Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3671

Experiment: KB with Berberine 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3670 and Psyr_3671 are separated by 177 nucleotidesPsyr_3671 and Psyr_3672 are separated by 98 nucleotidesPsyr_3672 and Psyr_3673 are separated by 1 nucleotides Psyr_3670: Psyr_3670 - Glutathione peroxidase, at 4,357,067 to 4,357,621 _3670 Psyr_3671: Psyr_3671 - Major facilitator superfamily, at 4,357,799 to 4,359,007 _3671 Psyr_3672: Psyr_3672 - cobalamin-5'-phosphate synthase, at 4,359,106 to 4,359,837 _3672 Psyr_3673: Psyr_3673 - Phosphoglycerate/bisphosphoglycerate mutase, at 4,359,839 to 4,360,411 _3673 Position (kb) 4357 4358 4359 4360Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4356.833 kb on - strandat 4356.882 kb on + strandat 4356.882 kb on + strandat 4356.882 kb on + strandat 4356.882 kb on + strandat 4356.883 kb on - strandat 4356.904 kb on - strandat 4356.927 kb on + strandat 4356.928 kb on - strandat 4356.928 kb on - strandat 4356.936 kb on - strandat 4356.987 kb on + strandat 4356.987 kb on + strandat 4356.987 kb on + strandat 4356.987 kb on + strandat 4356.987 kb on + strandat 4356.988 kb on - strandat 4357.176 kb on + strand, within Psyr_3670at 4357.176 kb on + strand, within Psyr_3670at 4357.176 kb on + strand, within Psyr_3670at 4357.176 kb on + strand, within Psyr_3670at 4357.176 kb on + strandat 4357.177 kb on - strand, within Psyr_3670at 4357.177 kb on - strand, within Psyr_3670at 4357.177 kb on - strand, within Psyr_3670at 4357.182 kb on + strandat 4357.183 kb on - strand, within Psyr_3670at 4357.183 kb on - strand, within Psyr_3670at 4357.220 kb on + strand, within Psyr_3670at 4357.290 kb on + strand, within Psyr_3670at 4357.290 kb on + strand, within Psyr_3670at 4357.290 kb on + strand, within Psyr_3670at 4357.291 kb on - strand, within Psyr_3670at 4357.291 kb on - strand, within Psyr_3670at 4357.291 kb on - strand, within Psyr_3670at 4357.291 kb on - strand, within Psyr_3670at 4357.299 kb on + strand, within Psyr_3670at 4357.299 kb on + strand, within Psyr_3670at 4357.299 kb on + strand, within Psyr_3670at 4357.299 kb on + strand, within Psyr_3670at 4357.300 kb on - strand, within Psyr_3670at 4357.450 kb on + strand, within Psyr_3670at 4357.450 kb on + strand, within Psyr_3670at 4357.450 kb on + strand, within Psyr_3670at 4357.451 kb on - strand, within Psyr_3670at 4357.911 kb on + strandat 4357.911 kb on + strandat 4357.929 kb on + strand, within Psyr_3671at 4357.929 kb on + strand, within Psyr_3671at 4357.929 kb on + strand, within Psyr_3671at 4357.929 kb on + strand, within Psyr_3671at 4357.929 kb on + strand, within Psyr_3671at 4357.929 kb on + strand, within Psyr_3671at 4357.929 kb on + strand, within Psyr_3671at 4357.930 kb on - strand, within Psyr_3671at 4357.930 kb on - strand, within Psyr_3671at 4357.930 kb on - strand, within Psyr_3671at 4357.930 kb on - strand, within Psyr_3671at 4357.930 kb on - strand, within Psyr_3671at 4357.930 kb on - strand, within Psyr_3671at 4357.931 kb on + strand, within Psyr_3671at 4357.931 kb on + strand, within Psyr_3671at 4357.931 kb on + strand, within Psyr_3671at 4357.931 kb on + strand, within Psyr_3671at 4357.931 kb on + strand, within Psyr_3671at 4357.931 kb on + strand, within Psyr_3671at 4357.931 kb on + strand, within Psyr_3671at 4357.932 kb on - strand, within Psyr_3671at 4357.932 kb on - strand, within Psyr_3671at 4357.932 kb on - strand, within Psyr_3671at 4357.932 kb on - strand, within Psyr_3671at 4357.932 kb on - strand, within Psyr_3671at 4357.967 kb on + strand, within Psyr_3671at 4358.097 kb on + strand, within Psyr_3671at 4358.098 kb on - strand, within Psyr_3671at 4358.136 kb on - strandat 4358.136 kb on - strand, within Psyr_3671at 4358.141 kb on + strand, within Psyr_3671at 4358.141 kb on + strand, within Psyr_3671at 4358.141 kb on + strand, within Psyr_3671at 4358.142 kb on - strand, within Psyr_3671at 4358.142 kb on - strand, within Psyr_3671at 4358.142 kb on - strand, within Psyr_3671at 4358.142 kb on - strand, within Psyr_3671at 4358.145 kb on - strand, within Psyr_3671at 4358.160 kb on + strand, within Psyr_3671at 4358.160 kb on + strand, within Psyr_3671at 4358.217 kb on + strand, within Psyr_3671at 4358.217 kb on + strand, within Psyr_3671at 4358.218 kb on - strand, within Psyr_3671at 4358.261 kb on - strand, within Psyr_3671at 4358.261 kb on - strand, within Psyr_3671at 4358.298 kb on + strand, within Psyr_3671at 4358.298 kb on + strand, within Psyr_3671at 4358.433 kb on - strand, within Psyr_3671at 4358.542 kb on + strand, within Psyr_3671at 4358.543 kb on - strand, within Psyr_3671at 4358.602 kb on + strand, within Psyr_3671at 4358.754 kb on + strand, within Psyr_3671at 4358.755 kb on - strand, within Psyr_3671at 4358.755 kb on - strand, within Psyr_3671at 4358.755 kb on - strand, within Psyr_3671at 4359.032 kb on + strandat 4359.032 kb on + strandat 4359.032 kb on + strandat 4359.032 kb on + strandat 4359.032 kb on + strandat 4359.032 kb on + strandat 4359.032 kb on + strandat 4359.033 kb on - strandat 4359.033 kb on - strandat 4359.033 kb on - strandat 4359.033 kb on - strandat 4359.169 kb on - strandat 4359.368 kb on + strand, within Psyr_3672at 4359.368 kb on + strand, within Psyr_3672at 4359.368 kb on + strand, within Psyr_3672at 4359.368 kb on + strand, within Psyr_3672at 4359.368 kb on + strand, within Psyr_3672at 4359.369 kb on - strand, within Psyr_3672at 4359.647 kb on - strand, within Psyr_3672at 4359.737 kb on + strand, within Psyr_3672at 4360.002 kb on + strand, within Psyr_3673at 4360.002 kb on + strand, within Psyr_3673

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Berberine 250 ug/ml
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4,356,833 - +1.9
4,356,882 + -1.1
4,356,882 + +0.9
4,356,882 + +0.3
4,356,882 + +0.3
4,356,883 - -1.0
4,356,904 - +0.0
4,356,927 + +0.4
4,356,928 - +1.9
4,356,928 - -1.1
4,356,936 - -0.3
4,356,987 + +0.3
4,356,987 + +1.9
4,356,987 + -0.3
4,356,987 + -0.6
4,356,987 + -2.5
4,356,988 - -0.0
4,357,176 + Psyr_3670 0.20 -1.4
4,357,176 + Psyr_3670 0.20 +0.9
4,357,176 + Psyr_3670 0.20 -0.1
4,357,176 + Psyr_3670 0.20 +1.2
4,357,176 + -0.1
4,357,177 - Psyr_3670 0.20 -0.1
4,357,177 - Psyr_3670 0.20 -0.7
4,357,177 - Psyr_3670 0.20 -0.4
4,357,182 + -0.7
4,357,183 - Psyr_3670 0.21 -0.1
4,357,183 - Psyr_3670 0.21 -0.5
4,357,220 + Psyr_3670 0.28 -0.9
4,357,290 + Psyr_3670 0.40 +0.5
4,357,290 + Psyr_3670 0.40 +0.3
4,357,290 + Psyr_3670 0.40 -0.7
4,357,291 - Psyr_3670 0.40 -1.2
4,357,291 - Psyr_3670 0.40 +0.1
4,357,291 - Psyr_3670 0.40 -0.8
4,357,291 - Psyr_3670 0.40 +0.1
4,357,299 + Psyr_3670 0.42 +0.9
4,357,299 + Psyr_3670 0.42 -0.6
4,357,299 + Psyr_3670 0.42 -0.3
4,357,299 + Psyr_3670 0.42 +1.1
4,357,300 - Psyr_3670 0.42 +1.6
4,357,450 + Psyr_3670 0.69 +1.2
4,357,450 + Psyr_3670 0.69 -1.3
4,357,450 + Psyr_3670 0.69 +0.1
4,357,451 - Psyr_3670 0.69 -0.7
4,357,911 + -1.8
4,357,911 + +1.2
4,357,929 + Psyr_3671 0.11 +0.1
4,357,929 + Psyr_3671 0.11 -2.1
4,357,929 + Psyr_3671 0.11 -2.0
4,357,929 + Psyr_3671 0.11 +0.0
4,357,929 + Psyr_3671 0.11 +1.0
4,357,929 + Psyr_3671 0.11 -1.0
4,357,929 + Psyr_3671 0.11 -0.1
4,357,930 - Psyr_3671 0.11 -1.3
4,357,930 - Psyr_3671 0.11 +0.7
4,357,930 - Psyr_3671 0.11 +0.9
4,357,930 - Psyr_3671 0.11 -0.4
4,357,930 - Psyr_3671 0.11 +0.5
4,357,930 - Psyr_3671 0.11 -0.7
4,357,931 + Psyr_3671 0.11 +0.9
4,357,931 + Psyr_3671 0.11 +0.3
4,357,931 + Psyr_3671 0.11 -2.6
4,357,931 + Psyr_3671 0.11 -1.2
4,357,931 + Psyr_3671 0.11 -0.0
4,357,931 + Psyr_3671 0.11 +0.0
4,357,931 + Psyr_3671 0.11 -0.7
4,357,932 - Psyr_3671 0.11 -0.3
4,357,932 - Psyr_3671 0.11 +0.2
4,357,932 - Psyr_3671 0.11 +0.6
4,357,932 - Psyr_3671 0.11 -0.5
4,357,932 - Psyr_3671 0.11 -0.6
4,357,967 + Psyr_3671 0.14 -0.0
4,358,097 + Psyr_3671 0.25 -0.5
4,358,098 - Psyr_3671 0.25 +0.1
4,358,136 - +0.9
4,358,136 - Psyr_3671 0.28 -0.5
4,358,141 + Psyr_3671 0.28 -0.1
4,358,141 + Psyr_3671 0.28 -2.7
4,358,141 + Psyr_3671 0.28 -0.1
4,358,142 - Psyr_3671 0.28 +0.9
4,358,142 - Psyr_3671 0.28 +0.4
4,358,142 - Psyr_3671 0.28 -0.8
4,358,142 - Psyr_3671 0.28 -0.1
4,358,145 - Psyr_3671 0.29 -0.9
4,358,160 + Psyr_3671 0.30 -0.1
4,358,160 + Psyr_3671 0.30 -2.8
4,358,217 + Psyr_3671 0.35 -1.1
4,358,217 + Psyr_3671 0.35 -0.8
4,358,218 - Psyr_3671 0.35 -1.5
4,358,261 - Psyr_3671 0.38 -1.5
4,358,261 - Psyr_3671 0.38 +0.3
4,358,298 + Psyr_3671 0.41 -1.1
4,358,298 + Psyr_3671 0.41 -0.4
4,358,433 - Psyr_3671 0.52 -0.2
4,358,542 + Psyr_3671 0.61 +1.5
4,358,543 - Psyr_3671 0.62 -1.1
4,358,602 + Psyr_3671 0.66 +0.6
4,358,754 + Psyr_3671 0.79 +0.7
4,358,755 - Psyr_3671 0.79 +0.1
4,358,755 - Psyr_3671 0.79 +0.3
4,358,755 - Psyr_3671 0.79 -0.3
4,359,032 + -0.4
4,359,032 + -2.6
4,359,032 + +0.5
4,359,032 + -2.3
4,359,032 + +0.3
4,359,032 + -0.8
4,359,032 + -0.0
4,359,033 - -0.6
4,359,033 - -0.1
4,359,033 - -0.1
4,359,033 - +2.2
4,359,169 - -1.1
4,359,368 + Psyr_3672 0.36 -1.1
4,359,368 + Psyr_3672 0.36 -2.6
4,359,368 + Psyr_3672 0.36 +0.9
4,359,368 + Psyr_3672 0.36 +0.0
4,359,368 + Psyr_3672 0.36 -0.6
4,359,369 - Psyr_3672 0.36 +0.9
4,359,647 - Psyr_3672 0.74 -1.3
4,359,737 + Psyr_3672 0.86 +1.3
4,360,002 + Psyr_3673 0.28 -0.1
4,360,002 + Psyr_3673 0.28 -1.5

Or see this region's nucleotide sequence