.3 5,021,673 - +1.0 5,021,714 + -0.6 5,021,714 + -0.2 5,021,714 + +0.2 5,021,715 - +1.4 5,021,715 - +0.8 5,021,781 + Psyr_4216 0.15 +0.3 5,021,781 + Psyr_4216 0.15 -0.8 5,021,781 + Psyr_4216 0.15 -0.4 5,021,781 + Psyr_4216 0.15 +0.0 5,021,782 - Psyr_4216 0.15 +0.5 5,021,787 + Psyr_4216 0.16 -0.2 5,021,788 - Psyr_4216 0.16 +0.2 5,021,852 + Psyr_4216 0.24 -0.7 5,021,852 + Psyr_4216 0.24 +2.0 5,021,852 + Psyr_4216 0.24 -1.0 5,021,852 + Psyr_4216 0.24 +1.2 5,021,852 + Psyr_4216 0.24 -0.6 5,021,852 + Psyr_4216 0.24 -0.6 5,021,853 - Psyr_4216 0.24 -0.6 5,021,853 - Psyr_4216 0.24 -0.8 5,021,892 + Psyr_4216 0.29 -0.4 5,021,893 - Psyr_4216 0.30 +0.7 5,021,895 + Psyr_4216 0.30 +0.0 5,021,895 + Psyr_4216 0.30 +0.0 5,021,895 + Psyr_4216 0.30 -0.6 5,021,895 + Psyr_4216 0.30 -0.2 5,021,896 - Psyr_4216 0.30 -0.5 5,021,947 + Psyr_4216 0.37 -0.3 5,021,955 + Psyr_4216 0.38 -0.1 5,021,955 + Psyr_4216 0.38 +0.9 5,021,956 - Psyr_4216 0.38 +0.2 5,021,956 - Psyr_4216 0.38 -0.5 5,021,956 - Psyr_4216 0.38 -0.7 5,022,217 + Psyr_4216 0.72 -1.1 5,022,329 + Psyr_4216 0.87 +0.7 5,022,462 + +0.6 5,022,463 - -0.1 5,022,464 + -1.2 5,022,464 + +0.3 5,022,464 + -0.3 5,022,465 - -1.2 5,022,468 + +0.5 5,022,468 + +0.6 5,022,468 + +0.0 5,022,468 + +0.4 5,022,468 + -0.6 5,022,468 + -0.3 5,022,468 + +2.6 5,022,468 + +1.5 5,022,468 + -0.3 5,022,468 + -0.6 5,022,468 + +0.1 5,022,468 + +1.0 5,022,468 + -0.6 5,022,469 - -0.8 5,022,469 - +0.2 5,022,469 - -1.2 5,022,469 - -0.7 5,022,469 - +0.0 5,022,469 - +0.4 5,022,469 - +0.6 5,022,469 - -0.1 5,022,469 - -0.4 5,022,507 - -0.9 5,022,535 + -0.0 5,022,535 + -0.1 5,022,535 + -0.7 5,022,535 + +0.4 5,022,535 + +0.2 5,022,536 - -0.2 5,022,536 - -0.1 5,022,536 - -0.2 5,022,536 - +0.7 5,022,536 - +1.0 5,022,652 + Psyr_4217 0.14 +1.0 5,022,652 + Psyr_4217 0.14 +0.2 5,022,652 + Psyr_4217 0.14 -1.6 5,022,653 - Psyr_4217 0.14 -1.0 5,022,653 - Psyr_4217 0.14 -0.1 5,022,653 - Psyr_4217 0.14 +1.0 5,022,653 - Psyr_4217 0.14 -0.1 5,022,662 + Psyr_4217 0.15 +0.0 5,022,662 + Psyr_4217 0.15 +0.8 5,022,663 - Psyr_4217 0.15 -0.1 5,022,663 - Psyr_4217 0.15 -0.3 5,022,713 + Psyr_4217 0.20 -1.1 5,022,823 + Psyr_4217 0.32 +0.3 5,022,824 - Psyr_4217 0.32 +0.0 5,022,836 + Psyr_4217 0.33 +0.1 5,022,836 + Psyr_4217 0.33 +0.0 5,022,836 + Psyr_4217 0.33 +0.8 5,022,836 + Psyr_4217 0.33 -0.7 5,022,836 + Psyr_4217 0.33 -0.9 5,022,837 - Psyr_4217 0.34 -0.6 5,022,837 - Psyr_4217 0.34 +0.4 5,022,837 - Psyr_4217 0.34 -0.3 5,022,837 - Psyr_4217 0.34 -0.7 5,023,073 + Psyr_4217 0.59 -0.8 5,023,073 + Psyr_4217 0.59 +0.4 5,023,073 + Psyr_4217 0.59 +0.8 5,023,073 + Psyr_4217 0.59 +1.8 5,023,073 + Psyr_4217 0.59 -1.3 5,023,073 + Psyr_4217 0.59 -1.1 5,023,074 - Psyr_4217 0.59 -0.2 5,023,116 + Psyr_4217 0.64 -1.1 5,023,116 + Psyr_4217 0.64 +0.4 5,023,116 + Psyr_4217 0.64 -1.2 5,023,116 + Psyr_4217 0.64 -1.5 5,023,117 - Psyr_4217 0.64 -1.7 5,023,117 - Psyr_4217 0.64 +1.6 5,023,123 + Psyr_4217 0.65 -0.8 5,023,123 + Psyr_4217 0.65 +0.6 5,023,124 - Psyr_4217 0.65 +0.0 5,023,157 + Psyr_4217 0.68 -1.9 5,023,158 - Psyr_4217 0.68 +0.4 5,023,271 + Psyr_4217 0.81 +0.7 5,023,271 + Psyr_4217 0.81 -1.1 5,023,271 + Psyr_4217 0.81 -1.2 5,023,272 - Psyr_4217 0.81 +1.4 5,023,272 - Psyr_4217 0.81 -2.3 5,023,272 - Psyr_4217 0.81 -0.2 5,023,305 - Psyr_4217 0.84 +0.3 5,023,357 + Psyr_4217 0.90 -0.2 5,023,357 + Psyr_4217 0.90 -1.5 5,023,357 + Psyr_4217 0.90 -0.6 5,023,357 + Psyr_4217 0.90 +0.0 5,023,358 - +2.0 5,023,358 - -1.0 5,023,358 - +1.0 5,023,358 - -0.1 5,023,358 - +0.2 5,023,358 - +0.7 5,023,358 - -2.0 5,023,368 + -0.7 5,023,368 + -0.7 5,023,368 + +0.7 5,023,368 + -0.6 5,023,368 + -0.2 5,023,368 + -0.5 5,023,368 + -0.2 5,023,369 - -2.3 5,023,369 - +0.7 5,023,387 + -0.3 5,023,387 + -0.7 5,023,388 - -0.4 5,023,454 + -2.4 5,023,455 - -0.3 5,023,498 + -1.4 5,023,501 + -0.2 5,023,502 - -0.6 5,023,534 + -0.1 5,023,535 - -0.3 5,023,600 + +1.0 5,023,601 - +1.0 5,023,601 - -1.6 5,023,601 - +1.2 5,023,601 - +1.3 5,023,601 - +1.5 5,023,612 + +1.2 5,023,612 + +0.0 5,023,612 + +0.9 5,023,665 - -0.4 5,023,678 + +0.5 5,023,679 - -1.0 5,023,679 - -1.9 5,023,679 - -1.3 5,023,679 - -0.2 5,023,770 + -1.0 5,023,770 + -3.2 5,023,770 + +0.4 5,023,770 + -0.3 5,023,770 + -0.6 5,023,770 + +1.3 5,023,770 + -2.7 5,023,771 - -0.3 5,023,771 - +0.0 5,023,771 - +0.2 5,023,771 - +0.8 5,023,771 - +1.1 5,023,804 + -1.7 5,023,804 + +0.8 5,023,805 - +1.6 5,023,805 - -2.3 5,023,808 + +1.0 5,023,808 + +2.2 5,023,808 + +0.4 5,023,808 + +0.3 5,023,808 + -2.7 5,023,808 + +0.6 5,023,808 + +0.5 5,023,809 - +0.4 5,023,809 - +3.0 5,023,809 - +1.5 5,023,809 - -0.6 5,023,809 - +0.0 5,023,809 - +0.0 5,023,844 + -0.5 5,023,844 + -1.9 5,023,844 + +1.2 5,023,844 + +0.3 5,023,844 + -0.6 5,023,844 + -1.1 5,023,844 + +0.4 5,023,844 + -1.7 5,023,844 + +0.1 5,023,844 + +2.0 5,023,844 + -0.1 5,023,844 + -0.0 5,023,844 + +0.4 5,023,844 + -0.8 5,023,845 - -0.6 5,023,845 - -1.8 5,023,845 - -2.4 5,023,845 - -0.8 5,023,845 - -0.8 5,023,845 - +0.7 5,023,845 - +0.4 5,023,845 - +0.7 5,023,845 - +0.8 5,023,845 - +0.3 5,023,845 - -1.0 5,023,845 - -1.3 5,023,845 - -0.5 5,023,952 + Psyr_4218 0.15 +1.0 5,023,953 - Psyr_4218 0.15 -1.0 5,024,017 + Psyr_4218 0.19 -1.1 5,024,089 + Psyr_4218 0.23 -0.5 5,024,089 + Psyr_4218 0.23 -0.6 5,024,090 - Psyr_4218 0.23 -0.6 5,024,090 - Psyr_4218 0.23 -0.1 5,024,090 - Psyr_4218 0.23 -0.7 5,024,090 - Psyr_4218 0.23 -1.1 5,024,090 - Psyr_4218 0.23 +0.4 5,024,090 - Psyr_4218 0.23 -0.4 5,024,090 - Psyr_4218 0.23 -0.1 5,024,090 - Psyr_4218 0.23 -1.2 5,024,189 - Psyr_4218 0.29 +0.4 5,024,210 + +0.0 5,024,266 + Psyr_4218 0.34 -0.5 5,024,266 + Psyr_4218 0.34 -0.1 5,024,266 + Psyr_4218 0.34 -0.8 5,024,267 - Psyr_4218 0.34 -0.1 5,024,267 - Psyr_4218 0.34 +0.6 5,024,327 + Psyr_4218 0.38 -0.7
Or see this region's nucleotide sequence