Experiment: KB with Berberine 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4042 and Psyr_4043 are separated by 570 nucleotides Psyr_4043 and Psyr_4044 are separated by 40 nucleotides Psyr_4044 and Psyr_4045 are separated by 1 nucleotides Psyr_4045 and Psyr_4046 are separated by 89 nucleotides
Psyr_4042: Psyr_4042 - hypothetical protein, at 4,827,044 to 4,827,484
_4042
Psyr_4043: Psyr_4043 - hypothetical protein, at 4,828,055 to 4,828,288
_4043
Psyr_4044: Psyr_4044 - Phospholipase D/Transphosphatidylase, at 4,828,329 to 4,829,486
_4044
Psyr_4045: Psyr_4045 - YceI, at 4,829,488 to 4,830,069
_4045
Psyr_4046: Psyr_4046 - conserved hypothetical protein, at 4,830,159 to 4,830,488
_4046
Psyr_4047: Psyr_4047 - Beta-lactamase, at 4,830,485 to 4,831,591
_4047
Position (kb) 4828
4829
4830 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4827.366 kb on + strand, within Psyr_4042 at 4827.367 kb on - strand, within Psyr_4042 at 4827.398 kb on + strand, within Psyr_4042 at 4827.398 kb on + strand, within Psyr_4042 at 4827.398 kb on + strand, within Psyr_4042 at 4827.399 kb on - strand, within Psyr_4042 at 4827.399 kb on - strand, within Psyr_4042 at 4827.399 kb on - strand, within Psyr_4042 at 4827.399 kb on - strand, within Psyr_4042 at 4827.399 kb on - strand, within Psyr_4042 at 4827.454 kb on + strand at 4827.454 kb on + strand at 4827.455 kb on - strand at 4827.458 kb on + strand at 4827.458 kb on + strand at 4827.459 kb on - strand at 4827.459 kb on - strand at 4827.459 kb on - strand at 4827.459 kb on - strand at 4827.483 kb on - strand at 4827.531 kb on + strand at 4827.531 kb on + strand at 4827.532 kb on - strand at 4827.540 kb on + strand at 4827.540 kb on + strand at 4827.563 kb on + strand at 4827.563 kb on + strand at 4827.564 kb on - strand at 4827.564 kb on - strand at 4827.564 kb on - strand at 4827.564 kb on - strand at 4827.564 kb on - strand at 4827.564 kb on - strand at 4827.564 kb on - strand at 4827.564 kb on - strand at 4827.567 kb on + strand at 4827.567 kb on + strand at 4827.567 kb on + strand at 4827.567 kb on + strand at 4827.567 kb on + strand at 4827.568 kb on - strand at 4827.568 kb on - strand at 4827.568 kb on - strand at 4827.638 kb on + strand at 4827.638 kb on + strand at 4827.638 kb on + strand at 4827.638 kb on + strand at 4827.638 kb on + strand at 4827.639 kb on - strand at 4827.639 kb on - strand at 4827.639 kb on - strand at 4827.639 kb on - strand at 4827.639 kb on - strand at 4827.685 kb on + strand at 4827.735 kb on + strand at 4827.736 kb on - strand at 4827.736 kb on - strand at 4827.736 kb on - strand at 4827.736 kb on - strand at 4827.857 kb on - strand at 4827.857 kb on - strand at 4827.976 kb on - strand at 4828.136 kb on + strand, within Psyr_4043 at 4828.136 kb on + strand, within Psyr_4043 at 4828.136 kb on + strand, within Psyr_4043 at 4828.136 kb on + strand, within Psyr_4043 at 4828.165 kb on + strand, within Psyr_4043 at 4828.175 kb on + strand, within Psyr_4043 at 4828.176 kb on - strand, within Psyr_4043 at 4828.334 kb on + strand at 4828.335 kb on - strand at 4828.335 kb on - strand at 4828.335 kb on - strand at 4828.335 kb on - strand at 4828.335 kb on - strand at 4828.675 kb on + strand, within Psyr_4044 at 4828.786 kb on + strand, within Psyr_4044 at 4828.786 kb on + strand, within Psyr_4044 at 4828.787 kb on - strand, within Psyr_4044 at 4828.787 kb on - strand, within Psyr_4044 at 4828.877 kb on - strand, within Psyr_4044 at 4829.155 kb on + strand, within Psyr_4044 at 4829.195 kb on - strand, within Psyr_4044 at 4829.359 kb on + strand, within Psyr_4044 at 4829.359 kb on + strand, within Psyr_4044 at 4829.359 kb on + strand, within Psyr_4044 at 4829.486 kb on + strand at 4829.677 kb on - strand, within Psyr_4045 at 4829.677 kb on - strand, within Psyr_4045 at 4829.678 kb on + strand, within Psyr_4045 at 4829.678 kb on + strand, within Psyr_4045 at 4829.678 kb on + strand, within Psyr_4045 at 4829.678 kb on + strand, within Psyr_4045 at 4829.678 kb on + strand, within Psyr_4045 at 4829.678 kb on + strand, within Psyr_4045 at 4829.678 kb on + strand, within Psyr_4045 at 4829.679 kb on - strand, within Psyr_4045 at 4829.679 kb on - strand, within Psyr_4045 at 4829.679 kb on - strand, within Psyr_4045 at 4829.754 kb on + strand, within Psyr_4045 at 4829.879 kb on + strand, within Psyr_4045 at 4830.000 kb on - strand, within Psyr_4045 at 4830.020 kb on - strand at 4830.060 kb on + strand at 4830.060 kb on + strand at 4830.060 kb on + strand at 4830.278 kb on - strand, within Psyr_4046 at 4830.278 kb on - strand, within Psyr_4046 at 4830.289 kb on + strand, within Psyr_4046 at 4830.289 kb on + strand, within Psyr_4046 at 4830.289 kb on + strand, within Psyr_4046 at 4830.290 kb on - strand, within Psyr_4046 at 4830.290 kb on - strand, within Psyr_4046 at 4830.290 kb on - strand, within Psyr_4046 at 4830.301 kb on + strand, within Psyr_4046 at 4830.301 kb on + strand, within Psyr_4046 at 4830.302 kb on - strand, within Psyr_4046 at 4830.325 kb on + strand, within Psyr_4046 at 4830.326 kb on - strand, within Psyr_4046 at 4830.326 kb on - strand, within Psyr_4046 at 4830.326 kb on - strand, within Psyr_4046 at 4830.326 kb on - strand, within Psyr_4046 at 4830.340 kb on + strand, within Psyr_4046 at 4830.340 kb on + strand, within Psyr_4046 at 4830.340 kb on + strand, within Psyr_4046 at 4830.341 kb on - strand, within Psyr_4046 at 4830.341 kb on - strand, within Psyr_4046 at 4830.356 kb on - strand, within Psyr_4046 at 4830.356 kb on - strand, within Psyr_4046
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Berberine 250 ug/ml remove 4,827,366 + Psyr_4042 0.73 +1.0 4,827,367 - Psyr_4042 0.73 +0.1 4,827,398 + Psyr_4042 0.80 +2.0 4,827,398 + Psyr_4042 0.80 -1.4 4,827,398 + Psyr_4042 0.80 -0.1 4,827,399 - Psyr_4042 0.80 -0.6 4,827,399 - Psyr_4042 0.80 -1.1 4,827,399 - Psyr_4042 0.80 -2.1 4,827,399 - Psyr_4042 0.80 -0.7 4,827,399 - Psyr_4042 0.80 -0.9 4,827,454 + +1.2 4,827,454 + -0.1 4,827,455 - -0.6 4,827,458 + +1.3 4,827,458 + +0.5 4,827,459 - +0.0 4,827,459 - +1.4 4,827,459 - +0.0 4,827,459 - -0.8 4,827,483 - -0.4 4,827,531 + -1.3 4,827,531 + -0.2 4,827,532 - +0.4 4,827,540 + +0.4 4,827,540 + +0.4 4,827,563 + +0.1 4,827,563 + +1.0 4,827,564 - +1.8 4,827,564 - +1.0 4,827,564 - -1.0 4,827,564 - +0.4 4,827,564 - +0.9 4,827,564 - +0.4 4,827,564 - +0.3 4,827,564 - -0.5 4,827,567 + -0.8 4,827,567 + -0.4 4,827,567 + -0.3 4,827,567 + -0.6 4,827,567 + -0.5 4,827,568 - -0.0 4,827,568 - +0.5 4,827,568 - -2.0 4,827,638 + -1.0 4,827,638 + -1.3 4,827,638 + -0.3 4,827,638 + -1.8 4,827,638 + +1.3 4,827,639 - +0.0 4,827,639 - +0.0 4,827,639 - -0.1 4,827,639 - -1.0 4,827,639 - -1.8 4,827,685 + +0.0 4,827,735 + -1.4 4,827,736 - +0.8 4,827,736 - -1.0 4,827,736 - +0.9 4,827,736 - +0.4 4,827,857 - +0.3 4,827,857 - +1.0 4,827,976 - -0.6 4,828,136 + Psyr_4043 0.35 -0.4 4,828,136 + Psyr_4043 0.35 +0.2 4,828,136 + Psyr_4043 0.35 -0.8 4,828,136 + Psyr_4043 0.35 +2.0 4,828,165 + Psyr_4043 0.47 +1.0 4,828,175 + Psyr_4043 0.51 +0.0 4,828,176 - Psyr_4043 0.52 +1.0 4,828,334 + +0.7 4,828,335 - -1.5 4,828,335 - +2.3 4,828,335 - +0.0 4,828,335 - -1.2 4,828,335 - +0.4 4,828,675 + Psyr_4044 0.30 -2.0 4,828,786 + Psyr_4044 0.39 +1.0 4,828,786 + Psyr_4044 0.39 -0.4 4,828,787 - Psyr_4044 0.40 -1.6 4,828,787 - Psyr_4044 0.40 +0.0 4,828,877 - Psyr_4044 0.47 -0.3 4,829,155 + Psyr_4044 0.71 +0.0 4,829,195 - Psyr_4044 0.75 +1.0 4,829,359 + Psyr_4044 0.89 -0.6 4,829,359 + Psyr_4044 0.89 -1.1 4,829,359 + Psyr_4044 0.89 -2.2 4,829,486 + +0.6 4,829,677 - Psyr_4045 0.32 +0.8 4,829,677 - Psyr_4045 0.32 +0.8 4,829,678 + Psyr_4045 0.33 -1.6 4,829,678 + Psyr_4045 0.33 +1.2 4,829,678 + Psyr_4045 0.33 -1.0 4,829,678 + Psyr_4045 0.33 +0.8 4,829,678 + Psyr_4045 0.33 -0.6 4,829,678 + Psyr_4045 0.33 +0.1 4,829,678 + Psyr_4045 0.33 -1.0 4,829,679 - Psyr_4045 0.33 -0.2 4,829,679 - Psyr_4045 0.33 +0.7 4,829,679 - Psyr_4045 0.33 -0.4 4,829,754 + Psyr_4045 0.46 +0.5 4,829,879 + Psyr_4045 0.67 -0.0 4,830,000 - Psyr_4045 0.88 +0.0 4,830,020 - +0.4 4,830,060 + +0.0 4,830,060 + -0.6 4,830,060 + +0.0 4,830,278 - Psyr_4046 0.36 +1.8 4,830,278 - Psyr_4046 0.36 +0.5 4,830,289 + Psyr_4046 0.39 -1.6 4,830,289 + Psyr_4046 0.39 -1.1 4,830,289 + Psyr_4046 0.39 +2.2 4,830,290 - Psyr_4046 0.40 -0.8 4,830,290 - Psyr_4046 0.40 +0.8 4,830,290 - Psyr_4046 0.40 +0.2 4,830,301 + Psyr_4046 0.43 -0.4 4,830,301 + Psyr_4046 0.43 +0.1 4,830,302 - Psyr_4046 0.43 +0.3 4,830,325 + Psyr_4046 0.50 +1.4 4,830,326 - Psyr_4046 0.51 -0.8 4,830,326 - Psyr_4046 0.51 +1.0 4,830,326 - Psyr_4046 0.51 -0.3 4,830,326 - Psyr_4046 0.51 -0.1 4,830,340 + Psyr_4046 0.55 +0.6 4,830,340 + Psyr_4046 0.55 +0.6 4,830,340 + Psyr_4046 0.55 +0.5 4,830,341 - Psyr_4046 0.55 +0.0 4,830,341 - Psyr_4046 0.55 -0.2 4,830,356 - Psyr_4046 0.60 -0.6 4,830,356 - Psyr_4046 0.60 -0.2
Or see this region's nucleotide sequence