Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3355

Experiment: KB with Berberine 250 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Berberine 250 ug/ml
4,011,545	+		Psyr_3353	0.78	+1.7
4,011,545	+		Psyr_3353	0.78	-0.5
4,011,546	-		Psyr_3353	0.79	-0.4
4,011,546	-		Psyr_3353	0.79	+0.3
4,011,774	-				-1.3
4,011,779	+				+0.5
4,011,779	+				+0.5
4,011,779	+				-0.5
4,011,780	-				+0.2
4,011,780	-				-0.4
4,011,780	-				-0.1
4,011,780	-				+1.3
4,011,797	+				+0.7
4,011,797	+				-1.9
4,011,951	+				-1.3
4,012,125	+		Psyr_3354	0.33	+0.2
4,012,155	+		Psyr_3354	0.38	+0.1
4,012,155	+		Psyr_3354	0.38	-0.1
4,012,155	+		Psyr_3354	0.38	-0.4
4,012,155	+		Psyr_3354	0.38	+1.9
4,012,156	-		Psyr_3354	0.39	-0.3
4,012,156	-		Psyr_3354	0.39	-0.8
4,012,205	-		Psyr_3354	0.47	-0.5
4,012,205	-		Psyr_3354	0.47	+0.5
4,012,205	-		Psyr_3354	0.47	-0.9
4,012,368	+		Psyr_3354	0.76	+0.5
4,012,368	+		Psyr_3354	0.76	+0.5
4,012,368	+		Psyr_3354	0.76	+0.5
4,012,369	-		Psyr_3354	0.76	-0.9
4,012,369	-		Psyr_3354	0.76	+1.7
4,012,543	+				-0.3
4,012,813	+		Psyr_3355	0.15	-0.3
4,012,814	-		Psyr_3355	0.15	-0.9
4,012,814	-		Psyr_3355	0.15	+1.1
4,012,814	-		Psyr_3355	0.15	+0.1
4,012,814	-		Psyr_3355	0.15	-0.7
4,012,951	+		Psyr_3355	0.22	+1.1
4,012,952	-		Psyr_3355	0.22	-0.0
4,012,966	+		Psyr_3355	0.23	-0.6
4,012,966	+		Psyr_3355	0.23	-0.0
4,013,002	+		Psyr_3355	0.25	+2.3
4,013,003	-		Psyr_3355	0.25	+0.3
4,013,003	-		Psyr_3355	0.25	+1.7
4,013,042	-		Psyr_3355	0.27	+2.1
4,013,167	+		Psyr_3355	0.33	+0.7
4,013,167	+		Psyr_3355	0.33	+0.3
4,013,168	-		Psyr_3355	0.33	-0.6
4,013,517	+		Psyr_3355	0.51	-0.1
4,013,725	+		Psyr_3355	0.62	+0.7
4,013,725	+		Psyr_3355	0.62	-0.1
4,013,737	+		Psyr_3355	0.63	-0.3
4,013,737	+		Psyr_3355	0.63	+0.4
4,013,779	+		Psyr_3355	0.65	-0.5
4,013,779	+		Psyr_3355	0.65	+0.1
4,013,784	+		Psyr_3355	0.65	+1.2
4,013,785	-		Psyr_3355	0.65	+0.8
4,013,785	-		Psyr_3355	0.65	-0.4
4,013,921	+		Psyr_3355	0.72	-0.5
4,013,921	+		Psyr_3355	0.72	+0.3
4,013,921	+		Psyr_3355	0.72	-1.6
4,013,921	+		Psyr_3355	0.72	+0.7
4,013,922	-		Psyr_3355	0.72	-0.1
4,013,922	-		Psyr_3355	0.72	+1.5
4,014,163	-		Psyr_3355	0.85	+0.4
4,014,163	-		Psyr_3355	0.85	-1.5
4,014,218	-		Psyr_3355	0.88	-0.4
4,014,364	+				-0.5
4,014,364	+				-0.0
4,014,365	-				+1.7
4,014,365	-				-0.4
4,014,365	-				-0.1
4,014,365	-				-0.3
4,014,370	+				-0.6
4,014,371	-				+0.4
4,014,397	+				-0.5
4,014,397	+				-1.5
4,014,397	+				-0.0
4,014,398	-				+0.2
4,014,398	-				+0.7
4,014,594	+				+3.4
4,014,595	-				+0.7
4,014,595	-				-2.1
4,014,595	-				-0.1
4,014,676	-				-0.0
4,014,723	+				+1.6
4,014,724	-				-0.9
4,014,995	-				-1.3
4,015,090	+				+0.1
4,015,090	+				+1.0
4,015,091	-				+0.3
4,015,092	+				-0.7
4,015,376	+		Psyr_3357	0.24	+0.3
4,015,376	+		Psyr_3357	0.24	-0.5
4,015,376	+		Psyr_3357	0.24	+0.7
4,015,377	-		Psyr_3357	0.24	-1.5
4,015,450	-		Psyr_3357	0.33	+0.1
4,015,450	-		Psyr_3357	0.33	-0.2