Experiment: KB with Berberine 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4135 and Psyr_4136 are separated by 22 nucleotides Psyr_4136 and Psyr_4137 are separated by 115 nucleotides Psyr_4137 and Psyr_4138 overlap by 4 nucleotides
Psyr_4135: Psyr_4135 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 4,926,055 to 4,927,320
_4135
Psyr_4136: Psyr_4136 - BolA-like protein, at 4,927,343 to 4,927,582
_4136
Psyr_4137: Psyr_4137 - Sulfate transporter/antisigma-factor antagonist STAS, at 4,927,698 to 4,928,003
_4137
Psyr_4138: Psyr_4138 - Toluene tolerance, at 4,928,000 to 4,928,650
_4138
Position (kb) 4927
4928 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4927.435 kb on - strand, within Psyr_4136 at 4927.435 kb on - strand, within Psyr_4136 at 4927.435 kb on - strand, within Psyr_4136 at 4927.435 kb on - strand, within Psyr_4136 at 4927.435 kb on - strand, within Psyr_4136 at 4927.741 kb on - strand, within Psyr_4137 at 4928.214 kb on + strand, within Psyr_4138 at 4928.331 kb on + strand, within Psyr_4138 at 4928.332 kb on - strand, within Psyr_4138 at 4928.404 kb on - strand, within Psyr_4138 at 4928.404 kb on - strand, within Psyr_4138 at 4928.404 kb on - strand, within Psyr_4138 at 4928.478 kb on + strand, within Psyr_4138 at 4928.479 kb on - strand, within Psyr_4138 at 4928.479 kb on - strand, within Psyr_4138 at 4928.479 kb on - strand, within Psyr_4138 at 4928.503 kb on - strand, within Psyr_4138 at 4928.503 kb on - strand, within Psyr_4138 at 4928.503 kb on - strand, within Psyr_4138
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Berberine 250 ug/ml remove 4,927,435 - Psyr_4136 0.38 -1.2 4,927,435 - Psyr_4136 0.38 -1.1 4,927,435 - Psyr_4136 0.38 +1.4 4,927,435 - Psyr_4136 0.38 -0.3 4,927,435 - Psyr_4136 0.38 +0.3 4,927,741 - Psyr_4137 0.14 +0.0 4,928,214 + Psyr_4138 0.33 -0.3 4,928,331 + Psyr_4138 0.51 +0.0 4,928,332 - Psyr_4138 0.51 -0.6 4,928,404 - Psyr_4138 0.62 +0.0 4,928,404 - Psyr_4138 0.62 -0.9 4,928,404 - Psyr_4138 0.62 +1.3 4,928,478 + Psyr_4138 0.73 +1.8 4,928,479 - Psyr_4138 0.74 +0.2 4,928,479 - Psyr_4138 0.74 -1.8 4,928,479 - Psyr_4138 0.74 -1.1 4,928,503 - Psyr_4138 0.77 +1.6 4,928,503 - Psyr_4138 0.77 -0.6 4,928,503 - Psyr_4138 0.77 -0.6
Or see this region's nucleotide sequence