Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3939

Experiment: KB with Berberine 250 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Berberine 250 ug/ml
4,683,953	-		Psyr_3938	0.47	-1.4
4,684,137	+		Psyr_3938	0.60	+0.7
4,684,137	+		Psyr_3938	0.60	-0.4
4,684,137	+		Psyr_3938	0.60	+0.1
4,684,138	-		Psyr_3938	0.60	+0.8
4,684,138	-		Psyr_3938	0.60	+0.7
4,684,138	-		Psyr_3938	0.60	+0.3
4,684,820	+				-0.2
4,684,820	+				+1.9
4,684,820	+				-0.3
4,684,821	-				-1.3
4,684,821	-				+0.8
4,684,893	+				-0.3
4,684,894	-				+0.9
4,684,894	-				-1.8
4,684,894	-				+2.7
4,684,898	+				-1.0
4,684,899	-				-0.2
4,684,935	-				-0.1
4,684,958	+				-0.2
4,684,958	+				+2.2
4,684,958	+				+0.5
4,685,024	+				+0.5
4,685,025	-				-0.5
4,685,360	+		Psyr_3939	0.38	-2.1
4,685,360	+		Psyr_3939	0.38	+1.5
4,685,360	+		Psyr_3939	0.38	-0.0
4,685,360	+		Psyr_3939	0.38	-1.2
4,685,360	+		Psyr_3939	0.38	+0.9
4,685,360	+		Psyr_3939	0.38	+0.1
4,685,360	+		Psyr_3939	0.38	-1.1
4,685,361	-		Psyr_3939	0.38	+1.1
4,685,361	-		Psyr_3939	0.38	-2.1
4,685,361	-		Psyr_3939	0.38	-0.6
4,685,361	-		Psyr_3939	0.38	-0.7
4,685,361	-		Psyr_3939	0.38	-0.1
4,685,396	+		Psyr_3939	0.42	-0.1
4,685,571	+		Psyr_3939	0.58	+0.1
4,685,870	-		Psyr_3939	0.85	-2.2
4,686,056	+				+2.0
4,686,056	+				+1.9
4,686,056	+				-1.0
4,686,056	+				-1.4
4,686,056	+				+1.2
4,686,056	+				+0.9
4,686,057	-				+1.3
4,686,057	-				+1.3
4,686,057	-				+0.7
4,686,057	-				-0.4
4,686,057	-				+1.6
4,686,058	+				+0.9
4,686,059	-				+0.3
4,686,059	-				-0.3
4,686,059	-				-0.2
4,686,059	-				+0.6
4,686,059	-				-0.2
4,686,059	-				+0.7
4,686,059	-				-1.1
4,686,059	-				+0.5
4,686,059	-				-0.3
4,686,061	-				+0.1
4,686,061	-				+0.9
4,686,061	-				+0.9
4,686,061	-				+0.4
4,686,061	-				+0.9
4,686,061	-				+0.5
4,686,061	-				+0.2
4,686,061	-				+0.5
4,686,061	-				-0.1
4,686,061	-				+0.6
4,686,061	-				+0.9
4,686,186	+				-0.4
4,686,186	+				+0.9
4,686,186	+				+0.4
4,686,232	-				-0.9
4,686,577	+				-0.7
4,686,651	-				+1.3
4,686,878	+				-0.7
4,686,891	+				-0.7
4,686,917	+				+0.3
4,686,917	+				-0.2
4,686,917	+				-0.8
4,686,917	+				-1.9
4,686,917	+				-1.7
4,686,918	-				-0.4
4,686,918	-				-1.1
4,686,918	-				+1.8
4,686,918	-				-0.2
4,686,918	-				-0.9