Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2482

Experiment: KB with Berberine 250 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Berberine 250 ug/ml
2,878,495	-		Psyr_2480	0.74	+0.5
2,878,495	-		Psyr_2480	0.74	+0.9
2,878,706	+				-0.9
2,878,754	+				+0.8
2,878,754	+				-0.8
2,878,754	+				-0.1
2,878,755	-				-0.9
2,878,755	-				-0.5
2,878,964	-		Psyr_2481	0.29	+1.1
2,878,988	+		Psyr_2481	0.33	-1.5
2,879,011	+		Psyr_2481	0.38	+0.1
2,879,015	+		Psyr_2481	0.39	-0.3
2,879,016	-		Psyr_2481	0.39	-1.7
2,879,016	-		Psyr_2481	0.39	+0.9
2,879,016	-		Psyr_2481	0.39	+1.9
2,879,169	+		Psyr_2481	0.69	-0.0
2,879,170	-		Psyr_2481	0.70	-0.9
2,879,170	-		Psyr_2481	0.70	+2.8
2,879,292	+				+0.8
2,879,293	-				+1.3
2,879,293	-				+0.5
2,879,319	+				-1.0
2,879,320	-				-0.3
2,879,334	+				+0.1
2,879,334	+				-2.2
2,879,335	-				-1.5
2,879,335	-				+2.1
2,879,335	-				-0.5
2,879,335	-				-1.0
2,879,335	-				-1.2
2,879,336	+				-0.7
2,879,382	+				+0.1
2,879,425	+				-0.5
2,879,425	+				-1.0
2,879,430	+				-0.5
2,879,430	+				+0.1
2,879,430	+				-1.5
2,879,431	-				+1.5
2,879,431	-				+0.2
2,879,431	-				-0.6
2,879,440	+				+1.9
2,879,441	-				-0.5
2,879,485	+				-0.5
2,879,485	+				-1.2
2,879,485	+				-0.9
2,879,718	+		Psyr_2482	0.19	-0.7
2,879,718	+		Psyr_2482	0.19	-0.1
2,879,719	-		Psyr_2482	0.19	-1.8
2,879,719	-		Psyr_2482	0.19	-1.3
2,879,719	-		Psyr_2482	0.19	-0.5
2,879,719	-		Psyr_2482	0.19	+0.3
2,879,722	-		Psyr_2482	0.19	-1.0
2,879,799	+		Psyr_2482	0.25	-1.1
2,879,800	-		Psyr_2482	0.25	-0.5
2,879,891	+		Psyr_2482	0.32	-1.1
2,880,018	+		Psyr_2482	0.42	-0.5
2,880,019	-		Psyr_2482	0.42	-0.8
2,880,425	+		Psyr_2482	0.73	-0.5
2,880,427	+		Psyr_2482	0.73	+0.0
2,880,427	+		Psyr_2482	0.73	-0.6
2,880,428	-		Psyr_2482	0.73	+1.0
2,880,428	-		Psyr_2482	0.73	+1.3
2,880,428	-		Psyr_2482	0.73	-0.5
2,880,511	-		Psyr_2482	0.79	-1.3
2,880,775	+				+1.1
2,880,775	+				+0.2
2,880,775	+				-0.4
2,880,775	-				-0.5
2,880,776	-				-0.8
2,880,776	-				+0.3
2,880,776	-				+0.5
2,880,776	-				+0.4
2,880,860	+				-0.7
2,880,862	+				-0.2
2,880,863	-				-0.5
2,881,048	+				-0.5
2,881,048	+				-1.0
2,881,160	+		Psyr_2483	0.12	-1.6
2,881,259	-		Psyr_2483	0.16	+0.1
2,881,496	+		Psyr_2483	0.23	-2.5