Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2975

Experiment: KB with Berberine 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2974 and Psyr_2975 are separated by 124 nucleotidesPsyr_2975 and Psyr_2976 are separated by 110 nucleotides Psyr_2974: Psyr_2974 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase, at 3,566,107 to 3,567,669 _2974 Psyr_2975: Psyr_2975 - Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen, at 3,567,794 to 3,568,357 _2975 Psyr_2976: Psyr_2976 - Phage integrase:Phage integrase, N-terminal SAM-like protein, at 3,568,468 to 3,569,427 _2976 Position (kb) 3567 3568 3569Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3566.883 kb on + strand, within Psyr_2974at 3566.883 kb on + strand, within Psyr_2974at 3566.985 kb on - strand, within Psyr_2974at 3566.985 kb on - strand, within Psyr_2974at 3567.149 kb on + strand, within Psyr_2974at 3567.149 kb on + strand, within Psyr_2974at 3567.149 kb on + strand, within Psyr_2974at 3567.150 kb on - strand, within Psyr_2974at 3567.241 kb on + strand, within Psyr_2974at 3567.302 kb on + strand, within Psyr_2974at 3567.489 kb on + strand, within Psyr_2974at 3567.489 kb on + strand, within Psyr_2974at 3567.490 kb on - strand, within Psyr_2974at 3567.490 kb on - strand, within Psyr_2974at 3567.686 kb on + strandat 3567.686 kb on + strandat 3567.695 kb on + strandat 3567.701 kb on + strandat 3567.702 kb on - strandat 3567.753 kb on - strandat 3567.832 kb on + strandat 3567.832 kb on + strandat 3567.833 kb on - strandat 3567.888 kb on + strand, within Psyr_2975at 3567.889 kb on - strand, within Psyr_2975at 3568.028 kb on + strand, within Psyr_2975at 3568.028 kb on + strand, within Psyr_2975at 3568.029 kb on - strand, within Psyr_2975at 3568.078 kb on - strand, within Psyr_2975at 3568.078 kb on - strand, within Psyr_2975at 3568.078 kb on - strand, within Psyr_2975at 3568.078 kb on - strand, within Psyr_2975at 3568.078 kb on - strand, within Psyr_2975at 3568.152 kb on + strand, within Psyr_2975at 3568.152 kb on + strand, within Psyr_2975at 3568.152 kb on + strand, within Psyr_2975at 3568.152 kb on + strand, within Psyr_2975at 3568.152 kb on + strand, within Psyr_2975at 3568.152 kb on + strand, within Psyr_2975at 3568.153 kb on - strand, within Psyr_2975at 3568.153 kb on - strand, within Psyr_2975at 3568.153 kb on - strand, within Psyr_2975at 3568.153 kb on - strand, within Psyr_2975at 3568.185 kb on + strand, within Psyr_2975at 3568.185 kb on + strand, within Psyr_2975at 3568.185 kb on + strand, within Psyr_2975at 3568.185 kb on + strand, within Psyr_2975at 3568.186 kb on - strand, within Psyr_2975at 3568.220 kb on + strand, within Psyr_2975at 3568.250 kb on + strand, within Psyr_2975at 3568.251 kb on - strand, within Psyr_2975at 3568.335 kb on - strandat 3568.335 kb on - strandat 3568.351 kb on + strandat 3568.361 kb on + strandat 3568.361 kb on + strandat 3568.361 kb on + strandat 3568.362 kb on - strandat 3568.362 kb on - strandat 3568.362 kb on - strandat 3568.362 kb on - strandat 3568.362 kb on - strandat 3568.363 kb on + strandat 3568.364 kb on - strandat 3568.364 kb on - strandat 3568.364 kb on - strandat 3568.410 kb on + strandat 3568.410 kb on + strandat 3568.411 kb on - strandat 3568.411 kb on - strandat 3568.482 kb on + strandat 3568.551 kb on - strandat 3568.551 kb on - strandat 3568.582 kb on + strand, within Psyr_2976at 3568.582 kb on + strand, within Psyr_2976at 3568.583 kb on - strand, within Psyr_2976at 3568.583 kb on - strand, within Psyr_2976at 3568.586 kb on + strand, within Psyr_2976at 3568.586 kb on + strand, within Psyr_2976at 3568.586 kb on + strand, within Psyr_2976at 3568.586 kb on + strand, within Psyr_2976at 3568.586 kb on + strand, within Psyr_2976at 3568.586 kb on + strand, within Psyr_2976at 3568.586 kb on + strand, within Psyr_2976at 3568.586 kb on + strand, within Psyr_2976at 3568.586 kb on + strand, within Psyr_2976at 3568.586 kb on + strand, within Psyr_2976at 3568.587 kb on - strand, within Psyr_2976at 3568.587 kb on - strand, within Psyr_2976at 3568.587 kb on - strand, within Psyr_2976at 3568.587 kb on - strand, within Psyr_2976at 3568.664 kb on + strand, within Psyr_2976at 3568.664 kb on + strand, within Psyr_2976at 3568.665 kb on - strand, within Psyr_2976at 3568.747 kb on + strand, within Psyr_2976at 3568.747 kb on + strand, within Psyr_2976at 3568.748 kb on - strand, within Psyr_2976at 3568.748 kb on - strand, within Psyr_2976at 3568.748 kb on - strand, within Psyr_2976at 3568.752 kb on + strand, within Psyr_2976at 3568.816 kb on + strand, within Psyr_2976at 3568.816 kb on + strand, within Psyr_2976at 3568.816 kb on + strand, within Psyr_2976at 3568.816 kb on + strand, within Psyr_2976at 3568.816 kb on + strand, within Psyr_2976at 3568.816 kb on + strand, within Psyr_2976at 3568.816 kb on + strand, within Psyr_2976at 3568.816 kb on + strand, within Psyr_2976at 3568.816 kb on + strand, within Psyr_2976at 3568.816 kb on + strand, within Psyr_2976at 3568.816 kb on + strand, within Psyr_2976at 3568.816 kb on + strand, within Psyr_2976at 3568.816 kb on + strand, within Psyr_2976at 3568.816 kb on + strand, within Psyr_2976at 3568.817 kb on - strand, within Psyr_2976at 3568.817 kb on - strand, within Psyr_2976at 3568.817 kb on - strand, within Psyr_2976at 3568.817 kb on - strand, within Psyr_2976at 3568.817 kb on - strand, within Psyr_2976at 3568.817 kb on - strand, within Psyr_2976at 3568.817 kb on - strand, within Psyr_2976at 3568.817 kb on - strand, within Psyr_2976at 3568.817 kb on - strand, within Psyr_2976at 3568.817 kb on - strand, within Psyr_2976at 3568.817 kb on - strand, within Psyr_2976at 3568.817 kb on - strand, within Psyr_2976at 3568.817 kb on - strand, within Psyr_2976at 3568.817 kb on - strand, within Psyr_2976at 3568.818 kb on + strand, within Psyr_2976at 3568.819 kb on - strand, within Psyr_2976at 3568.819 kb on - strand, within Psyr_2976at 3568.820 kb on + strand, within Psyr_2976at 3568.820 kb on + strand, within Psyr_2976at 3568.820 kb on + strand, within Psyr_2976at 3568.820 kb on + strand, within Psyr_2976at 3568.821 kb on - strand, within Psyr_2976at 3568.821 kb on - strand, within Psyr_2976at 3568.821 kb on - strand, within Psyr_2976at 3568.821 kb on - strand, within Psyr_2976at 3568.821 kb on - strand, within Psyr_2976at 3568.821 kb on - strand, within Psyr_2976at 3568.821 kb on - strand, within Psyr_2976at 3568.821 kb on - strand, within Psyr_2976at 3568.863 kb on - strand, within Psyr_2976at 3568.907 kb on + strand, within Psyr_2976at 3568.907 kb on + strand, within Psyr_2976at 3568.907 kb on + strand, within Psyr_2976at 3568.908 kb on - strand, within Psyr_2976at 3568.908 kb on - strand, within Psyr_2976at 3568.908 kb on - strand, within Psyr_2976at 3568.908 kb on - strand, within Psyr_2976at 3568.948 kb on + strand, within Psyr_2976at 3568.949 kb on - strand, within Psyr_2976at 3568.949 kb on - strand, within Psyr_2976at 3569.111 kb on - strand, within Psyr_2976

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Berberine 250 ug/ml
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3,566,883 + Psyr_2974 0.50 +0.6
3,566,883 + Psyr_2974 0.50 +0.0
3,566,985 - Psyr_2974 0.56 +0.0
3,566,985 - Psyr_2974 0.56 -2.4
3,567,149 + Psyr_2974 0.67 -0.5
3,567,149 + Psyr_2974 0.67 -0.4
3,567,149 + Psyr_2974 0.67 +0.6
3,567,150 - Psyr_2974 0.67 +1.2
3,567,241 + Psyr_2974 0.73 +0.1
3,567,302 + Psyr_2974 0.76 -2.6
3,567,489 + Psyr_2974 0.88 +1.9
3,567,489 + Psyr_2974 0.88 -0.2
3,567,490 - Psyr_2974 0.88 -1.3
3,567,490 - Psyr_2974 0.88 +0.6
3,567,686 + -2.4
3,567,686 + +1.2
3,567,695 + -1.2
3,567,701 + -2.2
3,567,702 - +0.2
3,567,753 - -1.7
3,567,832 + +0.6
3,567,832 + -1.0
3,567,833 - -0.0
3,567,888 + Psyr_2975 0.17 -1.2
3,567,889 - Psyr_2975 0.17 -2.2
3,568,028 + Psyr_2975 0.41 -0.2
3,568,028 + Psyr_2975 0.41 -0.9
3,568,029 - Psyr_2975 0.42 -0.7
3,568,078 - Psyr_2975 0.50 +1.2
3,568,078 - Psyr_2975 0.50 +0.2
3,568,078 - Psyr_2975 0.50 -0.7
3,568,078 - Psyr_2975 0.50 -1.0
3,568,078 - Psyr_2975 0.50 -0.1
3,568,152 + Psyr_2975 0.63 -1.0
3,568,152 + Psyr_2975 0.63 +0.4
3,568,152 + Psyr_2975 0.63 -0.4
3,568,152 + Psyr_2975 0.63 -0.8
3,568,152 + Psyr_2975 0.63 +1.2
3,568,152 + Psyr_2975 0.63 -0.7
3,568,153 - Psyr_2975 0.64 +1.2
3,568,153 - Psyr_2975 0.64 +0.6
3,568,153 - Psyr_2975 0.64 -0.1
3,568,153 - Psyr_2975 0.64 +0.7
3,568,185 + Psyr_2975 0.69 -1.7
3,568,185 + Psyr_2975 0.69 -1.0
3,568,185 + Psyr_2975 0.69 +0.6
3,568,185 + Psyr_2975 0.69 -1.7
3,568,186 - Psyr_2975 0.70 -0.9
3,568,220 + Psyr_2975 0.76 +0.2
3,568,250 + Psyr_2975 0.81 +0.6
3,568,251 - Psyr_2975 0.81 -0.4
3,568,335 - -0.3
3,568,335 - -0.6
3,568,351 + +0.8
3,568,361 + -1.7
3,568,361 + -0.9
3,568,361 + -0.9
3,568,362 - -1.0
3,568,362 - -0.3
3,568,362 - +0.8
3,568,362 - +0.4
3,568,362 - +0.4
3,568,363 + +2.6
3,568,364 - -0.8
3,568,364 - -0.4
3,568,364 - +0.1
3,568,410 + +0.4
3,568,410 + -0.1
3,568,411 - +0.6
3,568,411 - -1.0
3,568,482 + -0.4
3,568,551 - +1.9
3,568,551 - -1.1
3,568,582 + Psyr_2976 0.12 -2.0
3,568,582 + Psyr_2976 0.12 -0.3
3,568,583 - Psyr_2976 0.12 +0.6
3,568,583 - Psyr_2976 0.12 +0.2
3,568,586 + Psyr_2976 0.12 +0.0
3,568,586 + Psyr_2976 0.12 +0.8
3,568,586 + Psyr_2976 0.12 +0.0
3,568,586 + Psyr_2976 0.12 -1.7
3,568,586 + Psyr_2976 0.12 -1.0
3,568,586 + Psyr_2976 0.12 -0.6
3,568,586 + Psyr_2976 0.12 -1.5
3,568,586 + Psyr_2976 0.12 -0.1
3,568,586 + Psyr_2976 0.12 +0.5
3,568,586 + Psyr_2976 0.12 +0.8
3,568,587 - Psyr_2976 0.12 -0.9
3,568,587 - Psyr_2976 0.12 -1.4
3,568,587 - Psyr_2976 0.12 -1.2
3,568,587 - Psyr_2976 0.12 +1.6
3,568,664 + Psyr_2976 0.20 -1.7
3,568,664 + Psyr_2976 0.20 -1.0
3,568,665 - Psyr_2976 0.21 +0.4
3,568,747 + Psyr_2976 0.29 +0.2
3,568,747 + Psyr_2976 0.29 +0.6
3,568,748 - Psyr_2976 0.29 +0.2
3,568,748 - Psyr_2976 0.29 +1.2
3,568,748 - Psyr_2976 0.29 +0.2
3,568,752 + Psyr_2976 0.30 +1.2
3,568,816 + Psyr_2976 0.36 -0.4
3,568,816 + Psyr_2976 0.36 +0.9
3,568,816 + Psyr_2976 0.36 -0.2
3,568,816 + Psyr_2976 0.36 -1.7
3,568,816 + Psyr_2976 0.36 -0.4
3,568,816 + Psyr_2976 0.36 +0.2
3,568,816 + Psyr_2976 0.36 -0.9
3,568,816 + Psyr_2976 0.36 -0.3
3,568,816 + Psyr_2976 0.36 -0.5
3,568,816 + Psyr_2976 0.36 +0.2
3,568,816 + Psyr_2976 0.36 -0.5
3,568,816 + Psyr_2976 0.36 +1.1
3,568,816 + Psyr_2976 0.36 +2.9
3,568,816 + Psyr_2976 0.36 -0.7
3,568,817 - Psyr_2976 0.36 -3.5
3,568,817 - Psyr_2976 0.36 +0.6
3,568,817 - Psyr_2976 0.36 +0.1
3,568,817 - Psyr_2976 0.36 -0.2
3,568,817 - Psyr_2976 0.36 +0.0
3,568,817 - Psyr_2976 0.36 +1.5
3,568,817 - Psyr_2976 0.36 -1.0
3,568,817 - Psyr_2976 0.36 -0.8
3,568,817 - Psyr_2976 0.36 -1.0
3,568,817 - Psyr_2976 0.36 +0.4
3,568,817 - Psyr_2976 0.36 -1.7
3,568,817 - Psyr_2976 0.36 -1.7
3,568,817 - Psyr_2976 0.36 +0.9
3,568,817 - Psyr_2976 0.36 +0.6
3,568,818 + Psyr_2976 0.36 -1.2
3,568,819 - Psyr_2976 0.37 +1.9
3,568,819 - Psyr_2976 0.37 +0.1
3,568,820 + Psyr_2976 0.37 -0.6
3,568,820 + Psyr_2976 0.37 +1.0
3,568,820 + Psyr_2976 0.37 -1.7
3,568,820 + Psyr_2976 0.37 +0.4
3,568,821 - Psyr_2976 0.37 -1.0
3,568,821 - Psyr_2976 0.37 +1.2
3,568,821 - Psyr_2976 0.37 +0.6
3,568,821 - Psyr_2976 0.37 -1.7
3,568,821 - Psyr_2976 0.37 +0.1
3,568,821 - Psyr_2976 0.37 +1.6
3,568,821 - Psyr_2976 0.37 -0.1
3,568,821 - Psyr_2976 0.37 +0.7
3,568,863 - Psyr_2976 0.41 +0.2
3,568,907 + Psyr_2976 0.46 -1.7
3,568,907 + Psyr_2976 0.46 -0.6
3,568,907 + Psyr_2976 0.46 -0.5
3,568,908 - Psyr_2976 0.46 -1.4
3,568,908 - Psyr_2976 0.46 +0.6
3,568,908 - Psyr_2976 0.46 +2.9
3,568,908 - Psyr_2976 0.46 -1.8
3,568,948 + Psyr_2976 0.50 -0.4
3,568,949 - Psyr_2976 0.50 -0.4
3,568,949 - Psyr_2976 0.50 -0.4
3,569,111 - Psyr_2976 0.67 -1.0

Or see this region's nucleotide sequence