Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2000

Experiment: KB with Berberine 250 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Berberine 250 ug/ml
2,320,261	+				+0.2
2,320,261	+				-0.9
2,320,263	+				-1.2
2,320,340	+		Psyr_1999	0.16	+1.5
2,320,420	-		Psyr_1999	0.26	-0.0
2,320,450	-		Psyr_1999	0.30	-0.4
2,320,455	+		Psyr_1999	0.31	+0.7
2,320,550	+		Psyr_1999	0.42	+1.0
2,320,789	-		Psyr_1999	0.71	+0.2
2,320,790	+		Psyr_1999	0.72	-0.2
2,320,791	-		Psyr_1999	0.72	-1.9
2,320,892	+		Psyr_1999	0.84	+1.5
2,321,023	-				+0.7
2,321,185	+				-0.6
2,321,195	+				-0.9
2,321,195	+				-0.0
2,321,195	+				+2.3
2,321,195	+				-0.9
2,321,196	-				+0.6
2,321,196	-				-0.8
2,321,196	-				-0.6
2,321,196	-				-0.0
2,321,257	+				+1.0
2,321,306	-				-0.0
2,321,375	+				-0.2
2,321,375	+				+0.6
2,321,375	+				-0.6
2,321,375	+				-0.1
2,321,375	+				+1.4
2,321,376	-				-1.4
2,321,440	+		Psyr_2000	0.14	-0.0
2,321,440	+		Psyr_2000	0.14	+0.5
2,321,440	+		Psyr_2000	0.14	+0.2
2,321,440	+		Psyr_2000	0.14	-1.4
2,321,440	+		Psyr_2000	0.14	-2.0
2,321,440	+		Psyr_2000	0.14	-2.4
2,321,440	+		Psyr_2000	0.14	-0.6
2,321,441	-		Psyr_2000	0.14	+0.2
2,321,441	-		Psyr_2000	0.14	+0.5
2,321,600	-		Psyr_2000	0.25	-1.4
2,321,600	-		Psyr_2000	0.25	-1.0
2,321,671	+		Psyr_2000	0.30	-1.0
2,321,671	+		Psyr_2000	0.30	-0.0
2,321,671	+		Psyr_2000	0.30	-2.6
2,321,671	+		Psyr_2000	0.30	-0.0
2,321,671	+		Psyr_2000	0.30	-0.8
2,321,671	+		Psyr_2000	0.30	+0.7
2,321,671	+		Psyr_2000	0.30	-0.8
2,321,671	+		Psyr_2000	0.30	+2.0
2,321,671	+		Psyr_2000	0.30	-1.0
2,321,671	+		Psyr_2000	0.30	+0.4
2,321,671	+		Psyr_2000	0.30	-2.4
2,321,672	-		Psyr_2000	0.30	+0.2
2,321,672	-		Psyr_2000	0.30	+1.8
2,321,672	-		Psyr_2000	0.30	+0.6
2,321,672	-		Psyr_2000	0.30	-0.6
2,321,672	-		Psyr_2000	0.30	-1.4
2,321,672	-		Psyr_2000	0.30	+1.2
2,321,672	-		Psyr_2000	0.30	-0.9
2,321,672	-		Psyr_2000	0.30	-0.1
2,321,672	-		Psyr_2000	0.30	-0.5
2,321,672	-		Psyr_2000	0.30	-0.8
2,321,672	-		Psyr_2000	0.30	+1.4
2,321,672	-		Psyr_2000	0.30	-0.0
2,321,721	+		Psyr_2000	0.33	+0.2
2,322,094	+		Psyr_2000	0.59	-1.6
2,322,095	-		Psyr_2000	0.59	+0.2
2,322,095	-		Psyr_2000	0.59	+0.3
2,322,116	+		Psyr_2000	0.61	+1.0
2,322,116	+		Psyr_2000	0.61	+0.5
2,322,166	+		Psyr_2000	0.64	-0.4
2,322,167	-		Psyr_2000	0.64	-2.5
2,322,167	-		Psyr_2000	0.64	+0.4
2,322,167	-		Psyr_2000	0.64	+1.5
2,322,232	+		Psyr_2000	0.69	-0.6
2,322,382	+		Psyr_2000	0.79	-0.2
2,322,382	+		Psyr_2000	0.79	-0.4
2,322,383	-		Psyr_2000	0.79	+0.4
2,322,570	+				-0.0
2,322,570	+				-0.1
2,322,570	+				+0.4
2,322,571	-				-0.5
2,322,571	-				-1.0
2,322,571	-				-0.6
2,322,571	-				-0.6
2,322,650	+				-0.8
2,322,650	+				+0.4
2,322,650	+				+1.0
2,322,650	+				+0.1
2,322,650	+				+2.0
2,322,651	-				-0.2
2,322,674	-				-0.2
2,322,792	+				-2.0
2,322,831	-				+2.3
2,323,257	+		Psyr_2001	0.72	-1.8
2,323,377	+				-0.0
2,323,377	+				-0.4
2,323,397	+				+0.2
2,323,397	+				-0.8
2,323,397	+				+1.0
2,323,397	+				-1.0
2,323,397	+				-0.2
2,323,397	+				-1.0
2,323,398	-				-2.4
2,323,398	-				-0.0
2,323,398	-				-0.4
2,323,398	-				+0.5
2,323,432	+				-0.6
2,323,432	+				-0.4
2,323,432	+				-2.0
2,323,432	+				-0.4
2,323,433	-				+0.1
2,323,433	-				-0.9
2,323,433	-				+0.2
2,323,433	-				-0.9
2,323,433	-				+0.6
2,323,433	-				-1.5
2,323,563	+		Psyr_2002	0.13	-0.0