Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4089

Experiment: KB with Berberine 250 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Berberine 250 ug/ml
4,873,867	+		Psyr_4088	0.26	+1.3
4,873,976	+		Psyr_4088	0.38	+0.0
4,874,081	+		Psyr_4088	0.50	-0.5
4,874,081	+		Psyr_4088	0.50	+0.9
4,874,082	-		Psyr_4088	0.50	+0.2
4,874,082	-		Psyr_4088	0.50	-0.5
4,874,374	+		Psyr_4088	0.81	+1.0
4,874,374	+		Psyr_4088	0.81	-2.0
4,874,375	-		Psyr_4088	0.82	-1.2
4,874,375	-		Psyr_4088	0.82	-0.5
4,874,375	-		Psyr_4088	0.82	-0.3
4,874,375	-		Psyr_4088	0.82	+1.6
4,874,386	+		Psyr_4088	0.83	+1.0
4,874,386	+		Psyr_4088	0.83	-0.4
4,874,386	+		Psyr_4088	0.83	+0.1
4,874,425	+		Psyr_4088	0.87	+1.5
4,874,567	-				-1.1
4,874,668	+				+1.0
4,874,709	+				+0.5
4,874,709	+				-0.5
4,874,709	+				-1.3
4,874,709	+				+1.3
4,874,710	-				+0.0
4,874,710	-				-1.8
4,874,710	-				-2.5
4,874,710	-				+1.3
4,874,796	+		Psyr_4089	0.10	-0.8
4,874,796	+		Psyr_4089	0.10	-1.5
4,874,868	+		Psyr_4089	0.14	+0.4
4,874,869	-		Psyr_4089	0.14	-2.1
4,874,948	+		Psyr_4089	0.18	+1.0
4,874,949	-		Psyr_4089	0.18	+0.3
4,875,061	-		Psyr_4089	0.23	-0.6
4,875,162	+		Psyr_4089	0.28	-2.3
4,875,162	+		Psyr_4089	0.28	-0.2
4,875,163	-		Psyr_4089	0.28	+0.6
4,875,207	+		Psyr_4089	0.30	-1.0
4,875,208	-		Psyr_4089	0.30	-0.6
4,875,270	-		Psyr_4089	0.33	+1.0
4,875,340	-		Psyr_4089	0.37	+0.0
4,875,340	-		Psyr_4089	0.37	-1.8
4,875,340	-		Psyr_4089	0.37	-0.8
4,875,451	-		Psyr_4089	0.42	-1.7
4,875,510	+		Psyr_4089	0.45	+0.4
4,875,510	+		Psyr_4089	0.45	+0.0
4,875,510	+		Psyr_4089	0.45	+0.3
4,875,510	+		Psyr_4089	0.45	+0.0
4,875,510	+		Psyr_4089	0.45	-1.3
4,875,511	-		Psyr_4089	0.45	-0.8
4,875,511	-		Psyr_4089	0.45	-1.0
4,875,702	+		Psyr_4089	0.55	-0.6
4,875,782	-		Psyr_4089	0.59	+1.0
4,875,892	+		Psyr_4089	0.64	+1.0
4,875,892	+		Psyr_4089	0.64	-1.0
4,875,893	-		Psyr_4089	0.64	+2.0
4,875,893	-		Psyr_4089	0.64	-0.6
4,875,901	+		Psyr_4089	0.64	+2.0
4,875,901	+		Psyr_4089	0.64	-1.0
4,875,901	+		Psyr_4089	0.64	+0.4
4,875,902	-		Psyr_4089	0.64	-0.3
4,875,902	-		Psyr_4089	0.64	-1.8
4,875,902	-		Psyr_4089	0.64	-2.1
4,875,902	-		Psyr_4089	0.64	+1.0
4,875,902	-		Psyr_4089	0.64	+2.0
4,876,528	+				-0.6
4,876,528	+				-0.8
4,876,529	-				-1.8
4,876,665	+				-0.7
4,876,846	+		Psyr_4090	0.35	-0.6
4,876,846	+		Psyr_4090	0.35	+1.0
4,876,846	+		Psyr_4090	0.35	-1.8
4,876,846	+		Psyr_4090	0.35	-0.6
4,876,847	-		Psyr_4090	0.36	+0.0
4,876,847	-		Psyr_4090	0.36	+0.2
4,876,847	-		Psyr_4090	0.36	-1.8
4,876,905	+		Psyr_4090	0.46	+1.4
4,876,905	+		Psyr_4090	0.46	+0.0
4,876,905	+		Psyr_4090	0.46	+1.6
4,876,906	-		Psyr_4090	0.46	-1.6
4,876,906	-		Psyr_4090	0.46	+0.4
4,877,040	-		Psyr_4090	0.69	-0.1
4,877,115	+		Psyr_4090	0.82	-1.1
4,877,115	+		Psyr_4090	0.82	-0.2
4,877,115	+		Psyr_4090	0.82	-0.3
4,877,115	+		Psyr_4090	0.82	+0.7
4,877,116	-		Psyr_4090	0.82	+1.0
4,877,116	-		Psyr_4090	0.82	+1.0
4,877,116	-		Psyr_4090	0.82	-1.0
4,877,116	-		Psyr_4090	0.82	-0.6
4,877,116	-		Psyr_4090	0.82	-0.1
4,877,226	+				-0.8
4,877,226	+				-0.2
4,877,226	+				-0.6
4,877,226	+				-0.3
4,877,226	+				-2.0
4,877,227	-				+0.8
4,877,227	-				-1.6
4,877,227	-				-0.7
4,877,279	+				+0.4
4,877,283	+				+0.0
4,877,283	+				+0.1
4,877,284	-				+1.0
4,877,284	-				-1.3
4,877,284	-				-0.1
4,877,285	+				-0.6
4,877,285	+				+0.4
4,877,285	+				-0.3
4,877,285	+				-0.7
4,877,285	+				-0.9
4,877,285	+				+1.2
4,877,285	+				+1.0
4,877,285	+				+1.4
4,877,285	+				+0.2
4,877,285	+				+0.6
4,877,285	+				+1.3
4,877,285	+				+0.6
4,877,285	+				+0.4
4,877,285	+				+1.6
4,877,286	-				-1.0
4,877,286	-				-1.0
4,877,286	-				+1.0
4,877,286	-				+2.0
4,877,286	-				+0.8
4,877,286	-				+0.3
4,877,286	-				-0.3
4,877,286	-				+1.0
4,877,286	-				+1.6
4,877,286	-				-0.1
4,877,286	-				+0.9
4,877,286	-				+1.0
4,877,286	-				-0.4
4,877,356	-				-0.6
4,877,419	+				+0.0
4,877,419	+				+1.0
4,877,419	+				-0.6
4,877,419	+				-1.9
4,877,419	+				-0.1
4,877,419	+				-1.0
4,877,419	+				+0.5
4,877,419	+				-1.3
4,877,419	+				+0.0
4,877,419	+				-0.8
4,877,419	+				-1.7
4,877,419	+				-0.6
4,877,420	-				+0.4
4,877,420	-				-1.1
4,877,420	-				-0.0
4,877,420	-				+0.3
4,877,420	-				-0.1
4,877,427	+				-0.1
4,877,428	-				+0.7
4,877,428	-				+0.4
4,877,431	+				+0.5
4,877,431	+				+2.0
4,877,432	-				+0.7
4,877,432	-				-0.4