Experiment: KB with Berberine 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4206 and Psyr_4207 are separated by 15 nucleotides Psyr_4207 and Psyr_4208 are separated by 391 nucleotides Psyr_4208 and Psyr_4209 are separated by 83 nucleotides
Psyr_4206: Psyr_4206 - GGDEF domain protein, at 5,008,801 to 5,009,886
_4206
Psyr_4207: Psyr_4207 - GCN5-related N-acetyltransferase, at 5,009,902 to 5,010,333
_4207
Psyr_4208: Psyr_4208 - heme catalase/peroxidase, at 5,010,725 to 5,012,995
_4208
Psyr_4209: Psyr_4209 - PAC motif:Bacterial chemotaxis sensory transducer, at 5,013,079 to 5,014,383
_4209
Position (kb) 5010
5011
5012
5013 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5009.761 kb on + strand, within Psyr_4206 at 5009.761 kb on + strand at 5009.762 kb on - strand, within Psyr_4206 at 5009.762 kb on - strand, within Psyr_4206 at 5009.762 kb on - strand, within Psyr_4206 at 5009.762 kb on - strand, within Psyr_4206 at 5009.762 kb on - strand, within Psyr_4206 at 5009.762 kb on - strand, within Psyr_4206 at 5009.762 kb on - strand, within Psyr_4206 at 5009.764 kb on + strand, within Psyr_4206 at 5009.764 kb on + strand, within Psyr_4206 at 5009.765 kb on - strand, within Psyr_4206 at 5009.765 kb on - strand, within Psyr_4206 at 5009.786 kb on + strand at 5009.786 kb on + strand at 5009.786 kb on + strand at 5009.786 kb on + strand at 5009.786 kb on + strand at 5009.786 kb on + strand at 5009.786 kb on + strand at 5009.786 kb on + strand at 5009.786 kb on + strand at 5009.786 kb on + strand at 5009.786 kb on + strand at 5009.787 kb on - strand at 5009.787 kb on - strand at 5009.787 kb on - strand at 5009.787 kb on - strand at 5009.787 kb on - strand at 5009.787 kb on - strand at 5009.787 kb on - strand at 5009.787 kb on - strand at 5009.787 kb on - strand at 5009.787 kb on - strand at 5009.787 kb on - strand at 5009.787 kb on - strand at 5009.787 kb on - strand at 5009.787 kb on - strand at 5009.787 kb on - strand at 5009.787 kb on - strand at 5009.790 kb on + strand at 5009.791 kb on - strand at 5009.874 kb on + strand at 5009.875 kb on - strand at 5009.884 kb on + strand at 5009.997 kb on + strand, within Psyr_4207 at 5009.997 kb on + strand, within Psyr_4207 at 5009.998 kb on - strand, within Psyr_4207 at 5009.998 kb on - strand, within Psyr_4207 at 5009.998 kb on - strand, within Psyr_4207 at 5009.998 kb on - strand, within Psyr_4207 at 5010.026 kb on + strand, within Psyr_4207 at 5010.026 kb on + strand, within Psyr_4207 at 5010.026 kb on + strand, within Psyr_4207 at 5010.026 kb on + strand, within Psyr_4207 at 5010.026 kb on + strand, within Psyr_4207 at 5010.027 kb on - strand, within Psyr_4207 at 5010.027 kb on - strand, within Psyr_4207 at 5010.027 kb on - strand, within Psyr_4207 at 5010.027 kb on - strand, within Psyr_4207 at 5010.027 kb on - strand, within Psyr_4207 at 5010.027 kb on - strand, within Psyr_4207 at 5010.027 kb on - strand, within Psyr_4207 at 5010.027 kb on - strand at 5010.030 kb on + strand, within Psyr_4207 at 5010.218 kb on + strand, within Psyr_4207 at 5010.218 kb on + strand, within Psyr_4207 at 5010.299 kb on + strand at 5010.300 kb on - strand at 5010.300 kb on - strand at 5010.300 kb on - strand at 5010.338 kb on + strand at 5010.338 kb on + strand at 5010.374 kb on - strand at 5010.442 kb on + strand at 5010.443 kb on - strand at 5010.443 kb on - strand at 5010.446 kb on - strand at 5010.446 kb on - strand at 5010.476 kb on + strand at 5010.477 kb on - strand at 5010.519 kb on + strand at 5010.519 kb on + strand at 5010.520 kb on - strand at 5010.592 kb on - strand at 5010.597 kb on + strand at 5010.597 kb on + strand at 5010.598 kb on - strand at 5010.717 kb on + strand at 5010.718 kb on - strand at 5010.718 kb on - strand at 5010.718 kb on - strand at 5010.866 kb on + strand at 5010.867 kb on - strand at 5010.968 kb on + strand, within Psyr_4208 at 5010.968 kb on + strand, within Psyr_4208 at 5011.010 kb on - strand, within Psyr_4208 at 5011.139 kb on + strand, within Psyr_4208 at 5011.140 kb on - strand, within Psyr_4208 at 5011.140 kb on - strand, within Psyr_4208 at 5011.140 kb on - strand, within Psyr_4208 at 5011.269 kb on - strand, within Psyr_4208 at 5011.454 kb on + strand, within Psyr_4208 at 5011.454 kb on + strand, within Psyr_4208 at 5011.454 kb on + strand, within Psyr_4208 at 5011.454 kb on + strand, within Psyr_4208 at 5011.454 kb on + strand, within Psyr_4208 at 5011.454 kb on + strand, within Psyr_4208 at 5011.454 kb on + strand, within Psyr_4208 at 5011.455 kb on - strand, within Psyr_4208 at 5011.455 kb on - strand, within Psyr_4208 at 5011.455 kb on - strand, within Psyr_4208 at 5011.455 kb on - strand, within Psyr_4208 at 5012.215 kb on + strand, within Psyr_4208 at 5012.216 kb on - strand, within Psyr_4208 at 5012.216 kb on - strand, within Psyr_4208 at 5012.216 kb on - strand, within Psyr_4208 at 5012.216 kb on - strand, within Psyr_4208 at 5012.216 kb on - strand, within Psyr_4208 at 5012.338 kb on + strand, within Psyr_4208 at 5012.573 kb on + strand, within Psyr_4208 at 5012.573 kb on + strand, within Psyr_4208 at 5012.573 kb on + strand, within Psyr_4208 at 5012.573 kb on + strand, within Psyr_4208 at 5012.574 kb on - strand, within Psyr_4208 at 5012.574 kb on - strand, within Psyr_4208 at 5012.574 kb on - strand, within Psyr_4208 at 5012.574 kb on - strand, within Psyr_4208 at 5012.574 kb on - strand, within Psyr_4208 at 5012.574 kb on - strand, within Psyr_4208 at 5012.574 kb on - strand, within Psyr_4208 at 5012.646 kb on + strand, within Psyr_4208 at 5012.646 kb on + strand, within Psyr_4208 at 5012.646 kb on + strand, within Psyr_4208 at 5012.647 kb on - strand, within Psyr_4208 at 5012.647 kb on - strand, within Psyr_4208 at 5012.797 kb on + strand at 5012.903 kb on + strand at 5012.903 kb on + strand at 5012.903 kb on + strand at 5012.903 kb on + strand at 5012.904 kb on - strand at 5012.904 kb on - strand at 5012.904 kb on - strand at 5012.904 kb on - strand at 5012.904 kb on - strand at 5012.998 kb on + strand at 5012.998 kb on + strand at 5012.998 kb on + strand at 5012.998 kb on + strand at 5012.998 kb on + strand at 5012.998 kb on + strand at 5012.998 kb on + strand at 5012.998 kb on + strand at 5012.999 kb on - strand at 5012.999 kb on - strand at 5012.999 kb on - strand at 5012.999 kb on - strand at 5012.999 kb on - strand at 5012.999 kb on - strand at 5012.999 kb on - strand at 5012.999 kb on - strand at 5012.999 kb on - strand at 5013.078 kb on - strand at 5013.249 kb on + strand, within Psyr_4209 at 5013.259 kb on + strand, within Psyr_4209 at 5013.259 kb on + strand, within Psyr_4209 at 5013.259 kb on + strand, within Psyr_4209 at 5013.260 kb on - strand, within Psyr_4209 at 5013.260 kb on - strand, within Psyr_4209 at 5013.260 kb on - strand, within Psyr_4209 at 5013.260 kb on - strand, within Psyr_4209 at 5013.260 kb on - strand, within Psyr_4209 at 5013.260 kb on - strand, within Psyr_4209 at 5013.260 kb on - strand, within Psyr_4209 at 5013.260 kb on - strand, within Psyr_4209 at 5013.260 kb on - strand, within Psyr_4209 at 5013.260 kb on - strand, within Psyr_4209 at 5013.260 kb on - strand, within Psyr_4209 at 5013.569 kb on - strand, within Psyr_4209 at 5013.569 kb on - strand, within Psyr_4209 at 5013.569 kb on - strand, within Psyr_4209 at 5013.672 kb on - strand, within Psyr_4209 at 5013.723 kb on + strand, within Psyr_4209 at 5013.723 kb on + strand, within Psyr_4209 at 5013.817 kb on + strand, within Psyr_4209 at 5013.836 kb on + strand, within Psyr_4209 at 5013.836 kb on + strand, within Psyr_4209 at 5013.836 kb on + strand, within Psyr_4209 at 5013.836 kb on + strand, within Psyr_4209 at 5013.837 kb on - strand, within Psyr_4209 at 5013.837 kb on - strand, within Psyr_4209 at 5013.837 kb on - strand, within Psyr_4209 at 5013.848 kb on + strand, within Psyr_4209 at 5013.848 kb on + strand, within Psyr_4209 at 5013.849 kb on - strand, within Psyr_4209 at 5013.948 kb on + strand, within Psyr_4209 at 5013.948 kb on + strand, within Psyr_4209 at 5013.949 kb on - strand, within Psyr_4209 at 5013.985 kb on + strand, within Psyr_4209 at 5013.986 kb on - strand, within Psyr_4209 at 5013.986 kb on - strand, within Psyr_4209 at 5013.986 kb on - strand, within Psyr_4209
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Berberine 250 ug/ml remove 5,009,761 + Psyr_4206 0.88 -1.3 5,009,761 + +1.0 5,009,762 - Psyr_4206 0.88 -0.6 5,009,762 - Psyr_4206 0.88 -0.8 5,009,762 - Psyr_4206 0.88 +1.0 5,009,762 - Psyr_4206 0.88 -1.4 5,009,762 - Psyr_4206 0.88 -0.2 5,009,762 - Psyr_4206 0.88 -0.6 5,009,762 - Psyr_4206 0.88 -0.1 5,009,764 + Psyr_4206 0.89 -1.6 5,009,764 + Psyr_4206 0.89 -0.7 5,009,765 - Psyr_4206 0.89 -1.2 5,009,765 - Psyr_4206 0.89 -1.3 5,009,786 + -0.3 5,009,786 + -0.7 5,009,786 + +0.2 5,009,786 + +0.9 5,009,786 + -0.4 5,009,786 + -1.0 5,009,786 + +0.9 5,009,786 + -1.4 5,009,786 + -2.4 5,009,786 + -0.4 5,009,786 + +0.6 5,009,787 - +0.4 5,009,787 - +0.7 5,009,787 - +0.1 5,009,787 - +0.0 5,009,787 - -1.0 5,009,787 - -1.1 5,009,787 - -2.4 5,009,787 - -0.4 5,009,787 - +1.0 5,009,787 - +0.0 5,009,787 - -0.8 5,009,787 - +1.0 5,009,787 - +1.2 5,009,787 - +0.5 5,009,787 - +1.3 5,009,787 - +1.2 5,009,790 + +1.0 5,009,791 - +0.0 5,009,874 + +0.0 5,009,875 - +0.2 5,009,884 + -0.8 5,009,997 + Psyr_4207 0.22 -1.8 5,009,997 + Psyr_4207 0.22 -0.1 5,009,998 - Psyr_4207 0.22 +1.1 5,009,998 - Psyr_4207 0.22 +0.2 5,009,998 - Psyr_4207 0.22 -0.6 5,009,998 - Psyr_4207 0.22 -0.6 5,010,026 + Psyr_4207 0.29 -0.4 5,010,026 + Psyr_4207 0.29 -1.4 5,010,026 + Psyr_4207 0.29 +0.1 5,010,026 + Psyr_4207 0.29 +0.4 5,010,026 + Psyr_4207 0.29 -0.3 5,010,027 - Psyr_4207 0.29 -0.1 5,010,027 - Psyr_4207 0.29 +0.1 5,010,027 - Psyr_4207 0.29 +1.0 5,010,027 - Psyr_4207 0.29 +0.8 5,010,027 - Psyr_4207 0.29 -0.8 5,010,027 - Psyr_4207 0.29 +2.6 5,010,027 - Psyr_4207 0.29 +0.4 5,010,027 - -0.3 5,010,030 + Psyr_4207 0.30 +0.2 5,010,218 + Psyr_4207 0.73 -0.8 5,010,218 + Psyr_4207 0.73 +1.9 5,010,299 + -0.4 5,010,300 - -2.3 5,010,300 - +0.7 5,010,300 - -1.2 5,010,338 + +0.3 5,010,338 + +0.2 5,010,374 - -0.2 5,010,442 + +0.7 5,010,443 - -0.3 5,010,443 - -0.3 5,010,446 - +3.6 5,010,446 - +0.3 5,010,476 + +0.6 5,010,477 - +0.5 5,010,519 + +0.0 5,010,519 + -0.6 5,010,520 - -0.2 5,010,592 - -0.3 5,010,597 + +0.3 5,010,597 + -1.0 5,010,598 - +0.6 5,010,717 + +0.4 5,010,718 - +3.6 5,010,718 - -1.4 5,010,718 - -0.4 5,010,866 + +0.3 5,010,867 - +0.8 5,010,968 + Psyr_4208 0.11 -0.8 5,010,968 + Psyr_4208 0.11 +0.1 5,011,010 - Psyr_4208 0.13 -1.1 5,011,139 + Psyr_4208 0.18 -1.2 5,011,140 - Psyr_4208 0.18 -0.0 5,011,140 - Psyr_4208 0.18 +0.4 5,011,140 - Psyr_4208 0.18 +0.1 5,011,269 - Psyr_4208 0.24 -0.4 5,011,454 + Psyr_4208 0.32 -1.7 5,011,454 + Psyr_4208 0.32 +0.8 5,011,454 + Psyr_4208 0.32 +0.6 5,011,454 + Psyr_4208 0.32 +0.6 5,011,454 + Psyr_4208 0.32 -0.2 5,011,454 + Psyr_4208 0.32 -0.5 5,011,454 + Psyr_4208 0.32 -0.4 5,011,455 - Psyr_4208 0.32 -1.0 5,011,455 - Psyr_4208 0.32 -1.2 5,011,455 - Psyr_4208 0.32 +0.5 5,011,455 - Psyr_4208 0.32 -0.4 5,012,215 + Psyr_4208 0.66 -1.3 5,012,216 - Psyr_4208 0.66 +0.0 5,012,216 - Psyr_4208 0.66 +0.3 5,012,216 - Psyr_4208 0.66 -0.7 5,012,216 - Psyr_4208 0.66 +1.4 5,012,216 - Psyr_4208 0.66 -1.8 5,012,338 + Psyr_4208 0.71 -0.1 5,012,573 + Psyr_4208 0.81 +0.6 5,012,573 + Psyr_4208 0.81 -0.5 5,012,573 + Psyr_4208 0.81 -0.9 5,012,573 + Psyr_4208 0.81 -0.9 5,012,574 - Psyr_4208 0.81 +0.7 5,012,574 - Psyr_4208 0.81 -0.9 5,012,574 - Psyr_4208 0.81 +0.2 5,012,574 - Psyr_4208 0.81 +1.3 5,012,574 - Psyr_4208 0.81 +0.3 5,012,574 - Psyr_4208 0.81 +0.1 5,012,574 - Psyr_4208 0.81 -1.8 5,012,646 + Psyr_4208 0.85 -0.2 5,012,646 + Psyr_4208 0.85 -0.5 5,012,646 + Psyr_4208 0.85 -0.3 5,012,647 - Psyr_4208 0.85 +1.0 5,012,647 - Psyr_4208 0.85 -0.1 5,012,797 + -1.8 5,012,903 + -2.2 5,012,903 + +0.1 5,012,903 + -0.4 5,012,903 + +0.2 5,012,904 - +0.4 5,012,904 - +0.0 5,012,904 - -2.0 5,012,904 - +1.0 5,012,904 - -0.5 5,012,998 + -1.2 5,012,998 + +0.3 5,012,998 + -1.2 5,012,998 + -1.3 5,012,998 + +1.0 5,012,998 + +0.8 5,012,998 + +0.2 5,012,998 + -0.5 5,012,999 - +0.8 5,012,999 - +2.0 5,012,999 - -0.3 5,012,999 - -2.7 5,012,999 - +1.6 5,012,999 - -1.6 5,012,999 - -1.3 5,012,999 - +0.6 5,012,999 - -1.7 5,013,078 - +0.2 5,013,249 + Psyr_4209 0.13 -1.2 5,013,259 + Psyr_4209 0.14 -1.1 5,013,259 + Psyr_4209 0.14 -1.4 5,013,259 + Psyr_4209 0.14 +4.0 5,013,260 - Psyr_4209 0.14 +1.0 5,013,260 - Psyr_4209 0.14 -0.4 5,013,260 - Psyr_4209 0.14 +1.4 5,013,260 - Psyr_4209 0.14 -1.0 5,013,260 - Psyr_4209 0.14 -1.3 5,013,260 - Psyr_4209 0.14 +0.4 5,013,260 - Psyr_4209 0.14 +0.0 5,013,260 - Psyr_4209 0.14 +0.1 5,013,260 - Psyr_4209 0.14 +1.0 5,013,260 - Psyr_4209 0.14 +0.4 5,013,260 - Psyr_4209 0.14 -0.2 5,013,569 - Psyr_4209 0.38 -1.2 5,013,569 - Psyr_4209 0.38 -0.5 5,013,569 - Psyr_4209 0.38 +0.2 5,013,672 - Psyr_4209 0.45 +0.4 5,013,723 + Psyr_4209 0.49 +0.3 5,013,723 + Psyr_4209 0.49 -1.6 5,013,817 + Psyr_4209 0.57 -0.4 5,013,836 + Psyr_4209 0.58 -1.2 5,013,836 + Psyr_4209 0.58 +0.4 5,013,836 + Psyr_4209 0.58 -0.2 5,013,836 + Psyr_4209 0.58 +0.8 5,013,837 - Psyr_4209 0.58 +0.9 5,013,837 - Psyr_4209 0.58 +0.1 5,013,837 - Psyr_4209 0.58 +0.2 5,013,848 + Psyr_4209 0.59 -0.6 5,013,848 + Psyr_4209 0.59 -0.1 5,013,849 - Psyr_4209 0.59 +0.0 5,013,948 + Psyr_4209 0.67 -0.1 5,013,948 + Psyr_4209 0.67 +0.5 5,013,949 - Psyr_4209 0.67 +0.3 5,013,985 + Psyr_4209 0.69 -0.3 5,013,986 - Psyr_4209 0.70 +0.0 5,013,986 - Psyr_4209 0.70 +1.0 5,013,986 - Psyr_4209 0.70 -0.9
Or see this region's nucleotide sequence