Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2473

Experiment: KB with Berberine 250 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Berberine 250 ug/ml
2,866,125	-				-1.8
2,866,125	-				-1.2
2,866,316	+		Psyr_2472	0.45	-0.0
2,866,317	-		Psyr_2472	0.45	-0.8
2,866,409	+		Psyr_2472	0.68	-0.4
2,866,410	-		Psyr_2472	0.68	-0.4
2,866,410	-		Psyr_2472	0.68	-0.5
2,866,410	-		Psyr_2472	0.68	+1.0
2,866,410	-		Psyr_2472	0.68	-1.0
2,866,410	-		Psyr_2472	0.68	-0.9
2,866,410	-		Psyr_2472	0.68	-0.1
2,866,413	+		Psyr_2472	0.69	-1.0
2,866,414	-		Psyr_2472	0.69	+0.2
2,866,414	-		Psyr_2472	0.69	+0.8
2,866,414	-		Psyr_2472	0.69	-0.9
2,866,414	-		Psyr_2472	0.69	-1.3
2,866,414	-		Psyr_2472	0.69	-0.4
2,866,414	-		Psyr_2472	0.69	-0.3
2,866,414	-		Psyr_2472	0.69	+0.7
2,866,414	-		Psyr_2472	0.69	-1.8
2,866,414	-		Psyr_2472	0.69	-1.3
2,866,414	-		Psyr_2472	0.69	-0.5
2,866,518	-				-0.1
2,866,518	-				-1.0
2,866,552	-				-0.2
2,866,552	-				-0.4
2,866,553	+				-0.8
2,866,554	-				-0.3
2,866,554	-				-1.3
2,866,554	-				-0.0
2,866,554	-				+1.8
2,866,554	-				-0.2
2,866,554	-				-1.8
2,866,554	-				-0.8
2,866,850	+		Psyr_2473	0.16	+0.8
2,866,850	+		Psyr_2473	0.16	+0.2
2,866,856	+		Psyr_2473	0.17	-1.0
2,866,856	+		Psyr_2473	0.17	-1.8
2,866,856	+		Psyr_2473	0.17	-2.2
2,866,856	+		Psyr_2473	0.17	-0.4
2,866,856	+		Psyr_2473	0.17	-0.9
2,866,857	-		Psyr_2473	0.17	-0.9
2,866,857	-		Psyr_2473	0.17	-0.7
2,866,857	-		Psyr_2473	0.17	-0.0
2,866,857	-		Psyr_2473	0.17	-0.0
2,866,857	-		Psyr_2473	0.17	-2.2
2,866,857	-		Psyr_2473	0.17	-1.8
2,866,940	+		Psyr_2473	0.26	-0.4
2,866,940	+		Psyr_2473	0.26	-0.7
2,866,940	+		Psyr_2473	0.26	-1.3
2,866,940	+		Psyr_2473	0.26	-0.5
2,866,940	+		Psyr_2473	0.26	-0.6
2,866,940	+		Psyr_2473	0.26	-0.4
2,866,940	+		Psyr_2473	0.26	+1.6
2,866,940	+		Psyr_2473	0.26	+0.7
2,866,940	+		Psyr_2473	0.26	-0.4
2,866,941	-		Psyr_2473	0.26	-1.3
2,866,941	-		Psyr_2473	0.26	+0.9
2,866,941	-		Psyr_2473	0.26	-0.4
2,866,941	-		Psyr_2473	0.26	-0.2
2,866,941	-		Psyr_2473	0.26	+0.2
2,867,031	+		Psyr_2473	0.36	-1.0
2,867,031	+		Psyr_2473	0.36	-0.8
2,867,037	+		Psyr_2473	0.36	+1.4
2,867,038	-		Psyr_2473	0.36	+0.6
2,867,118	-		Psyr_2473	0.45	+0.0
2,867,576	+				+1.9
2,867,577	-				-0.4
2,867,577	-				-1.4
2,867,667	+				+0.3
2,867,702	+				+0.6
2,867,702	+				+0.1
2,867,702	+				-1.3
2,867,702	+				+0.3
2,867,703	-				-0.7
2,867,724	-				-1.4
2,867,741	+				+0.1
2,867,741	+				+1.0
2,867,742	-				-2.2
2,867,742	-				-0.2
2,867,764	+				-1.4
2,867,765	-				+1.1
2,867,880	+				+0.0
2,867,880	+				+0.7
2,867,880	+				-1.3
2,867,881	-				-2.3
2,867,881	-				+1.3
2,867,881	-				-0.6
2,868,045	+		Psyr_2474	0.19	-0.2
2,868,046	-		Psyr_2474	0.19	-0.1