Experiment: KB with Berberine 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3569 and Psyr_3570 overlap by 4 nucleotides Psyr_3570 and Psyr_3571 are separated by 76 nucleotides Psyr_3571 and Psyr_3572 are separated by 531 nucleotides
Psyr_3569: Psyr_3569 - L-ornithine ABC transporter membrane protein / L-arginine ABC transporter membrane protein, at 4,250,963 to 4,251,661
_3569
Psyr_3570: Psyr_3570 - L-ornithine ABC transporter membrane protein / L-arginine ABC transporter membrane protein, at 4,251,658 to 4,252,347
_3570
Psyr_3571: Psyr_3571 - L-arginine-binding protein / L-ornithine-binding protein, at 4,252,424 to 4,253,200
_3571
Psyr_3572: Psyr_3572 - acetyl-coenzyme A synthetase, at 4,253,732 to 4,255,687
_3572
Position (kb) 4252
4253
4254 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4251.436 kb on - strand, within Psyr_3569 at 4251.436 kb on - strand, within Psyr_3569 at 4251.438 kb on + strand, within Psyr_3569 at 4251.438 kb on + strand, within Psyr_3569 at 4251.438 kb on + strand, within Psyr_3569 at 4251.439 kb on - strand, within Psyr_3569 at 4251.439 kb on - strand, within Psyr_3569 at 4251.439 kb on - strand, within Psyr_3569 at 4251.483 kb on + strand, within Psyr_3569 at 4251.483 kb on + strand, within Psyr_3569 at 4251.483 kb on + strand, within Psyr_3569 at 4251.483 kb on + strand, within Psyr_3569 at 4251.483 kb on + strand, within Psyr_3569 at 4251.484 kb on - strand, within Psyr_3569 at 4251.484 kb on - strand, within Psyr_3569 at 4251.484 kb on - strand, within Psyr_3569 at 4251.484 kb on - strand, within Psyr_3569 at 4251.484 kb on - strand, within Psyr_3569 at 4251.484 kb on - strand, within Psyr_3569 at 4251.489 kb on + strand, within Psyr_3569 at 4251.489 kb on + strand, within Psyr_3569 at 4251.489 kb on + strand, within Psyr_3569 at 4251.490 kb on - strand, within Psyr_3569 at 4251.648 kb on + strand at 4251.649 kb on - strand at 4251.661 kb on + strand at 4251.661 kb on + strand at 4251.661 kb on + strand at 4251.661 kb on + strand at 4251.661 kb on + strand at 4251.661 kb on + strand at 4251.661 kb on + strand at 4251.662 kb on - strand at 4251.743 kb on + strand, within Psyr_3570 at 4251.744 kb on - strand, within Psyr_3570 at 4251.744 kb on - strand, within Psyr_3570 at 4251.744 kb on - strand, within Psyr_3570 at 4251.744 kb on - strand, within Psyr_3570 at 4251.956 kb on + strand, within Psyr_3570 at 4251.957 kb on - strand, within Psyr_3570 at 4252.025 kb on + strand, within Psyr_3570 at 4252.025 kb on + strand, within Psyr_3570 at 4252.038 kb on + strand, within Psyr_3570 at 4252.039 kb on - strand, within Psyr_3570 at 4252.193 kb on + strand, within Psyr_3570 at 4252.194 kb on - strand, within Psyr_3570 at 4252.373 kb on - strand at 4252.425 kb on + strand at 4252.425 kb on + strand at 4252.426 kb on - strand at 4252.426 kb on - strand at 4252.452 kb on + strand at 4252.452 kb on + strand at 4252.453 kb on - strand at 4252.453 kb on - strand at 4252.473 kb on + strand at 4252.473 kb on + strand at 4252.473 kb on + strand at 4252.474 kb on - strand at 4252.474 kb on - strand at 4252.474 kb on - strand at 4252.474 kb on - strand at 4252.474 kb on - strand at 4252.573 kb on - strand, within Psyr_3571 at 4252.598 kb on + strand, within Psyr_3571 at 4252.599 kb on - strand, within Psyr_3571 at 4252.599 kb on - strand, within Psyr_3571 at 4252.702 kb on - strand, within Psyr_3571 at 4252.702 kb on - strand, within Psyr_3571 at 4252.723 kb on - strand, within Psyr_3571 at 4252.793 kb on + strand, within Psyr_3571 at 4252.878 kb on + strand, within Psyr_3571 at 4252.879 kb on - strand, within Psyr_3571 at 4252.879 kb on - strand, within Psyr_3571 at 4252.879 kb on - strand, within Psyr_3571 at 4252.879 kb on - strand, within Psyr_3571 at 4252.879 kb on - strand, within Psyr_3571 at 4252.882 kb on - strand, within Psyr_3571 at 4252.882 kb on - strand, within Psyr_3571 at 4252.882 kb on - strand, within Psyr_3571 at 4252.882 kb on - strand, within Psyr_3571 at 4252.882 kb on - strand, within Psyr_3571 at 4252.976 kb on - strand, within Psyr_3571 at 4253.387 kb on + strand at 4253.388 kb on - strand at 4253.388 kb on - strand at 4253.462 kb on + strand at 4253.462 kb on + strand at 4253.510 kb on + strand at 4253.545 kb on + strand at 4253.571 kb on + strand at 4253.644 kb on + strand at 4253.644 kb on + strand at 4253.645 kb on - strand at 4253.646 kb on + strand at 4253.646 kb on + strand at 4253.646 kb on + strand at 4253.646 kb on + strand at 4253.646 kb on + strand at 4253.646 kb on + strand at 4253.646 kb on + strand at 4253.646 kb on + strand at 4253.646 kb on + strand at 4253.646 kb on + strand at 4253.646 kb on + strand at 4253.646 kb on + strand at 4253.646 kb on + strand at 4253.646 kb on + strand at 4253.646 kb on + strand at 4253.646 kb on + strand at 4253.646 kb on + strand at 4253.647 kb on - strand at 4253.647 kb on - strand at 4253.647 kb on - strand at 4253.647 kb on - strand at 4253.647 kb on - strand at 4253.647 kb on - strand at 4253.647 kb on - strand at 4253.647 kb on - strand at 4253.647 kb on - strand at 4253.647 kb on - strand at 4253.647 kb on - strand at 4253.647 kb on - strand at 4253.647 kb on - strand at 4253.647 kb on - strand at 4253.647 kb on - strand at 4253.647 kb on - strand at 4253.647 kb on - strand at 4253.647 kb on - strand at 4253.647 kb on - strand at 4253.647 kb on - strand at 4253.647 kb on - strand at 4253.649 kb on - strand at 4253.820 kb on + strand at 4253.821 kb on - strand at 4254.003 kb on + strand, within Psyr_3572 at 4254.003 kb on + strand, within Psyr_3572 at 4254.003 kb on + strand, within Psyr_3572 at 4254.003 kb on + strand, within Psyr_3572 at 4254.003 kb on + strand, within Psyr_3572 at 4254.004 kb on - strand, within Psyr_3572 at 4254.004 kb on - strand, within Psyr_3572 at 4254.004 kb on - strand, within Psyr_3572 at 4254.009 kb on + strand, within Psyr_3572 at 4254.009 kb on + strand, within Psyr_3572 at 4254.009 kb on + strand, within Psyr_3572 at 4254.009 kb on + strand, within Psyr_3572 at 4254.009 kb on + strand, within Psyr_3572 at 4254.009 kb on + strand, within Psyr_3572 at 4254.009 kb on + strand, within Psyr_3572 at 4254.009 kb on + strand, within Psyr_3572 at 4254.009 kb on + strand, within Psyr_3572 at 4254.009 kb on + strand, within Psyr_3572 at 4254.010 kb on - strand, within Psyr_3572 at 4254.010 kb on - strand, within Psyr_3572 at 4254.010 kb on - strand, within Psyr_3572 at 4254.010 kb on - strand, within Psyr_3572 at 4254.010 kb on - strand, within Psyr_3572 at 4254.010 kb on - strand, within Psyr_3572 at 4254.010 kb on - strand, within Psyr_3572 at 4254.010 kb on - strand, within Psyr_3572 at 4254.163 kb on - strand, within Psyr_3572
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Berberine 250 ug/ml remove 4,251,436 - Psyr_3569 0.68 -0.8 4,251,436 - Psyr_3569 0.68 -2.0 4,251,438 + Psyr_3569 0.68 -1.2 4,251,438 + Psyr_3569 0.68 +0.2 4,251,438 + Psyr_3569 0.68 +0.8 4,251,439 - Psyr_3569 0.68 -1.3 4,251,439 - Psyr_3569 0.68 +1.2 4,251,439 - Psyr_3569 0.68 -1.5 4,251,483 + Psyr_3569 0.74 -0.1 4,251,483 + Psyr_3569 0.74 -1.0 4,251,483 + Psyr_3569 0.74 -0.2 4,251,483 + Psyr_3569 0.74 +0.2 4,251,483 + Psyr_3569 0.74 -1.8 4,251,484 - Psyr_3569 0.75 -0.6 4,251,484 - Psyr_3569 0.75 -1.0 4,251,484 - Psyr_3569 0.75 +1.2 4,251,484 - Psyr_3569 0.75 -1.0 4,251,484 - Psyr_3569 0.75 -0.4 4,251,484 - Psyr_3569 0.75 -0.2 4,251,489 + Psyr_3569 0.75 +0.8 4,251,489 + Psyr_3569 0.75 +0.0 4,251,489 + Psyr_3569 0.75 +1.2 4,251,490 - Psyr_3569 0.75 -0.2 4,251,648 + -0.1 4,251,649 - -1.0 4,251,661 + -0.2 4,251,661 + +1.2 4,251,661 + +0.4 4,251,661 + -1.5 4,251,661 + -0.8 4,251,661 + -1.8 4,251,661 + -0.0 4,251,662 - -0.3 4,251,743 + Psyr_3570 0.12 -0.2 4,251,744 - Psyr_3570 0.12 +0.8 4,251,744 - Psyr_3570 0.12 +0.2 4,251,744 - Psyr_3570 0.12 +0.5 4,251,744 - Psyr_3570 0.12 +0.4 4,251,956 + Psyr_3570 0.43 -0.8 4,251,957 - Psyr_3570 0.43 +0.4 4,252,025 + Psyr_3570 0.53 -1.2 4,252,025 + Psyr_3570 0.53 +0.5 4,252,038 + Psyr_3570 0.55 +1.1 4,252,039 - Psyr_3570 0.55 -0.3 4,252,193 + Psyr_3570 0.78 +0.5 4,252,194 - Psyr_3570 0.78 +0.1 4,252,373 - -0.4 4,252,425 + -0.9 4,252,425 + -0.8 4,252,426 - +0.4 4,252,426 - -0.1 4,252,452 + +0.5 4,252,452 + -0.5 4,252,453 - -1.9 4,252,453 - +0.4 4,252,473 + +1.2 4,252,473 + +2.4 4,252,473 + -0.7 4,252,474 - +0.5 4,252,474 - +0.1 4,252,474 - +0.4 4,252,474 - -0.8 4,252,474 - +1.2 4,252,573 - Psyr_3571 0.19 -2.5 4,252,598 + Psyr_3571 0.22 -0.5 4,252,599 - Psyr_3571 0.23 -1.8 4,252,599 - Psyr_3571 0.23 -0.2 4,252,702 - Psyr_3571 0.36 -0.5 4,252,702 - Psyr_3571 0.36 -1.4 4,252,723 - Psyr_3571 0.38 -0.8 4,252,793 + Psyr_3571 0.47 +0.8 4,252,878 + Psyr_3571 0.58 -1.1 4,252,879 - Psyr_3571 0.59 -1.1 4,252,879 - Psyr_3571 0.59 +0.5 4,252,879 - Psyr_3571 0.59 +0.0 4,252,879 - Psyr_3571 0.59 -0.9 4,252,879 - Psyr_3571 0.59 +0.5 4,252,882 - Psyr_3571 0.59 +0.2 4,252,882 - Psyr_3571 0.59 -0.2 4,252,882 - Psyr_3571 0.59 -0.6 4,252,882 - Psyr_3571 0.59 +0.8 4,252,882 - Psyr_3571 0.59 -1.8 4,252,976 - Psyr_3571 0.71 -0.8 4,253,387 + +0.6 4,253,388 - -0.0 4,253,388 - +0.0 4,253,462 + +1.8 4,253,462 + -0.0 4,253,510 + +0.1 4,253,545 + -0.6 4,253,571 + -0.2 4,253,644 + +0.1 4,253,644 + +0.8 4,253,645 - -0.8 4,253,646 + -0.2 4,253,646 + +0.7 4,253,646 + -0.0 4,253,646 + +0.0 4,253,646 + -0.2 4,253,646 + -0.2 4,253,646 + +0.3 4,253,646 + +0.5 4,253,646 + -0.3 4,253,646 + +0.3 4,253,646 + -0.5 4,253,646 + +0.5 4,253,646 + +2.1 4,253,646 + +0.2 4,253,646 + +0.2 4,253,646 + -0.9 4,253,646 + -1.5 4,253,647 - -0.4 4,253,647 - +0.5 4,253,647 - -0.5 4,253,647 - +0.7 4,253,647 - +0.2 4,253,647 - +1.8 4,253,647 - -3.2 4,253,647 - -0.3 4,253,647 - +1.1 4,253,647 - +1.2 4,253,647 - -1.5 4,253,647 - +0.4 4,253,647 - +0.3 4,253,647 - -1.2 4,253,647 - -0.5 4,253,647 - +1.1 4,253,647 - -0.4 4,253,647 - -0.0 4,253,647 - -1.4 4,253,647 - -0.2 4,253,647 - +0.8 4,253,649 - +0.2 4,253,820 + -0.1 4,253,821 - -1.2 4,254,003 + Psyr_3572 0.14 -0.2 4,254,003 + Psyr_3572 0.14 -0.6 4,254,003 + Psyr_3572 0.14 +0.2 4,254,003 + Psyr_3572 0.14 +0.7 4,254,003 + Psyr_3572 0.14 +0.4 4,254,004 - Psyr_3572 0.14 -0.5 4,254,004 - Psyr_3572 0.14 -1.5 4,254,004 - Psyr_3572 0.14 +1.3 4,254,009 + Psyr_3572 0.14 -2.2 4,254,009 + Psyr_3572 0.14 -0.8 4,254,009 + Psyr_3572 0.14 -1.2 4,254,009 + Psyr_3572 0.14 +0.6 4,254,009 + Psyr_3572 0.14 +0.0 4,254,009 + Psyr_3572 0.14 +0.4 4,254,009 + Psyr_3572 0.14 +0.5 4,254,009 + Psyr_3572 0.14 +0.6 4,254,009 + Psyr_3572 0.14 -0.2 4,254,009 + Psyr_3572 0.14 -0.3 4,254,010 - Psyr_3572 0.14 -0.8 4,254,010 - Psyr_3572 0.14 -0.4 4,254,010 - Psyr_3572 0.14 +0.5 4,254,010 - Psyr_3572 0.14 +0.8 4,254,010 - Psyr_3572 0.14 +0.8 4,254,010 - Psyr_3572 0.14 +0.2 4,254,010 - Psyr_3572 0.14 -1.2 4,254,010 - Psyr_3572 0.14 +1.2 4,254,163 - Psyr_3572 0.22 -0.2
Or see this region's nucleotide sequence