Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2103

Experiment: KB with Berberine 250 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Berberine 250 ug/ml
2,453,627	+				+1.5
2,453,733	+				-1.3
2,453,733	+				+0.9
2,453,734	-				+0.8
2,453,734	-				-0.5
2,453,734	-				+0.2
2,453,737	+				-0.2
2,453,896	+				-0.7
2,453,944	-				-1.2
2,453,997	-				+0.3
2,453,997	-				-0.4
2,453,997	-				+0.5
2,453,997	-				-0.3
2,454,029	+				+1.0
2,454,029	+				-2.2
2,454,029	+				+0.2
2,454,029	+				-0.4
2,454,029	+				-0.2
2,454,030	-				-1.8
2,454,030	-				-0.0
2,454,030	-				+0.8
2,454,030	-				-0.2
2,454,030	-				-0.5
2,454,141	+				-0.0
2,454,145	-				+0.8
2,454,180	+				-0.5
2,454,213	+				-1.2
2,454,266	+				-0.5
2,454,267	-				+1.6
2,454,270	+				+0.0
2,454,576	+				+0.7
2,454,577	-				+2.1
2,454,578	+				+0.5
2,454,591	+				+0.8
2,454,591	+				-0.0
2,454,592	-				-0.9
2,454,592	-				-0.9
2,454,626	-				-1.5
2,454,635	+				+1.8
2,454,635	+				-0.4
2,454,635	+				+0.4
2,454,635	+				+0.8
2,454,635	+				-0.2
2,454,635	+				+0.6
2,454,636	-				-0.1
2,454,739	+				+1.1
2,454,857	+		Psyr_2103	0.19	+0.3
2,454,930	-		Psyr_2103	0.25	+0.8
2,454,930	-		Psyr_2103	0.25	-0.2
2,455,058	+		Psyr_2103	0.35	+0.2
2,455,058	+		Psyr_2103	0.35	+0.1
2,455,058	+		Psyr_2103	0.35	-0.4
2,455,059	-		Psyr_2103	0.35	+0.5
2,455,059	-		Psyr_2103	0.35	-0.2
2,455,061	+		Psyr_2103	0.35	+1.2
2,455,061	+		Psyr_2103	0.35	-1.0
2,455,061	+		Psyr_2103	0.35	-0.8
2,455,062	-		Psyr_2103	0.35	+0.8
2,455,062	-		Psyr_2103	0.35	-0.2
2,455,062	-		Psyr_2103	0.35	-2.4
2,455,098	+		Psyr_2103	0.38	-0.5
2,455,099	-		Psyr_2103	0.38	-0.3
2,455,184	+		Psyr_2103	0.45	+3.1
2,455,184	+		Psyr_2103	0.45	+0.5
2,455,184	+		Psyr_2103	0.45	-1.6
2,455,184	+		Psyr_2103	0.45	+3.4
2,455,185	-		Psyr_2103	0.45	-0.5
2,455,265	+		Psyr_2103	0.52	+0.1
2,455,265	+		Psyr_2103	0.52	+0.2
2,455,265	+		Psyr_2103	0.52	-0.9
2,455,265	+		Psyr_2103	0.52	+0.0
2,455,265	+		Psyr_2103	0.52	-0.5
2,455,266	-		Psyr_2103	0.52	-0.2
2,455,266	-		Psyr_2103	0.52	-0.1
2,455,266	-		Psyr_2103	0.52	+0.0
2,455,266	-		Psyr_2103	0.52	-0.3
2,455,266	-		Psyr_2103	0.52	+1.9
2,455,282	+		Psyr_2103	0.53	-1.0
2,455,282	+		Psyr_2103	0.53	-1.8
2,455,434	+		Psyr_2103	0.65	-0.3
2,455,490	+		Psyr_2103	0.70	-1.6
2,455,490	+		Psyr_2103	0.70	+0.8
2,455,490	+		Psyr_2103	0.70	-0.4
2,455,490	+		Psyr_2103	0.70	-0.2
2,455,491	-		Psyr_2103	0.70	-0.0
2,455,511	+		Psyr_2103	0.71	-1.1
2,455,512	-		Psyr_2103	0.71	+0.4
2,455,514	+		Psyr_2103	0.72	+0.8
2,455,514	+		Psyr_2103	0.72	-0.4
2,455,514	+		Psyr_2103	0.72	-0.9
2,455,540	+		Psyr_2103	0.74	-0.1
2,455,541	-		Psyr_2103	0.74	+0.4
2,455,578	-		Psyr_2103	0.77	+0.1
2,455,673	+		Psyr_2103	0.84	-0.4
2,455,674	-		Psyr_2103	0.84	+0.1
2,455,745	+				-0.3
2,455,820	+				+1.0
2,455,820	+				-0.1
2,455,820	+				-0.1
2,455,820	+				-1.5
2,455,821	-				-0.5
2,455,821	-				+0.8
2,455,821	-				+1.8
2,455,821	-				-0.2
2,456,016	+		Psyr_2104	0.15	-0.8
2,456,016	+		Psyr_2104	0.15	-0.8
2,456,016	+		Psyr_2104	0.15	+1.4
2,456,016	+		Psyr_2104	0.15	+1.5
2,456,016	+		Psyr_2104	0.15	-0.7
2,456,016	+		Psyr_2104	0.15	+0.5
2,456,016	+		Psyr_2104	0.15	+1.5
2,456,016	+		Psyr_2104	0.15	-0.2
2,456,016	+		Psyr_2104	0.15	+0.1
2,456,017	-		Psyr_2104	0.16	+0.3
2,456,017	-		Psyr_2104	0.16	+0.5
2,456,017	-		Psyr_2104	0.16	+0.5
2,456,205	+		Psyr_2104	0.48	-0.3
2,456,205	+		Psyr_2104	0.48	-0.6
2,456,206	-		Psyr_2104	0.48	+0.2
2,456,208	-		Psyr_2104	0.49	-1.0
2,456,208	-		Psyr_2104	0.49	+1.6
2,456,208	-		Psyr_2104	0.49	+0.1
2,456,208	-		Psyr_2104	0.49	+1.2
2,456,208	-		Psyr_2104	0.49	+0.5
2,456,437	+		Psyr_2104	0.89	+0.8
2,456,484	+				-0.8
2,456,485	-				-2.0
2,456,493	+				-1.8
2,456,506	+				-1.8
2,456,506	+				+1.2
2,456,507	-				+0.8
2,456,507	-				-0.4
2,456,570	+				+0.4
2,456,570	+				-0.6
2,456,571	-				-1.2
2,456,683	+		Psyr_2105	0.14	-0.9
2,456,798	-		Psyr_2105	0.23	-0.9