Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3714

Experiment: KB with Berberine 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3713 and Psyr_3714 are separated by 0 nucleotidesPsyr_3714 and Psyr_3715 overlap by 43 nucleotides Psyr_3713: Psyr_3713 - 4'-phosphopantetheinyl transferase, at 4,399,936 to 4,400,670 _3713 Psyr_3714: Psyr_3714 - Ferric iron reductase, at 4,400,671 to 4,401,417 _3714 Psyr_3715: Psyr_3715 - ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal, at 4,401,375 to 4,402,985 _3715 Position (kb) 4400 4401 4402Strain fitness (log2 ratio) -2 -1 0 1at 4399.778 kb on - strandat 4399.891 kb on + strandat 4399.891 kb on + strandat 4399.891 kb on + strandat 4399.895 kb on + strandat 4399.896 kb on - strandat 4399.896 kb on - strandat 4399.896 kb on - strandat 4399.902 kb on - strandat 4399.955 kb on + strandat 4400.780 kb on + strand, within Psyr_3714at 4400.780 kb on + strand, within Psyr_3714at 4400.780 kb on + strand, within Psyr_3714at 4400.780 kb on + strand, within Psyr_3714at 4400.781 kb on - strand, within Psyr_3714at 4400.781 kb on - strand, within Psyr_3714at 4400.781 kb on - strand, within Psyr_3714at 4400.781 kb on - strand, within Psyr_3714at 4400.781 kb on - strand, within Psyr_3714at 4400.906 kb on + strand, within Psyr_3714at 4400.907 kb on - strand, within Psyr_3714at 4400.967 kb on + strand, within Psyr_3714at 4400.967 kb on + strand, within Psyr_3714at 4400.967 kb on + strand, within Psyr_3714at 4400.967 kb on + strand, within Psyr_3714at 4400.967 kb on + strand, within Psyr_3714at 4400.967 kb on + strand, within Psyr_3714at 4400.967 kb on + strand, within Psyr_3714at 4400.968 kb on - strand, within Psyr_3714at 4400.968 kb on - strand, within Psyr_3714at 4400.968 kb on - strand, within Psyr_3714at 4400.968 kb on - strand, within Psyr_3714at 4401.030 kb on + strand, within Psyr_3714at 4401.182 kb on + strand, within Psyr_3714at 4401.257 kb on - strand, within Psyr_3714at 4401.257 kb on - strand, within Psyr_3714at 4401.645 kb on - strand, within Psyr_3715at 4401.710 kb on - strand, within Psyr_3715at 4401.887 kb on - strand, within Psyr_3715at 4401.949 kb on + strand, within Psyr_3715at 4401.949 kb on + strand, within Psyr_3715at 4401.950 kb on - strand, within Psyr_3715at 4401.950 kb on - strand, within Psyr_3715at 4401.950 kb on - strand, within Psyr_3715at 4401.950 kb on - strand, within Psyr_3715at 4402.234 kb on + strand, within Psyr_3715at 4402.234 kb on + strand, within Psyr_3715at 4402.234 kb on + strand, within Psyr_3715at 4402.234 kb on + strand, within Psyr_3715at 4402.234 kb on + strand, within Psyr_3715at 4402.234 kb on + strand, within Psyr_3715at 4402.234 kb on + strand, within Psyr_3715at 4402.234 kb on + strand, within Psyr_3715at 4402.234 kb on + strand, within Psyr_3715at 4402.234 kb on + strand, within Psyr_3715at 4402.235 kb on - strand, within Psyr_3715at 4402.235 kb on - strand, within Psyr_3715at 4402.235 kb on - strand, within Psyr_3715at 4402.235 kb on - strand, within Psyr_3715at 4402.298 kb on - strand, within Psyr_3715at 4402.312 kb on + strand, within Psyr_3715

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Berberine 250 ug/ml
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4,399,778 - -0.6
4,399,891 + +0.2
4,399,891 + +0.4
4,399,891 + +0.9
4,399,895 + +0.3
4,399,896 - -1.3
4,399,896 - +0.0
4,399,896 - -0.7
4,399,902 - -1.3
4,399,955 + +0.1
4,400,780 + Psyr_3714 0.15 -0.3
4,400,780 + Psyr_3714 0.15 +0.4
4,400,780 + Psyr_3714 0.15 -0.1
4,400,780 + Psyr_3714 0.15 +0.9
4,400,781 - Psyr_3714 0.15 +0.2
4,400,781 - Psyr_3714 0.15 +0.3
4,400,781 - Psyr_3714 0.15 -1.4
4,400,781 - Psyr_3714 0.15 -1.5
4,400,781 - Psyr_3714 0.15 -1.0
4,400,906 + Psyr_3714 0.31 -1.5
4,400,907 - Psyr_3714 0.32 +0.9
4,400,967 + Psyr_3714 0.40 -0.9
4,400,967 + Psyr_3714 0.40 -0.9
4,400,967 + Psyr_3714 0.40 -0.9
4,400,967 + Psyr_3714 0.40 -0.9
4,400,967 + Psyr_3714 0.40 -2.3
4,400,967 + Psyr_3714 0.40 -1.4
4,400,967 + Psyr_3714 0.40 -0.7
4,400,968 - Psyr_3714 0.40 +1.0
4,400,968 - Psyr_3714 0.40 +0.8
4,400,968 - Psyr_3714 0.40 -0.6
4,400,968 - Psyr_3714 0.40 +0.5
4,401,030 + Psyr_3714 0.48 -0.7
4,401,182 + Psyr_3714 0.68 +0.6
4,401,257 - Psyr_3714 0.78 -0.1
4,401,257 - Psyr_3714 0.78 -1.5
4,401,645 - Psyr_3715 0.17 -1.2
4,401,710 - Psyr_3715 0.21 +0.2
4,401,887 - Psyr_3715 0.32 -0.3
4,401,949 + Psyr_3715 0.36 +0.1
4,401,949 + Psyr_3715 0.36 +0.8
4,401,950 - Psyr_3715 0.36 +0.3
4,401,950 - Psyr_3715 0.36 -0.7
4,401,950 - Psyr_3715 0.36 -0.1
4,401,950 - Psyr_3715 0.36 +0.9
4,402,234 + Psyr_3715 0.53 -0.1
4,402,234 + Psyr_3715 0.53 +1.3
4,402,234 + Psyr_3715 0.53 -1.1
4,402,234 + Psyr_3715 0.53 -0.4
4,402,234 + Psyr_3715 0.53 +0.2
4,402,234 + Psyr_3715 0.53 +0.3
4,402,234 + Psyr_3715 0.53 +0.2
4,402,234 + Psyr_3715 0.53 -0.9
4,402,234 + Psyr_3715 0.53 +0.7
4,402,234 + Psyr_3715 0.53 -0.4
4,402,235 - Psyr_3715 0.53 -0.8
4,402,235 - Psyr_3715 0.53 +0.1
4,402,235 - Psyr_3715 0.53 -0.1
4,402,235 - Psyr_3715 0.53 +0.3
4,402,298 - Psyr_3715 0.57 +0.7
4,402,312 + Psyr_3715 0.58 +1.5

Or see this region's nucleotide sequence