Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2691

Experiment: KB with Berberine 250 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Berberine 250 ug/ml
3,266,213	+				-1.2
3,266,214	-				-1.3
3,266,396	+		Psyr_2690	0.22	+0.9
3,266,396	+		Psyr_2690	0.22	-0.8
3,266,396	+		Psyr_2690	0.22	+0.2
3,266,396	+		Psyr_2690	0.22	-0.4
3,266,526	-		Psyr_2690	0.35	-0.7
3,266,798	+		Psyr_2690	0.62	-0.2
3,266,799	-		Psyr_2690	0.62	-1.0
3,266,980	-		Psyr_2690	0.80	+0.3
3,267,044	+		Psyr_2690	0.86	+1.3
3,267,060	-		Psyr_2690	0.88	+0.1
3,267,060	-		Psyr_2690	0.88	+0.8
3,267,060	-		Psyr_2690	0.88	-0.7
3,267,151	-				-0.7
3,267,151	-				+0.6
3,267,158	+				-0.8
3,267,158	+				-0.2
3,267,158	+				+0.5
3,267,158	+				-0.4
3,267,159	-				-0.7
3,267,159	-				+0.3
3,267,159	-				+0.7
3,267,159	-				-1.0
3,267,160	+				-0.9
3,267,160	+				-0.1
3,267,161	-				+0.3
3,267,161	-				+0.3
3,267,161	-				-1.1
3,267,186	+				-2.0
3,267,187	-				-0.3
3,267,187	-				-0.7
3,267,206	-				+1.3
3,267,253	+				-0.6
3,267,253	+				+0.3
3,267,430	+		Psyr_2691	0.13	-0.7
3,267,430	+		Psyr_2691	0.13	-0.0
3,267,430	+				-0.2
3,267,430	+		Psyr_2691	0.13	-0.6
3,267,430	+		Psyr_2691	0.13	+0.1
3,267,430	+		Psyr_2691	0.13	-0.7
3,267,431	-		Psyr_2691	0.13	+0.8
3,267,431	-		Psyr_2691	0.13	-0.8
3,267,443	+		Psyr_2691	0.13	-1.7
3,267,775	+		Psyr_2691	0.30	-0.5
3,267,776	-		Psyr_2691	0.30	+0.7
3,267,776	-		Psyr_2691	0.30	+0.2
3,267,776	-		Psyr_2691	0.30	-0.2
3,267,838	+		Psyr_2691	0.33	-0.5
3,267,838	+		Psyr_2691	0.33	+0.3
3,267,838	+		Psyr_2691	0.33	-0.5
3,267,839	-		Psyr_2691	0.33	-0.9
3,267,839	-		Psyr_2691	0.33	+0.9
3,267,839	-		Psyr_2691	0.33	-0.8
3,267,839	-		Psyr_2691	0.33	+2.9
3,267,839	-		Psyr_2691	0.33	-1.4
3,267,839	-		Psyr_2691	0.33	-2.0
3,268,046	-		Psyr_2691	0.44	+0.1
3,268,046	-		Psyr_2691	0.44	+0.5
3,268,381	+		Psyr_2691	0.60	-1.8
3,268,456	+		Psyr_2691	0.64	-0.9
3,268,456	+		Psyr_2691	0.64	-1.5
3,268,456	+		Psyr_2691	0.64	-2.0
3,268,457	-		Psyr_2691	0.64	+0.0
3,268,457	-		Psyr_2691	0.64	-0.4
3,268,457	-		Psyr_2691	0.64	-1.2
3,268,495	+		Psyr_2691	0.66	+1.9
3,268,577	-		Psyr_2691	0.70	+0.1
3,268,619	-		Psyr_2691	0.72	-0.2
3,269,011	+				-0.6
3,269,012	-				+0.9
3,269,205	+				-1.1
3,269,245	+				-1.2
3,269,245	+				-0.5
3,269,245	+				-1.0
3,269,245	+				+1.2
3,269,246	-				+0.2
3,269,246	-				-1.3
3,269,246	-				-0.4
3,269,557	+		Psyr_2692	0.44	-1.6
3,269,558	-		Psyr_2692	0.44	-2.5
3,269,558	-		Psyr_2692	0.44	+0.9
3,269,676	+		Psyr_2692	0.57	+0.2
3,269,677	-		Psyr_2692	0.57	-0.6
3,269,817	+		Psyr_2692	0.73	-1.4
3,269,817	+		Psyr_2692	0.73	+0.3
3,269,817	+		Psyr_2692	0.73	-0.3
3,269,817	+		Psyr_2692	0.73	-1.2
3,269,817	+		Psyr_2692	0.73	+0.1
3,269,818	-		Psyr_2692	0.73	-1.0
3,269,856	+		Psyr_2692	0.78	-1.0
3,269,914	+		Psyr_2692	0.84	-0.2
3,270,054	+				-2.0
3,270,055	-				-0.7
3,270,055	-				-0.6
3,270,107	+				-0.3
3,270,108	-				+0.8
3,270,108	-				-0.7
3,270,108	-				-0.0
3,270,108	-				-0.1