Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3640

Experiment: KB with Berberine 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3639 and Psyr_3640 are separated by 415 nucleotidesPsyr_3640 and Psyr_3641 are separated by 24 nucleotidesPsyr_3641 and Psyr_3642 are separated by 320 nucleotides Psyr_3639: Psyr_3639 - Beta-lactamase-like:RNA-metabolising metallo-beta-lactamase, at 4,321,250 to 4,322,692 _3639 Psyr_3640: Psyr_3640 - conserved hypothetical protein, at 4,323,108 to 4,323,350 _3640 Psyr_3641: Psyr_3641 - Integration host factor, beta subunit, at 4,323,375 to 4,323,671 _3641 Psyr_3642: Psyr_3642 - SSU ribosomal protein S1P, at 4,323,992 to 4,325,683 _3642 Position (kb) 4323 4324Strain fitness (log2 ratio) -2 -1 0 1 2at 4322.140 kb on + strand, within Psyr_3639at 4322.140 kb on + strand, within Psyr_3639at 4322.140 kb on + strand, within Psyr_3639at 4322.140 kb on + strand, within Psyr_3639at 4322.216 kb on + strand, within Psyr_3639at 4322.216 kb on + strand, within Psyr_3639at 4322.216 kb on + strand, within Psyr_3639at 4322.216 kb on + strand, within Psyr_3639at 4322.216 kb on + strand, within Psyr_3639at 4322.216 kb on + strand, within Psyr_3639at 4322.216 kb on + strand, within Psyr_3639at 4322.216 kb on + strand, within Psyr_3639at 4322.216 kb on + strand, within Psyr_3639at 4322.216 kb on + strand, within Psyr_3639at 4322.216 kb on + strand, within Psyr_3639at 4322.216 kb on + strand, within Psyr_3639at 4322.216 kb on + strand, within Psyr_3639at 4322.216 kb on + strand, within Psyr_3639at 4322.216 kb on + strand, within Psyr_3639at 4322.216 kb on + strand, within Psyr_3639at 4322.216 kb on + strand, within Psyr_3639at 4322.216 kb on + strand, within Psyr_3639at 4322.216 kb on + strand, within Psyr_3639at 4322.216 kb on + strand, within Psyr_3639at 4322.216 kb on + strand, within Psyr_3639at 4322.216 kb on + strand, within Psyr_3639at 4322.216 kb on + strand, within Psyr_3639at 4322.216 kb on + strand, within Psyr_3639at 4322.216 kb on + strand, within Psyr_3639at 4322.216 kb on + strand, within Psyr_3639at 4322.216 kb on + strand, within Psyr_3639at 4322.216 kb on + strand, within Psyr_3639at 4322.216 kb on + strand, within Psyr_3639at 4322.216 kb on + strand, within Psyr_3639at 4322.217 kb on - strand, within Psyr_3639at 4322.217 kb on - strand, within Psyr_3639at 4322.217 kb on - strand, within Psyr_3639at 4322.217 kb on - strand, within Psyr_3639at 4322.217 kb on - strand, within Psyr_3639at 4322.217 kb on - strand, within Psyr_3639at 4322.217 kb on - strand, within Psyr_3639at 4322.217 kb on - strand, within Psyr_3639at 4322.217 kb on - strand, within Psyr_3639at 4322.217 kb on - strand, within Psyr_3639at 4322.217 kb on - strand, within Psyr_3639at 4322.217 kb on - strand, within Psyr_3639at 4322.217 kb on - strand, within Psyr_3639at 4322.217 kb on - strand, within Psyr_3639at 4322.217 kb on - strand, within Psyr_3639at 4322.218 kb on + strand, within Psyr_3639at 4322.218 kb on + strand, within Psyr_3639at 4322.219 kb on - strand, within Psyr_3639at 4322.219 kb on - strand, within Psyr_3639at 4322.219 kb on - strand, within Psyr_3639at 4322.220 kb on + strand, within Psyr_3639at 4322.220 kb on + strand, within Psyr_3639at 4322.220 kb on + strand, within Psyr_3639at 4322.220 kb on + strand, within Psyr_3639at 4322.221 kb on - strand, within Psyr_3639at 4322.221 kb on - strand, within Psyr_3639at 4322.234 kb on + strand, within Psyr_3639at 4322.234 kb on + strand, within Psyr_3639at 4322.235 kb on - strand, within Psyr_3639at 4322.235 kb on - strand, within Psyr_3639at 4322.235 kb on - strand, within Psyr_3639at 4322.235 kb on - strand, within Psyr_3639at 4322.235 kb on - strand, within Psyr_3639at 4322.235 kb on - strand, within Psyr_3639at 4322.235 kb on - strand, within Psyr_3639at 4322.235 kb on - strand, within Psyr_3639at 4322.235 kb on - strand, within Psyr_3639at 4322.235 kb on - strand, within Psyr_3639at 4322.501 kb on + strand, within Psyr_3639at 4322.501 kb on + strand, within Psyr_3639at 4322.501 kb on + strand, within Psyr_3639at 4322.501 kb on + strand, within Psyr_3639at 4322.501 kb on + strand, within Psyr_3639at 4322.501 kb on + strand, within Psyr_3639at 4322.501 kb on + strand, within Psyr_3639at 4322.501 kb on + strand, within Psyr_3639at 4322.501 kb on + strand, within Psyr_3639at 4322.501 kb on + strand, within Psyr_3639at 4322.501 kb on + strand, within Psyr_3639at 4322.501 kb on + strand, within Psyr_3639at 4322.501 kb on + strand, within Psyr_3639at 4322.501 kb on + strand, within Psyr_3639at 4322.501 kb on + strand, within Psyr_3639at 4322.501 kb on + strand, within Psyr_3639at 4322.501 kb on + strand, within Psyr_3639at 4322.501 kb on + strand, within Psyr_3639at 4322.502 kb on - strand, within Psyr_3639at 4322.502 kb on - strand, within Psyr_3639at 4322.502 kb on - strand, within Psyr_3639at 4322.502 kb on - strand, within Psyr_3639at 4322.502 kb on - strand, within Psyr_3639at 4322.502 kb on - strand, within Psyr_3639at 4322.502 kb on - strand, within Psyr_3639at 4322.502 kb on - strand, within Psyr_3639at 4322.502 kb on - strand, within Psyr_3639at 4322.502 kb on - strand, within Psyr_3639at 4322.502 kb on - strand, within Psyr_3639at 4322.502 kb on - strand, within Psyr_3639at 4322.653 kb on + strandat 4322.654 kb on - strandat 4322.726 kb on - strandat 4322.757 kb on + strandat 4322.757 kb on + strandat 4322.757 kb on + strandat 4322.758 kb on - strandat 4322.827 kb on + strandat 4322.843 kb on + strandat 4322.847 kb on + strandat 4322.847 kb on + strandat 4322.848 kb on - strandat 4322.848 kb on - strandat 4322.848 kb on - strandat 4322.848 kb on - strandat 4322.902 kb on - strandat 4322.917 kb on + strandat 4322.926 kb on + strandat 4322.927 kb on - strandat 4322.929 kb on - strandat 4322.953 kb on + strandat 4322.954 kb on - strandat 4322.954 kb on - strandat 4322.954 kb on - strandat 4323.279 kb on + strand, within Psyr_3640at 4323.279 kb on + strand, within Psyr_3640at 4323.279 kb on + strand, within Psyr_3640at 4323.280 kb on - strand, within Psyr_3640at 4323.280 kb on - strand, within Psyr_3640at 4323.280 kb on - strand, within Psyr_3640at 4323.344 kb on + strandat 4323.344 kb on + strandat 4323.344 kb on + strandat 4323.345 kb on - strandat 4323.345 kb on - strandat 4323.376 kb on + strandat 4323.698 kb on - strandat 4323.698 kb on - strandat 4323.751 kb on + strandat 4323.751 kb on + strandat 4323.751 kb on + strandat 4323.751 kb on + strandat 4323.751 kb on + strandat 4323.751 kb on + strandat 4323.759 kb on + strandat 4323.759 kb on + strandat 4323.759 kb on + strandat 4323.759 kb on + strandat 4323.760 kb on - strandat 4323.760 kb on - strandat 4323.760 kb on - strandat 4323.848 kb on + strandat 4323.848 kb on + strandat 4323.849 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Berberine 250 ug/ml
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4,322,140 + Psyr_3639 0.62 +0.2
4,322,140 + Psyr_3639 0.62 -0.3
4,322,140 + Psyr_3639 0.62 -0.4
4,322,140 + Psyr_3639 0.62 -0.4
4,322,216 + Psyr_3639 0.67 -0.4
4,322,216 + Psyr_3639 0.67 +0.5
4,322,216 + Psyr_3639 0.67 +1.4
4,322,216 + Psyr_3639 0.67 +0.5
4,322,216 + Psyr_3639 0.67 -0.2
4,322,216 + Psyr_3639 0.67 -0.1
4,322,216 + Psyr_3639 0.67 -0.1
4,322,216 + Psyr_3639 0.67 +0.6
4,322,216 + Psyr_3639 0.67 +1.9
4,322,216 + Psyr_3639 0.67 +0.7
4,322,216 + Psyr_3639 0.67 +0.7
4,322,216 + Psyr_3639 0.67 +0.4
4,322,216 + Psyr_3639 0.67 +0.6
4,322,216 + Psyr_3639 0.67 +0.3
4,322,216 + Psyr_3639 0.67 +0.4
4,322,216 + Psyr_3639 0.67 -2.1
4,322,216 + Psyr_3639 0.67 +1.1
4,322,216 + Psyr_3639 0.67 -0.5
4,322,216 + Psyr_3639 0.67 -1.4
4,322,216 + Psyr_3639 0.67 +0.0
4,322,216 + Psyr_3639 0.67 +0.2
4,322,216 + Psyr_3639 0.67 -1.0
4,322,216 + Psyr_3639 0.67 -0.5
4,322,216 + Psyr_3639 0.67 +2.1
4,322,216 + Psyr_3639 0.67 -1.0
4,322,216 + Psyr_3639 0.67 -0.1
4,322,216 + Psyr_3639 0.67 +0.0
4,322,216 + Psyr_3639 0.67 -0.3
4,322,216 + Psyr_3639 0.67 +0.6
4,322,216 + Psyr_3639 0.67 +0.5
4,322,217 - Psyr_3639 0.67 -0.1
4,322,217 - Psyr_3639 0.67 +0.5
4,322,217 - Psyr_3639 0.67 -1.9
4,322,217 - Psyr_3639 0.67 -1.0
4,322,217 - Psyr_3639 0.67 -1.2
4,322,217 - Psyr_3639 0.67 -0.3
4,322,217 - Psyr_3639 0.67 -0.5
4,322,217 - Psyr_3639 0.67 -0.7
4,322,217 - Psyr_3639 0.67 -0.0
4,322,217 - Psyr_3639 0.67 -0.6
4,322,217 - Psyr_3639 0.67 +1.9
4,322,217 - Psyr_3639 0.67 -0.3
4,322,217 - Psyr_3639 0.67 -0.8
4,322,217 - Psyr_3639 0.67 +0.1
4,322,217 - Psyr_3639 0.67 -1.0
4,322,218 + Psyr_3639 0.67 +0.5
4,322,218 + Psyr_3639 0.67 -0.6
4,322,219 - Psyr_3639 0.67 -0.1
4,322,219 - Psyr_3639 0.67 -1.3
4,322,219 - Psyr_3639 0.67 -0.6
4,322,220 + Psyr_3639 0.67 +0.5
4,322,220 + Psyr_3639 0.67 +0.1
4,322,220 + Psyr_3639 0.67 +0.4
4,322,220 + Psyr_3639 0.67 -0.1
4,322,221 - Psyr_3639 0.67 -0.1
4,322,221 - Psyr_3639 0.67 -1.2
4,322,234 + Psyr_3639 0.68 -0.7
4,322,234 + Psyr_3639 0.68 +0.5
4,322,235 - Psyr_3639 0.68 -1.2
4,322,235 - Psyr_3639 0.68 -0.7
4,322,235 - Psyr_3639 0.68 -0.6
4,322,235 - Psyr_3639 0.68 -0.5
4,322,235 - Psyr_3639 0.68 +0.3
4,322,235 - Psyr_3639 0.68 -0.7
4,322,235 - Psyr_3639 0.68 +0.2
4,322,235 - Psyr_3639 0.68 +0.4
4,322,235 - Psyr_3639 0.68 +0.1
4,322,235 - Psyr_3639 0.68 +0.4
4,322,501 + Psyr_3639 0.87 -0.2
4,322,501 + Psyr_3639 0.87 -1.6
4,322,501 + Psyr_3639 0.87 +1.1
4,322,501 + Psyr_3639 0.87 +0.9
4,322,501 + Psyr_3639 0.87 -0.6
4,322,501 + Psyr_3639 0.87 -1.5
4,322,501 + Psyr_3639 0.87 +0.3
4,322,501 + Psyr_3639 0.87 +1.0
4,322,501 + Psyr_3639 0.87 +1.9
4,322,501 + Psyr_3639 0.87 -0.8
4,322,501 + Psyr_3639 0.87 +1.4
4,322,501 + Psyr_3639 0.87 -0.4
4,322,501 + Psyr_3639 0.87 +0.0
4,322,501 + Psyr_3639 0.87 +1.1
4,322,501 + Psyr_3639 0.87 +0.9
4,322,501 + Psyr_3639 0.87 +0.9
4,322,501 + Psyr_3639 0.87 +0.4
4,322,501 + Psyr_3639 0.87 +0.4
4,322,502 - Psyr_3639 0.87 -0.0
4,322,502 - Psyr_3639 0.87 -1.1
4,322,502 - Psyr_3639 0.87 +0.9
4,322,502 - Psyr_3639 0.87 -1.6
4,322,502 - Psyr_3639 0.87 +1.0
4,322,502 - Psyr_3639 0.87 -0.3
4,322,502 - Psyr_3639 0.87 -2.3
4,322,502 - Psyr_3639 0.87 -0.4
4,322,502 - Psyr_3639 0.87 -1.3
4,322,502 - Psyr_3639 0.87 -2.3
4,322,502 - Psyr_3639 0.87 -1.4
4,322,502 - Psyr_3639 0.87 +0.9
4,322,653 + -0.4
4,322,654 - -0.1
4,322,726 - +0.3
4,322,757 + -2.5
4,322,757 + -0.1
4,322,757 + -1.4
4,322,758 - -0.8
4,322,827 + +1.0
4,322,843 + +0.9
4,322,847 + -0.1
4,322,847 + +0.2
4,322,848 - -1.1
4,322,848 - -0.6
4,322,848 - +1.0
4,322,848 - +0.2
4,322,902 - -1.5
4,322,917 + -0.6
4,322,926 + +0.4
4,322,927 - +0.3
4,322,929 - -1.5
4,322,953 + -1.7
4,322,954 - -0.1
4,322,954 - -0.1
4,322,954 - -0.0
4,323,279 + Psyr_3640 0.70 -1.7
4,323,279 + Psyr_3640 0.70 -1.7
4,323,279 + Psyr_3640 0.70 +1.7
4,323,280 - Psyr_3640 0.71 -1.9
4,323,280 - Psyr_3640 0.71 -0.1
4,323,280 - Psyr_3640 0.71 -1.6
4,323,344 + -0.1
4,323,344 + -0.7
4,323,344 + +1.0
4,323,345 - -0.1
4,323,345 - +0.2
4,323,376 + -1.5
4,323,698 - -0.6
4,323,698 - +0.5
4,323,751 + -2.1
4,323,751 + -0.1
4,323,751 + +0.3
4,323,751 + -0.1
4,323,751 + -0.1
4,323,751 + -1.7
4,323,759 + -1.1
4,323,759 + +0.0
4,323,759 + -2.1
4,323,759 + -0.1
4,323,760 - +0.9
4,323,760 - +0.3
4,323,760 - -0.1
4,323,848 + +1.1
4,323,848 + +0.1
4,323,849 - -0.3

Or see this region's nucleotide sequence