Experiment: KB with Berberine 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3930 and Psyr_3931 are separated by 726 nucleotides Psyr_3931 and Psyr_3932 overlap by 4 nucleotides
Psyr_3930: Psyr_3930 - quinoprotein glucose dehydrogenase, at 4,673,672 to 4,676,095
_3930
Psyr_3931: Psyr_3931 - conserved hypothetical protein, at 4,676,822 to 4,678,018
_3931
Psyr_3932: Psyr_3932 - Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K, at 4,678,015 to 4,679,022
_3932
Position (kb) 4676
4677
4678
4679 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4675.852 kb on + strand, within Psyr_3930 at 4675.853 kb on - strand at 4675.853 kb on - strand at 4675.853 kb on - strand at 4675.853 kb on - strand at 4675.892 kb on - strand at 4675.904 kb on + strand at 4675.916 kb on + strand at 4675.916 kb on + strand at 4675.917 kb on - strand at 4675.917 kb on - strand at 4675.917 kb on - strand at 4675.917 kb on - strand at 4675.917 kb on - strand at 4675.917 kb on - strand at 4675.988 kb on + strand at 4675.989 kb on - strand at 4675.989 kb on - strand at 4676.012 kb on + strand at 4676.012 kb on + strand at 4676.012 kb on + strand at 4676.013 kb on - strand at 4676.013 kb on - strand at 4676.013 kb on - strand at 4676.013 kb on - strand at 4676.013 kb on - strand at 4676.013 kb on - strand at 4676.066 kb on + strand at 4676.067 kb on - strand at 4676.067 kb on - strand at 4676.089 kb on + strand at 4676.093 kb on + strand at 4676.093 kb on + strand at 4676.093 kb on + strand at 4676.093 kb on + strand at 4676.093 kb on + strand at 4676.093 kb on + strand at 4676.093 kb on + strand at 4676.094 kb on - strand at 4676.094 kb on - strand at 4676.094 kb on - strand at 4676.094 kb on - strand at 4676.183 kb on + strand at 4676.344 kb on - strand at 4676.344 kb on - strand at 4676.403 kb on + strand at 4676.404 kb on - strand at 4676.780 kb on + strand at 4676.886 kb on + strand at 4676.886 kb on + strand at 4676.886 kb on + strand at 4676.887 kb on - strand at 4676.887 kb on - strand at 4676.943 kb on + strand, within Psyr_3931 at 4676.944 kb on - strand, within Psyr_3931 at 4677.030 kb on + strand, within Psyr_3931 at 4677.036 kb on + strand, within Psyr_3931 at 4677.090 kb on + strand, within Psyr_3931 at 4677.090 kb on + strand, within Psyr_3931 at 4677.090 kb on + strand, within Psyr_3931 at 4677.090 kb on + strand, within Psyr_3931 at 4677.090 kb on + strand, within Psyr_3931 at 4677.090 kb on + strand, within Psyr_3931 at 4677.090 kb on + strand, within Psyr_3931 at 4677.091 kb on - strand, within Psyr_3931 at 4677.091 kb on - strand, within Psyr_3931 at 4677.091 kb on - strand, within Psyr_3931 at 4677.091 kb on - strand, within Psyr_3931 at 4677.091 kb on - strand, within Psyr_3931 at 4677.091 kb on - strand, within Psyr_3931 at 4677.091 kb on - strand, within Psyr_3931 at 4677.091 kb on - strand, within Psyr_3931 at 4677.091 kb on - strand, within Psyr_3931 at 4677.093 kb on + strand, within Psyr_3931 at 4677.147 kb on + strand, within Psyr_3931 at 4677.153 kb on + strand, within Psyr_3931 at 4677.154 kb on - strand, within Psyr_3931 at 4677.154 kb on - strand, within Psyr_3931 at 4677.534 kb on - strand, within Psyr_3931 at 4677.858 kb on + strand, within Psyr_3931 at 4677.859 kb on - strand, within Psyr_3931 at 4677.867 kb on + strand, within Psyr_3931 at 4677.868 kb on - strand, within Psyr_3931 at 4678.264 kb on + strand, within Psyr_3932 at 4678.265 kb on - strand, within Psyr_3932 at 4678.265 kb on - strand, within Psyr_3932 at 4678.464 kb on + strand, within Psyr_3932
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Berberine 250 ug/ml remove 4,675,852 + Psyr_3930 0.90 +0.3 4,675,853 - +0.4 4,675,853 - +1.6 4,675,853 - +0.4 4,675,853 - +0.9 4,675,892 - +0.3 4,675,904 + -0.8 4,675,916 + +0.0 4,675,916 + +0.9 4,675,917 - +0.5 4,675,917 - -0.7 4,675,917 - -0.1 4,675,917 - -0.1 4,675,917 - +0.3 4,675,917 - +0.2 4,675,988 + -0.1 4,675,989 - -1.0 4,675,989 - +0.3 4,676,012 + -1.4 4,676,012 + +0.4 4,676,012 + -0.1 4,676,013 - -0.2 4,676,013 - +0.5 4,676,013 - -1.1 4,676,013 - -2.4 4,676,013 - +0.2 4,676,013 - -0.4 4,676,066 + -0.3 4,676,067 - -0.5 4,676,067 - -0.4 4,676,089 + +1.5 4,676,093 + +1.3 4,676,093 + -1.3 4,676,093 + +0.0 4,676,093 + -1.4 4,676,093 + +0.3 4,676,093 + +0.4 4,676,093 + -0.7 4,676,094 - -1.2 4,676,094 - -0.3 4,676,094 - -0.7 4,676,094 - +1.0 4,676,183 + -1.5 4,676,344 - +1.3 4,676,344 - +0.4 4,676,403 + -0.4 4,676,404 - -1.6 4,676,780 + -2.7 4,676,886 + +0.0 4,676,886 + -0.2 4,676,886 + +0.7 4,676,887 - -0.2 4,676,887 - +0.2 4,676,943 + Psyr_3931 0.10 +0.1 4,676,944 - Psyr_3931 0.10 -0.2 4,677,030 + Psyr_3931 0.17 -0.5 4,677,036 + Psyr_3931 0.18 -1.7 4,677,090 + Psyr_3931 0.22 +1.5 4,677,090 + Psyr_3931 0.22 -0.7 4,677,090 + Psyr_3931 0.22 -0.4 4,677,090 + Psyr_3931 0.22 +0.2 4,677,090 + Psyr_3931 0.22 -0.2 4,677,090 + Psyr_3931 0.22 -0.8 4,677,090 + Psyr_3931 0.22 -1.0 4,677,091 - Psyr_3931 0.22 -0.4 4,677,091 - Psyr_3931 0.22 +0.3 4,677,091 - Psyr_3931 0.22 -0.0 4,677,091 - Psyr_3931 0.22 -0.2 4,677,091 - Psyr_3931 0.22 +1.3 4,677,091 - Psyr_3931 0.22 -0.7 4,677,091 - Psyr_3931 0.22 -0.2 4,677,091 - Psyr_3931 0.22 -0.8 4,677,091 - Psyr_3931 0.22 +1.6 4,677,093 + Psyr_3931 0.23 +0.2 4,677,147 + Psyr_3931 0.27 +0.9 4,677,153 + Psyr_3931 0.28 -0.0 4,677,154 - Psyr_3931 0.28 -0.6 4,677,154 - Psyr_3931 0.28 -0.9 4,677,534 - Psyr_3931 0.59 -0.2 4,677,858 + Psyr_3931 0.87 -0.9 4,677,859 - Psyr_3931 0.87 +1.2 4,677,867 + Psyr_3931 0.87 +0.5 4,677,868 - Psyr_3931 0.87 -0.9 4,678,264 + Psyr_3932 0.25 +2.5 4,678,265 - Psyr_3932 0.25 -0.6 4,678,265 - Psyr_3932 0.25 +0.4 4,678,464 + Psyr_3932 0.45 -1.3
Or see this region's nucleotide sequence