Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3229

Experiment: KB with Berberine 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3228 and Psyr_3229 are separated by 104 nucleotidesPsyr_3229 and Psyr_3230 are separated by 73 nucleotides Psyr_3228: Psyr_3228 - Glycosyl transferase, group 1, at 3,866,332 to 3,867,537 _3228 Psyr_3229: Psyr_3229 - Glycosyl transferase, group 1, at 3,867,642 to 3,868,757 _3229 Psyr_3230: Psyr_3230 - Glycosyl transferase, group 1, at 3,868,831 to 3,870,060 _3230 Position (kb) 3867 3868 3869Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3866.746 kb on + strand, within Psyr_3228at 3866.746 kb on + strand, within Psyr_3228at 3866.912 kb on - strand, within Psyr_3228at 3866.912 kb on - strand, within Psyr_3228at 3866.932 kb on + strand, within Psyr_3228at 3866.933 kb on - strand, within Psyr_3228at 3866.933 kb on - strand, within Psyr_3228at 3867.019 kb on + strand, within Psyr_3228at 3867.536 kb on - strandat 3867.536 kb on - strandat 3867.689 kb on - strandat 3867.746 kb on - strandat 3867.761 kb on + strand, within Psyr_3229at 3867.856 kb on - strand, within Psyr_3229at 3867.916 kb on - strand, within Psyr_3229at 3867.916 kb on - strand, within Psyr_3229at 3867.951 kb on + strand, within Psyr_3229at 3867.951 kb on + strand, within Psyr_3229at 3867.951 kb on + strand, within Psyr_3229at 3867.951 kb on + strand, within Psyr_3229at 3867.951 kb on + strandat 3867.951 kb on + strand, within Psyr_3229at 3867.951 kb on + strand, within Psyr_3229at 3867.951 kb on + strand, within Psyr_3229at 3867.951 kb on + strand, within Psyr_3229at 3867.952 kb on - strand, within Psyr_3229at 3867.952 kb on - strand, within Psyr_3229at 3867.952 kb on - strand, within Psyr_3229at 3867.952 kb on - strand, within Psyr_3229at 3867.952 kb on - strand, within Psyr_3229at 3867.952 kb on - strand, within Psyr_3229at 3867.952 kb on - strand, within Psyr_3229at 3867.972 kb on + strand, within Psyr_3229at 3867.973 kb on - strand, within Psyr_3229at 3867.973 kb on - strand, within Psyr_3229at 3867.973 kb on - strand, within Psyr_3229at 3868.073 kb on - strand, within Psyr_3229at 3868.083 kb on + strand, within Psyr_3229at 3868.083 kb on + strand, within Psyr_3229at 3868.083 kb on + strand, within Psyr_3229at 3868.084 kb on - strand, within Psyr_3229at 3868.084 kb on - strand, within Psyr_3229at 3868.386 kb on + strand, within Psyr_3229at 3868.422 kb on + strand, within Psyr_3229at 3868.527 kb on + strand, within Psyr_3229at 3868.527 kb on + strand, within Psyr_3229at 3868.683 kb on - strandat 3869.161 kb on + strand, within Psyr_3230at 3869.161 kb on + strand, within Psyr_3230at 3869.161 kb on + strand, within Psyr_3230at 3869.161 kb on + strand, within Psyr_3230at 3869.161 kb on + strand, within Psyr_3230at 3869.161 kb on + strand, within Psyr_3230at 3869.161 kb on + strand, within Psyr_3230at 3869.161 kb on + strand, within Psyr_3230at 3869.161 kb on + strand, within Psyr_3230at 3869.162 kb on - strand, within Psyr_3230at 3869.162 kb on - strand, within Psyr_3230at 3869.162 kb on - strand, within Psyr_3230at 3869.206 kb on + strand, within Psyr_3230at 3869.207 kb on - strand, within Psyr_3230at 3869.269 kb on + strand, within Psyr_3230at 3869.269 kb on + strand, within Psyr_3230at 3869.269 kb on + strand, within Psyr_3230at 3869.269 kb on + strand, within Psyr_3230at 3869.269 kb on + strand, within Psyr_3230at 3869.270 kb on - strand, within Psyr_3230at 3869.270 kb on - strand, within Psyr_3230at 3869.270 kb on - strand, within Psyr_3230at 3869.270 kb on - strand, within Psyr_3230at 3869.270 kb on - strand, within Psyr_3230at 3869.270 kb on - strand, within Psyr_3230at 3869.384 kb on - strand, within Psyr_3230at 3869.437 kb on + strand, within Psyr_3230at 3869.437 kb on + strand, within Psyr_3230at 3869.438 kb on - strand, within Psyr_3230at 3869.438 kb on - strand, within Psyr_3230at 3869.438 kb on - strand, within Psyr_3230at 3869.438 kb on - strand, within Psyr_3230at 3869.438 kb on - strand, within Psyr_3230at 3869.438 kb on - strand, within Psyr_3230at 3869.438 kb on - strand, within Psyr_3230at 3869.438 kb on - strand, within Psyr_3230at 3869.438 kb on - strand, within Psyr_3230at 3869.464 kb on + strand, within Psyr_3230at 3869.465 kb on - strand, within Psyr_3230at 3869.628 kb on + strand, within Psyr_3230at 3869.628 kb on + strand, within Psyr_3230at 3869.628 kb on + strand, within Psyr_3230at 3869.629 kb on - strand, within Psyr_3230

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Berberine 250 ug/ml
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3,866,746 + Psyr_3228 0.34 -0.9
3,866,746 + Psyr_3228 0.34 -1.3
3,866,912 - Psyr_3228 0.48 -2.8
3,866,912 - Psyr_3228 0.48 +0.4
3,866,932 + Psyr_3228 0.50 +0.3
3,866,933 - Psyr_3228 0.50 +0.0
3,866,933 - Psyr_3228 0.50 -0.3
3,867,019 + Psyr_3228 0.57 +0.3
3,867,536 - -1.9
3,867,536 - -0.4
3,867,689 - +0.6
3,867,746 - -1.3
3,867,761 + Psyr_3229 0.11 +0.1
3,867,856 - Psyr_3229 0.19 -0.6
3,867,916 - Psyr_3229 0.25 -0.9
3,867,916 - Psyr_3229 0.25 +0.9
3,867,951 + Psyr_3229 0.28 -0.3
3,867,951 + Psyr_3229 0.28 -0.9
3,867,951 + Psyr_3229 0.28 -1.2
3,867,951 + Psyr_3229 0.28 -0.0
3,867,951 + +2.3
3,867,951 + Psyr_3229 0.28 -1.8
3,867,951 + Psyr_3229 0.28 -0.3
3,867,951 + Psyr_3229 0.28 -0.7
3,867,951 + Psyr_3229 0.28 +0.1
3,867,952 - Psyr_3229 0.28 -1.8
3,867,952 - Psyr_3229 0.28 -0.9
3,867,952 - Psyr_3229 0.28 -0.9
3,867,952 - Psyr_3229 0.28 -0.3
3,867,952 - Psyr_3229 0.28 -1.3
3,867,952 - Psyr_3229 0.28 +1.0
3,867,952 - Psyr_3229 0.28 +1.4
3,867,972 + Psyr_3229 0.30 +1.1
3,867,973 - Psyr_3229 0.30 -0.7
3,867,973 - Psyr_3229 0.30 +0.9
3,867,973 - Psyr_3229 0.30 -0.7
3,868,073 - Psyr_3229 0.39 +0.2
3,868,083 + Psyr_3229 0.40 -0.5
3,868,083 + Psyr_3229 0.40 -0.9
3,868,083 + Psyr_3229 0.40 +0.1
3,868,084 - Psyr_3229 0.40 +0.1
3,868,084 - Psyr_3229 0.40 -0.0
3,868,386 + Psyr_3229 0.67 +2.0
3,868,422 + Psyr_3229 0.70 -0.9
3,868,527 + Psyr_3229 0.79 -0.8
3,868,527 + Psyr_3229 0.79 -0.6
3,868,683 - -0.6
3,869,161 + Psyr_3230 0.27 -2.1
3,869,161 + Psyr_3230 0.27 +0.1
3,869,161 + Psyr_3230 0.27 -0.2
3,869,161 + Psyr_3230 0.27 +0.3
3,869,161 + Psyr_3230 0.27 -0.4
3,869,161 + Psyr_3230 0.27 -0.7
3,869,161 + Psyr_3230 0.27 -0.3
3,869,161 + Psyr_3230 0.27 -1.1
3,869,161 + Psyr_3230 0.27 +0.3
3,869,162 - Psyr_3230 0.27 -0.7
3,869,162 - Psyr_3230 0.27 -0.3
3,869,162 - Psyr_3230 0.27 -0.1
3,869,206 + Psyr_3230 0.30 -0.7
3,869,207 - Psyr_3230 0.31 +1.7
3,869,269 + Psyr_3230 0.36 -1.9
3,869,269 + Psyr_3230 0.36 +1.1
3,869,269 + Psyr_3230 0.36 +1.3
3,869,269 + Psyr_3230 0.36 -0.4
3,869,269 + Psyr_3230 0.36 -0.6
3,869,270 - Psyr_3230 0.36 +0.1
3,869,270 - Psyr_3230 0.36 +0.4
3,869,270 - Psyr_3230 0.36 -0.7
3,869,270 - Psyr_3230 0.36 -0.9
3,869,270 - Psyr_3230 0.36 -0.0
3,869,270 - Psyr_3230 0.36 -0.0
3,869,384 - Psyr_3230 0.45 +0.6
3,869,437 + Psyr_3230 0.49 +0.3
3,869,437 + Psyr_3230 0.49 +1.0
3,869,438 - Psyr_3230 0.49 +0.2
3,869,438 - Psyr_3230 0.49 -1.6
3,869,438 - Psyr_3230 0.49 +0.0
3,869,438 - Psyr_3230 0.49 +0.5
3,869,438 - Psyr_3230 0.49 +1.1
3,869,438 - Psyr_3230 0.49 -0.3
3,869,438 - Psyr_3230 0.49 -1.6
3,869,438 - Psyr_3230 0.49 -1.3
3,869,438 - Psyr_3230 0.49 +0.7
3,869,464 + Psyr_3230 0.51 +0.2
3,869,465 - Psyr_3230 0.52 +0.9
3,869,628 + Psyr_3230 0.65 +1.0
3,869,628 + Psyr_3230 0.65 +0.7
3,869,628 + Psyr_3230 0.65 +0.5
3,869,629 - Psyr_3230 0.65 -0.2

Or see this region's nucleotide sequence