Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2977

Experiment: KB with Berberine 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2976 and Psyr_2977 are separated by 177 nucleotidesPsyr_2977 and Psyr_2978 are separated by 9 nucleotides Psyr_2976: Psyr_2976 - Phage integrase:Phage integrase, N-terminal SAM-like protein, at 3,568,468 to 3,569,427 _2976 Psyr_2977: Psyr_2977 - cointegrate resolution protein T, at 3,569,605 to 3,570,615 _2977 Psyr_2978: Psyr_2978 - PAS, at 3,570,625 to 3,571,899 _2978 Position (kb) 3569 3570 3571Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3568.664 kb on + strand, within Psyr_2976at 3568.664 kb on + strand, within Psyr_2976at 3568.665 kb on - strand, within Psyr_2976at 3568.747 kb on + strand, within Psyr_2976at 3568.747 kb on + strand, within Psyr_2976at 3568.748 kb on - strand, within Psyr_2976at 3568.748 kb on - strand, within Psyr_2976at 3568.748 kb on - strand, within Psyr_2976at 3568.752 kb on + strand, within Psyr_2976at 3568.816 kb on + strand, within Psyr_2976at 3568.816 kb on + strand, within Psyr_2976at 3568.816 kb on + strand, within Psyr_2976at 3568.816 kb on + strand, within Psyr_2976at 3568.816 kb on + strand, within Psyr_2976at 3568.816 kb on + strand, within Psyr_2976at 3568.816 kb on + strand, within Psyr_2976at 3568.816 kb on + strand, within Psyr_2976at 3568.816 kb on + strand, within Psyr_2976at 3568.816 kb on + strand, within Psyr_2976at 3568.816 kb on + strand, within Psyr_2976at 3568.816 kb on + strand, within Psyr_2976at 3568.816 kb on + strand, within Psyr_2976at 3568.816 kb on + strand, within Psyr_2976at 3568.817 kb on - strand, within Psyr_2976at 3568.817 kb on - strand, within Psyr_2976at 3568.817 kb on - strand, within Psyr_2976at 3568.817 kb on - strand, within Psyr_2976at 3568.817 kb on - strand, within Psyr_2976at 3568.817 kb on - strand, within Psyr_2976at 3568.817 kb on - strand, within Psyr_2976at 3568.817 kb on - strand, within Psyr_2976at 3568.817 kb on - strand, within Psyr_2976at 3568.817 kb on - strand, within Psyr_2976at 3568.817 kb on - strand, within Psyr_2976at 3568.817 kb on - strand, within Psyr_2976at 3568.817 kb on - strand, within Psyr_2976at 3568.817 kb on - strand, within Psyr_2976at 3568.818 kb on + strand, within Psyr_2976at 3568.819 kb on - strand, within Psyr_2976at 3568.819 kb on - strand, within Psyr_2976at 3568.820 kb on + strand, within Psyr_2976at 3568.820 kb on + strand, within Psyr_2976at 3568.820 kb on + strand, within Psyr_2976at 3568.820 kb on + strand, within Psyr_2976at 3568.821 kb on - strand, within Psyr_2976at 3568.821 kb on - strand, within Psyr_2976at 3568.821 kb on - strand, within Psyr_2976at 3568.821 kb on - strand, within Psyr_2976at 3568.821 kb on - strand, within Psyr_2976at 3568.821 kb on - strand, within Psyr_2976at 3568.821 kb on - strand, within Psyr_2976at 3568.821 kb on - strand, within Psyr_2976at 3568.863 kb on - strand, within Psyr_2976at 3568.907 kb on + strand, within Psyr_2976at 3568.907 kb on + strand, within Psyr_2976at 3568.907 kb on + strand, within Psyr_2976at 3568.908 kb on - strand, within Psyr_2976at 3568.908 kb on - strand, within Psyr_2976at 3568.908 kb on - strand, within Psyr_2976at 3568.908 kb on - strand, within Psyr_2976at 3568.948 kb on + strand, within Psyr_2976at 3568.949 kb on - strand, within Psyr_2976at 3568.949 kb on - strand, within Psyr_2976at 3569.111 kb on - strand, within Psyr_2976at 3569.408 kb on + strandat 3569.499 kb on - strandat 3569.521 kb on - strandat 3569.561 kb on + strandat 3569.595 kb on - strandat 3569.621 kb on + strandat 3569.633 kb on + strandat 3569.634 kb on - strandat 3569.693 kb on + strandat 3569.710 kb on - strand, within Psyr_2977at 3569.713 kb on - strand, within Psyr_2977at 3569.740 kb on + strand, within Psyr_2977at 3569.851 kb on - strand, within Psyr_2977at 3570.020 kb on + strand, within Psyr_2977at 3570.020 kb on + strand, within Psyr_2977at 3570.021 kb on - strand, within Psyr_2977at 3570.021 kb on - strand, within Psyr_2977at 3570.021 kb on - strand, within Psyr_2977at 3570.580 kb on - strandat 3570.694 kb on + strandat 3570.694 kb on + strandat 3570.694 kb on + strandat 3570.694 kb on + strandat 3570.694 kb on + strandat 3570.695 kb on - strandat 3570.695 kb on - strandat 3570.695 kb on - strandat 3570.695 kb on - strandat 3570.695 kb on - strandat 3570.695 kb on - strandat 3570.695 kb on - strandat 3570.697 kb on - strandat 3570.834 kb on + strand, within Psyr_2978at 3570.853 kb on + strand, within Psyr_2978at 3570.853 kb on + strand, within Psyr_2978at 3570.853 kb on + strand, within Psyr_2978at 3570.853 kb on + strand, within Psyr_2978at 3570.853 kb on + strand, within Psyr_2978at 3570.854 kb on - strand, within Psyr_2978at 3570.854 kb on - strand, within Psyr_2978at 3570.854 kb on - strand, within Psyr_2978at 3570.854 kb on - strand, within Psyr_2978at 3570.854 kb on - strand, within Psyr_2978at 3570.854 kb on - strand, within Psyr_2978at 3570.854 kb on - strand, within Psyr_2978at 3570.854 kb on - strand, within Psyr_2978at 3570.854 kb on - strand, within Psyr_2978at 3570.854 kb on - strand, within Psyr_2978at 3570.854 kb on - strand, within Psyr_2978at 3570.857 kb on + strand, within Psyr_2978at 3570.857 kb on + strand, within Psyr_2978at 3570.858 kb on - strand, within Psyr_2978at 3570.858 kb on - strand, within Psyr_2978at 3571.108 kb on + strand, within Psyr_2978at 3571.108 kb on + strand, within Psyr_2978at 3571.109 kb on - strand, within Psyr_2978at 3571.109 kb on - strand, within Psyr_2978at 3571.109 kb on - strand, within Psyr_2978at 3571.279 kb on + strand, within Psyr_2978at 3571.280 kb on - strand, within Psyr_2978at 3571.280 kb on - strand, within Psyr_2978at 3571.280 kb on - strand, within Psyr_2978at 3571.280 kb on - strand, within Psyr_2978at 3571.280 kb on - strand, within Psyr_2978at 3571.423 kb on - strand, within Psyr_2978at 3571.608 kb on + strand, within Psyr_2978at 3571.608 kb on + strand, within Psyr_2978at 3571.609 kb on - strand, within Psyr_2978at 3571.609 kb on - strand, within Psyr_2978

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Berberine 250 ug/ml
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3,568,664 + Psyr_2976 0.20 -1.7
3,568,664 + Psyr_2976 0.20 -1.0
3,568,665 - Psyr_2976 0.21 +0.4
3,568,747 + Psyr_2976 0.29 +0.2
3,568,747 + Psyr_2976 0.29 +0.6
3,568,748 - Psyr_2976 0.29 +0.2
3,568,748 - Psyr_2976 0.29 +1.2
3,568,748 - Psyr_2976 0.29 +0.2
3,568,752 + Psyr_2976 0.30 +1.2
3,568,816 + Psyr_2976 0.36 -0.4
3,568,816 + Psyr_2976 0.36 +0.9
3,568,816 + Psyr_2976 0.36 -0.2
3,568,816 + Psyr_2976 0.36 -1.7
3,568,816 + Psyr_2976 0.36 -0.4
3,568,816 + Psyr_2976 0.36 +0.2
3,568,816 + Psyr_2976 0.36 -0.9
3,568,816 + Psyr_2976 0.36 -0.3
3,568,816 + Psyr_2976 0.36 -0.5
3,568,816 + Psyr_2976 0.36 +0.2
3,568,816 + Psyr_2976 0.36 -0.5
3,568,816 + Psyr_2976 0.36 +1.1
3,568,816 + Psyr_2976 0.36 +2.9
3,568,816 + Psyr_2976 0.36 -0.7
3,568,817 - Psyr_2976 0.36 -3.5
3,568,817 - Psyr_2976 0.36 +0.6
3,568,817 - Psyr_2976 0.36 +0.1
3,568,817 - Psyr_2976 0.36 -0.2
3,568,817 - Psyr_2976 0.36 +0.0
3,568,817 - Psyr_2976 0.36 +1.5
3,568,817 - Psyr_2976 0.36 -1.0
3,568,817 - Psyr_2976 0.36 -0.8
3,568,817 - Psyr_2976 0.36 -1.0
3,568,817 - Psyr_2976 0.36 +0.4
3,568,817 - Psyr_2976 0.36 -1.7
3,568,817 - Psyr_2976 0.36 -1.7
3,568,817 - Psyr_2976 0.36 +0.9
3,568,817 - Psyr_2976 0.36 +0.6
3,568,818 + Psyr_2976 0.36 -1.2
3,568,819 - Psyr_2976 0.37 +1.9
3,568,819 - Psyr_2976 0.37 +0.1
3,568,820 + Psyr_2976 0.37 -0.6
3,568,820 + Psyr_2976 0.37 +1.0
3,568,820 + Psyr_2976 0.37 -1.7
3,568,820 + Psyr_2976 0.37 +0.4
3,568,821 - Psyr_2976 0.37 -1.0
3,568,821 - Psyr_2976 0.37 +1.2
3,568,821 - Psyr_2976 0.37 +0.6
3,568,821 - Psyr_2976 0.37 -1.7
3,568,821 - Psyr_2976 0.37 +0.1
3,568,821 - Psyr_2976 0.37 +1.6
3,568,821 - Psyr_2976 0.37 -0.1
3,568,821 - Psyr_2976 0.37 +0.7
3,568,863 - Psyr_2976 0.41 +0.2
3,568,907 + Psyr_2976 0.46 -1.7
3,568,907 + Psyr_2976 0.46 -0.6
3,568,907 + Psyr_2976 0.46 -0.5
3,568,908 - Psyr_2976 0.46 -1.4
3,568,908 - Psyr_2976 0.46 +0.6
3,568,908 - Psyr_2976 0.46 +2.9
3,568,908 - Psyr_2976 0.46 -1.8
3,568,948 + Psyr_2976 0.50 -0.4
3,568,949 - Psyr_2976 0.50 -0.4
3,568,949 - Psyr_2976 0.50 -0.4
3,569,111 - Psyr_2976 0.67 -1.0
3,569,408 + +0.1
3,569,499 - -1.0
3,569,521 - +2.2
3,569,561 + +0.9
3,569,595 - -0.8
3,569,621 + -2.0
3,569,633 + -2.2
3,569,634 - -1.2
3,569,693 + +0.4
3,569,710 - Psyr_2977 0.10 -2.4
3,569,713 - Psyr_2977 0.11 -0.9
3,569,740 + Psyr_2977 0.13 -2.1
3,569,851 - Psyr_2977 0.24 +0.3
3,570,020 + Psyr_2977 0.41 -2.7
3,570,020 + Psyr_2977 0.41 -0.7
3,570,021 - Psyr_2977 0.41 -1.2
3,570,021 - Psyr_2977 0.41 +0.0
3,570,021 - Psyr_2977 0.41 +0.1
3,570,580 - -0.1
3,570,694 + -1.0
3,570,694 + -1.4
3,570,694 + -1.0
3,570,694 + +0.9
3,570,694 + -0.1
3,570,695 - -0.4
3,570,695 - +1.6
3,570,695 - +0.7
3,570,695 - -0.7
3,570,695 - +0.4
3,570,695 - +0.8
3,570,695 - -0.4
3,570,697 - -0.5
3,570,834 + Psyr_2978 0.16 +0.6
3,570,853 + Psyr_2978 0.18 +1.5
3,570,853 + Psyr_2978 0.18 +0.0
3,570,853 + Psyr_2978 0.18 -1.0
3,570,853 + Psyr_2978 0.18 -0.1
3,570,853 + Psyr_2978 0.18 -0.4
3,570,854 - Psyr_2978 0.18 +0.0
3,570,854 - Psyr_2978 0.18 -1.6
3,570,854 - Psyr_2978 0.18 +0.6
3,570,854 - Psyr_2978 0.18 -0.7
3,570,854 - Psyr_2978 0.18 +0.9
3,570,854 - Psyr_2978 0.18 +0.4
3,570,854 - Psyr_2978 0.18 +0.7
3,570,854 - Psyr_2978 0.18 +1.9
3,570,854 - Psyr_2978 0.18 +1.0
3,570,854 - Psyr_2978 0.18 +0.3
3,570,854 - Psyr_2978 0.18 -1.6
3,570,857 + Psyr_2978 0.18 -0.1
3,570,857 + Psyr_2978 0.18 +1.3
3,570,858 - Psyr_2978 0.18 +0.0
3,570,858 - Psyr_2978 0.18 +0.5
3,571,108 + Psyr_2978 0.38 -0.7
3,571,108 + Psyr_2978 0.38 -1.0
3,571,109 - Psyr_2978 0.38 +1.3
3,571,109 - Psyr_2978 0.38 +1.1
3,571,109 - Psyr_2978 0.38 -1.0
3,571,279 + Psyr_2978 0.51 -0.7
3,571,280 - Psyr_2978 0.51 +1.2
3,571,280 - Psyr_2978 0.51 +1.6
3,571,280 - Psyr_2978 0.51 -0.7
3,571,280 - Psyr_2978 0.51 +0.4
3,571,280 - Psyr_2978 0.51 -0.1
3,571,423 - Psyr_2978 0.63 -1.1
3,571,608 + Psyr_2978 0.77 -0.7
3,571,608 + Psyr_2978 0.77 -0.7
3,571,609 - Psyr_2978 0.77 +0.3
3,571,609 - Psyr_2978 0.77 -0.3

Or see this region's nucleotide sequence