Experiment: KB with Berberine 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3653 and Psyr_3654 are separated by 27 nucleotides Psyr_3654 and Psyr_3655 are separated by 31 nucleotides
Psyr_3653: Psyr_3653 - GGDEF domain protein, at 4,338,567 to 4,339,493
_3653
Psyr_3654: Psyr_3654 - conserved hypothetical protein, at 4,339,521 to 4,340,303
_3654
Psyr_3655: Psyr_3655 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s), at 4,340,335 to 4,342,797
_3655
Position (kb) 4339
4340
4341 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4338.546 kb on + strand at 4338.546 kb on + strand at 4338.546 kb on + strand at 4338.546 kb on + strand at 4338.547 kb on - strand at 4338.547 kb on - strand at 4338.547 kb on - strand at 4338.547 kb on - strand at 4338.632 kb on + strand at 4338.684 kb on + strand, within Psyr_3653 at 4338.754 kb on + strand, within Psyr_3653 at 4338.754 kb on + strand, within Psyr_3653 at 4338.754 kb on + strand, within Psyr_3653 at 4338.755 kb on - strand, within Psyr_3653 at 4338.755 kb on - strand, within Psyr_3653 at 4338.755 kb on - strand, within Psyr_3653 at 4338.755 kb on - strand, within Psyr_3653 at 4338.755 kb on - strand, within Psyr_3653 at 4338.755 kb on - strand, within Psyr_3653 at 4338.755 kb on - strand, within Psyr_3653 at 4338.786 kb on + strand, within Psyr_3653 at 4338.786 kb on + strand, within Psyr_3653 at 4338.786 kb on + strand, within Psyr_3653 at 4338.787 kb on - strand, within Psyr_3653 at 4338.960 kb on + strand, within Psyr_3653 at 4339.152 kb on + strand, within Psyr_3653 at 4339.152 kb on + strand, within Psyr_3653 at 4339.152 kb on + strand, within Psyr_3653 at 4339.446 kb on + strand at 4339.446 kb on + strand at 4339.446 kb on + strand at 4339.446 kb on + strand at 4339.446 kb on + strand at 4339.447 kb on - strand at 4339.594 kb on + strand at 4339.594 kb on + strand at 4339.594 kb on + strand at 4339.594 kb on + strand at 4339.594 kb on + strand at 4339.594 kb on + strand at 4339.594 kb on + strand at 4339.594 kb on + strand at 4339.594 kb on + strand at 4339.594 kb on + strand at 4339.594 kb on + strand at 4339.595 kb on - strand at 4339.595 kb on - strand at 4339.595 kb on - strand at 4339.595 kb on - strand at 4339.595 kb on - strand at 4339.595 kb on - strand at 4339.600 kb on + strand, within Psyr_3654 at 4339.600 kb on + strand, within Psyr_3654 at 4339.600 kb on + strand, within Psyr_3654 at 4339.600 kb on + strand, within Psyr_3654 at 4339.600 kb on + strand, within Psyr_3654 at 4339.600 kb on + strand at 4339.601 kb on - strand, within Psyr_3654 at 4339.601 kb on - strand, within Psyr_3654 at 4339.601 kb on - strand, within Psyr_3654 at 4339.601 kb on - strand, within Psyr_3654 at 4339.601 kb on - strand, within Psyr_3654 at 4339.601 kb on - strand, within Psyr_3654 at 4339.601 kb on - strand, within Psyr_3654 at 4339.601 kb on - strand, within Psyr_3654 at 4339.601 kb on - strand, within Psyr_3654 at 4339.601 kb on - strand, within Psyr_3654 at 4339.607 kb on - strand, within Psyr_3654 at 4339.674 kb on - strand, within Psyr_3654 at 4339.674 kb on - strand, within Psyr_3654 at 4339.674 kb on - strand, within Psyr_3654 at 4339.674 kb on - strand, within Psyr_3654 at 4339.837 kb on + strand, within Psyr_3654 at 4339.837 kb on + strand, within Psyr_3654 at 4339.837 kb on + strand, within Psyr_3654 at 4339.838 kb on - strand, within Psyr_3654 at 4339.838 kb on - strand, within Psyr_3654 at 4339.838 kb on - strand, within Psyr_3654 at 4339.838 kb on - strand, within Psyr_3654 at 4339.838 kb on - strand, within Psyr_3654 at 4339.838 kb on - strand, within Psyr_3654 at 4339.838 kb on - strand, within Psyr_3654 at 4339.838 kb on - strand, within Psyr_3654 at 4339.838 kb on - strand, within Psyr_3654 at 4339.838 kb on - strand, within Psyr_3654 at 4339.838 kb on - strand, within Psyr_3654 at 4339.838 kb on - strand, within Psyr_3654 at 4339.985 kb on - strand at 4340.092 kb on + strand, within Psyr_3654 at 4340.092 kb on + strand, within Psyr_3654 at 4340.092 kb on + strand, within Psyr_3654 at 4340.092 kb on + strand, within Psyr_3654 at 4340.092 kb on + strand, within Psyr_3654 at 4340.092 kb on + strand, within Psyr_3654 at 4340.092 kb on + strand, within Psyr_3654 at 4340.092 kb on + strand at 4340.093 kb on - strand, within Psyr_3654 at 4340.093 kb on - strand, within Psyr_3654 at 4340.093 kb on - strand, within Psyr_3654 at 4340.093 kb on - strand, within Psyr_3654 at 4340.093 kb on - strand, within Psyr_3654 at 4340.093 kb on - strand, within Psyr_3654 at 4340.093 kb on - strand, within Psyr_3654 at 4340.093 kb on - strand, within Psyr_3654 at 4340.093 kb on - strand, within Psyr_3654 at 4340.093 kb on - strand, within Psyr_3654 at 4340.135 kb on - strand, within Psyr_3654 at 4340.183 kb on - strand, within Psyr_3654 at 4340.317 kb on + strand at 4340.341 kb on + strand at 4340.341 kb on + strand at 4340.380 kb on + strand at 4340.391 kb on + strand at 4340.392 kb on - strand at 4340.393 kb on + strand at 4340.393 kb on + strand at 4340.394 kb on - strand at 4340.394 kb on - strand at 4340.394 kb on - strand at 4340.436 kb on - strand at 4340.498 kb on + strand at 4340.499 kb on - strand at 4340.499 kb on - strand at 4340.509 kb on - strand at 4340.509 kb on - strand at 4340.509 kb on - strand at 4340.535 kb on + strand at 4340.538 kb on + strand at 4340.538 kb on + strand at 4340.538 kb on + strand at 4340.538 kb on + strand at 4340.539 kb on - strand at 4340.539 kb on - strand at 4340.539 kb on - strand at 4340.557 kb on - strand at 4340.557 kb on - strand at 4340.639 kb on + strand, within Psyr_3655 at 4340.640 kb on - strand, within Psyr_3655 at 4340.640 kb on - strand, within Psyr_3655 at 4340.656 kb on - strand, within Psyr_3655 at 4340.785 kb on + strand, within Psyr_3655 at 4340.786 kb on - strand, within Psyr_3655 at 4340.786 kb on - strand, within Psyr_3655 at 4340.829 kb on + strand, within Psyr_3655 at 4340.829 kb on + strand, within Psyr_3655 at 4340.829 kb on + strand, within Psyr_3655 at 4340.829 kb on + strand, within Psyr_3655 at 4340.829 kb on + strand, within Psyr_3655 at 4340.830 kb on - strand, within Psyr_3655 at 4340.830 kb on - strand, within Psyr_3655 at 4340.861 kb on - strand, within Psyr_3655 at 4340.863 kb on - strand, within Psyr_3655 at 4340.869 kb on + strand, within Psyr_3655 at 4340.869 kb on + strand, within Psyr_3655 at 4340.869 kb on + strand, within Psyr_3655 at 4340.869 kb on + strand, within Psyr_3655 at 4340.869 kb on + strand, within Psyr_3655 at 4340.869 kb on + strand, within Psyr_3655 at 4340.869 kb on + strand, within Psyr_3655 at 4340.869 kb on + strand, within Psyr_3655 at 4340.869 kb on + strand, within Psyr_3655 at 4340.869 kb on + strand, within Psyr_3655 at 4340.870 kb on - strand, within Psyr_3655 at 4340.870 kb on - strand, within Psyr_3655 at 4340.870 kb on - strand, within Psyr_3655 at 4340.870 kb on - strand, within Psyr_3655 at 4340.870 kb on - strand, within Psyr_3655 at 4340.935 kb on + strand, within Psyr_3655 at 4340.936 kb on - strand, within Psyr_3655 at 4341.055 kb on + strand, within Psyr_3655 at 4341.098 kb on + strand, within Psyr_3655 at 4341.099 kb on - strand, within Psyr_3655 at 4341.142 kb on + strand, within Psyr_3655 at 4341.194 kb on + strand, within Psyr_3655 at 4341.231 kb on + strand, within Psyr_3655 at 4341.231 kb on + strand, within Psyr_3655 at 4341.231 kb on + strand, within Psyr_3655 at 4341.231 kb on + strand, within Psyr_3655 at 4341.232 kb on - strand, within Psyr_3655 at 4341.232 kb on - strand, within Psyr_3655 at 4341.232 kb on - strand, within Psyr_3655 at 4341.232 kb on - strand, within Psyr_3655 at 4341.233 kb on + strand, within Psyr_3655 at 4341.233 kb on + strand, within Psyr_3655 at 4341.233 kb on + strand, within Psyr_3655 at 4341.233 kb on + strand, within Psyr_3655 at 4341.233 kb on + strand, within Psyr_3655 at 4341.233 kb on + strand, within Psyr_3655 at 4341.233 kb on + strand, within Psyr_3655 at 4341.233 kb on + strand, within Psyr_3655 at 4341.233 kb on + strand, within Psyr_3655 at 4341.233 kb on + strand, within Psyr_3655 at 4341.233 kb on + strand, within Psyr_3655 at 4341.233 kb on + strand, within Psyr_3655 at 4341.234 kb on - strand, within Psyr_3655 at 4341.234 kb on - strand, within Psyr_3655 at 4341.234 kb on - strand, within Psyr_3655 at 4341.234 kb on - strand, within Psyr_3655 at 4341.234 kb on - strand, within Psyr_3655 at 4341.234 kb on - strand, within Psyr_3655 at 4341.282 kb on + strand, within Psyr_3655 at 4341.282 kb on + strand, within Psyr_3655 at 4341.283 kb on - strand, within Psyr_3655 at 4341.295 kb on + strand, within Psyr_3655 at 4341.295 kb on + strand, within Psyr_3655
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Berberine 250 ug/ml remove 4,338,546 + +0.3 4,338,546 + +0.3 4,338,546 + +0.6 4,338,546 + -1.3 4,338,547 - +0.2 4,338,547 - -0.5 4,338,547 - -1.0 4,338,547 - -0.7 4,338,632 + -1.3 4,338,684 + Psyr_3653 0.13 -1.9 4,338,754 + Psyr_3653 0.20 -0.6 4,338,754 + Psyr_3653 0.20 +0.9 4,338,754 + Psyr_3653 0.20 +0.2 4,338,755 - Psyr_3653 0.20 +1.1 4,338,755 - Psyr_3653 0.20 +0.9 4,338,755 - Psyr_3653 0.20 +0.0 4,338,755 - Psyr_3653 0.20 -0.3 4,338,755 - Psyr_3653 0.20 -0.7 4,338,755 - Psyr_3653 0.20 +0.2 4,338,755 - Psyr_3653 0.20 -1.0 4,338,786 + Psyr_3653 0.24 +0.5 4,338,786 + Psyr_3653 0.24 -0.6 4,338,786 + Psyr_3653 0.24 -1.3 4,338,787 - Psyr_3653 0.24 +1.9 4,338,960 + Psyr_3653 0.42 -0.1 4,339,152 + Psyr_3653 0.63 +0.1 4,339,152 + Psyr_3653 0.63 +0.6 4,339,152 + Psyr_3653 0.63 +0.1 4,339,446 + +1.2 4,339,446 + +0.1 4,339,446 + +0.1 4,339,446 + -0.7 4,339,446 + -0.7 4,339,447 - +0.4 4,339,594 + -0.5 4,339,594 + +0.9 4,339,594 + -0.1 4,339,594 + +0.3 4,339,594 + -1.4 4,339,594 + -0.4 4,339,594 + -0.4 4,339,594 + -1.7 4,339,594 + -0.1 4,339,594 + -1.6 4,339,594 + -0.5 4,339,595 - -0.7 4,339,595 - -1.0 4,339,595 - -0.1 4,339,595 - +0.5 4,339,595 - -0.7 4,339,595 - -0.2 4,339,600 + Psyr_3654 0.10 +2.4 4,339,600 + Psyr_3654 0.10 +0.0 4,339,600 + Psyr_3654 0.10 -1.3 4,339,600 + Psyr_3654 0.10 +0.6 4,339,600 + Psyr_3654 0.10 +0.5 4,339,600 + -0.1 4,339,601 - Psyr_3654 0.10 -0.4 4,339,601 - Psyr_3654 0.10 -1.1 4,339,601 - Psyr_3654 0.10 +0.1 4,339,601 - Psyr_3654 0.10 +0.1 4,339,601 - Psyr_3654 0.10 -0.6 4,339,601 - Psyr_3654 0.10 -0.7 4,339,601 - Psyr_3654 0.10 -1.5 4,339,601 - Psyr_3654 0.10 +0.7 4,339,601 - Psyr_3654 0.10 +0.5 4,339,601 - Psyr_3654 0.10 -1.5 4,339,607 - Psyr_3654 0.11 -3.0 4,339,674 - Psyr_3654 0.20 -0.5 4,339,674 - Psyr_3654 0.20 +0.3 4,339,674 - Psyr_3654 0.20 -0.3 4,339,674 - Psyr_3654 0.20 +0.3 4,339,837 + Psyr_3654 0.40 +0.7 4,339,837 + Psyr_3654 0.40 +1.4 4,339,837 + Psyr_3654 0.40 -0.4 4,339,838 - Psyr_3654 0.40 +2.7 4,339,838 - Psyr_3654 0.40 +0.5 4,339,838 - Psyr_3654 0.40 -1.5 4,339,838 - Psyr_3654 0.40 -0.9 4,339,838 - Psyr_3654 0.40 -0.7 4,339,838 - Psyr_3654 0.40 +0.9 4,339,838 - Psyr_3654 0.40 -0.4 4,339,838 - Psyr_3654 0.40 -2.5 4,339,838 - Psyr_3654 0.40 +0.3 4,339,838 - Psyr_3654 0.40 +1.6 4,339,838 - Psyr_3654 0.40 -0.3 4,339,838 - Psyr_3654 0.40 -0.3 4,339,985 - -0.7 4,340,092 + Psyr_3654 0.73 +1.5 4,340,092 + Psyr_3654 0.73 -0.4 4,340,092 + Psyr_3654 0.73 -1.9 4,340,092 + Psyr_3654 0.73 -0.4 4,340,092 + Psyr_3654 0.73 +0.9 4,340,092 + Psyr_3654 0.73 -0.3 4,340,092 + Psyr_3654 0.73 -1.9 4,340,092 + +0.9 4,340,093 - Psyr_3654 0.73 -0.2 4,340,093 - Psyr_3654 0.73 +0.0 4,340,093 - Psyr_3654 0.73 +0.5 4,340,093 - Psyr_3654 0.73 +0.9 4,340,093 - Psyr_3654 0.73 -1.5 4,340,093 - Psyr_3654 0.73 +0.1 4,340,093 - Psyr_3654 0.73 -0.1 4,340,093 - Psyr_3654 0.73 +0.0 4,340,093 - Psyr_3654 0.73 -2.5 4,340,093 - Psyr_3654 0.73 +0.2 4,340,135 - Psyr_3654 0.78 -1.8 4,340,183 - Psyr_3654 0.85 -0.5 4,340,317 + -1.7 4,340,341 + -2.5 4,340,341 + +0.3 4,340,380 + -0.7 4,340,391 + -2.3 4,340,392 - -0.4 4,340,393 + +0.3 4,340,393 + -0.1 4,340,394 - +0.4 4,340,394 - +1.3 4,340,394 - +0.3 4,340,436 - -2.7 4,340,498 + -0.7 4,340,499 - -0.0 4,340,499 - +1.3 4,340,509 - +0.1 4,340,509 - +0.3 4,340,509 - -1.1 4,340,535 + +0.4 4,340,538 + +1.6 4,340,538 + -1.8 4,340,538 + +1.2 4,340,538 + +0.6 4,340,539 - -0.7 4,340,539 - -1.1 4,340,539 - -1.7 4,340,557 - -0.2 4,340,557 - +0.6 4,340,639 + Psyr_3655 0.12 -0.3 4,340,640 - Psyr_3655 0.12 -0.7 4,340,640 - Psyr_3655 0.12 -0.7 4,340,656 - Psyr_3655 0.13 +0.5 4,340,785 + Psyr_3655 0.18 -0.3 4,340,786 - Psyr_3655 0.18 +0.9 4,340,786 - Psyr_3655 0.18 +0.3 4,340,829 + Psyr_3655 0.20 -0.3 4,340,829 + Psyr_3655 0.20 -0.6 4,340,829 + Psyr_3655 0.20 -1.5 4,340,829 + Psyr_3655 0.20 -0.4 4,340,829 + Psyr_3655 0.20 -1.5 4,340,830 - Psyr_3655 0.20 -1.3 4,340,830 - Psyr_3655 0.20 -2.9 4,340,861 - Psyr_3655 0.21 -1.6 4,340,863 - Psyr_3655 0.21 -1.1 4,340,869 + Psyr_3655 0.22 +0.7 4,340,869 + Psyr_3655 0.22 -1.1 4,340,869 + Psyr_3655 0.22 -0.1 4,340,869 + Psyr_3655 0.22 +0.9 4,340,869 + Psyr_3655 0.22 -1.0 4,340,869 + Psyr_3655 0.22 -0.0 4,340,869 + Psyr_3655 0.22 +1.9 4,340,869 + Psyr_3655 0.22 -1.3 4,340,869 + Psyr_3655 0.22 -0.4 4,340,869 + Psyr_3655 0.22 -1.1 4,340,870 - Psyr_3655 0.22 -0.5 4,340,870 - Psyr_3655 0.22 -0.1 4,340,870 - Psyr_3655 0.22 -0.2 4,340,870 - Psyr_3655 0.22 -0.7 4,340,870 - Psyr_3655 0.22 -0.8 4,340,935 + Psyr_3655 0.24 +0.3 4,340,936 - Psyr_3655 0.24 -0.7 4,341,055 + Psyr_3655 0.29 -0.4 4,341,098 + Psyr_3655 0.31 +0.4 4,341,099 - Psyr_3655 0.31 -0.6 4,341,142 + Psyr_3655 0.33 +0.1 4,341,194 + Psyr_3655 0.35 -0.1 4,341,231 + Psyr_3655 0.36 -1.1 4,341,231 + Psyr_3655 0.36 +0.7 4,341,231 + Psyr_3655 0.36 -0.7 4,341,231 + Psyr_3655 0.36 +1.5 4,341,232 - Psyr_3655 0.36 +0.3 4,341,232 - Psyr_3655 0.36 +1.5 4,341,232 - Psyr_3655 0.36 -0.1 4,341,232 - Psyr_3655 0.36 +0.5 4,341,233 + Psyr_3655 0.36 -1.3 4,341,233 + Psyr_3655 0.36 +0.1 4,341,233 + Psyr_3655 0.36 -0.7 4,341,233 + Psyr_3655 0.36 -1.2 4,341,233 + Psyr_3655 0.36 +0.9 4,341,233 + Psyr_3655 0.36 -0.6 4,341,233 + Psyr_3655 0.36 -1.1 4,341,233 + Psyr_3655 0.36 -1.4 4,341,233 + Psyr_3655 0.36 -0.4 4,341,233 + Psyr_3655 0.36 +0.9 4,341,233 + Psyr_3655 0.36 +1.1 4,341,233 + Psyr_3655 0.36 -1.0 4,341,234 - Psyr_3655 0.37 -0.4 4,341,234 - Psyr_3655 0.37 +0.2 4,341,234 - Psyr_3655 0.37 -0.9 4,341,234 - Psyr_3655 0.37 -0.4 4,341,234 - Psyr_3655 0.37 +1.3 4,341,234 - Psyr_3655 0.37 -0.7 4,341,282 + Psyr_3655 0.38 -0.3 4,341,282 + Psyr_3655 0.38 -0.9 4,341,283 - Psyr_3655 0.38 -1.3 4,341,295 + Psyr_3655 0.39 -0.9 4,341,295 + Psyr_3655 0.39 -0.6
Or see this region's nucleotide sequence