Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1998

Experiment: KB with Berberine 250 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Berberine 250 ug/ml
2,318,917	+				-0.6
2,318,918	-				-1.5
2,318,918	-				-0.3
2,318,918	-				-0.0
2,318,919	+				-0.0
2,318,920	-				+0.5
2,318,995	-				+0.4
2,319,001	+				+0.6
2,319,139	-		Psyr_1997	0.15	-1.3
2,319,342	+		Psyr_1997	0.39	-1.0
2,319,343	-		Psyr_1997	0.39	-0.9
2,319,567	+		Psyr_1997	0.66	-1.2
2,319,567	+		Psyr_1997	0.66	-1.3
2,319,568	-		Psyr_1997	0.66	-0.0
2,319,568	-		Psyr_1997	0.66	+0.4
2,319,568	-		Psyr_1997	0.66	+2.3
2,319,568	-		Psyr_1997	0.66	+0.6
2,319,600	-		Psyr_1997	0.70	+0.2
2,319,613	+		Psyr_1997	0.72	+1.2
2,319,614	-		Psyr_1997	0.72	-0.6
2,319,843	+				-0.1
2,319,843	+				+0.4
2,319,844	-				-0.4
2,320,060	+		Psyr_1998	0.58	+0.6
2,320,061	-		Psyr_1998	0.58	+0.7
2,320,061	-		Psyr_1998	0.58	-1.2
2,320,061	-		Psyr_1998	0.58	+1.0
2,320,214	+				-0.8
2,320,261	+				+0.2
2,320,261	+				-0.9
2,320,263	+				-1.2
2,320,340	+		Psyr_1999	0.16	+1.5
2,320,420	-		Psyr_1999	0.26	-0.0
2,320,450	-		Psyr_1999	0.30	-0.4
2,320,455	+		Psyr_1999	0.31	+0.7
2,320,550	+		Psyr_1999	0.42	+1.0
2,320,789	-		Psyr_1999	0.71	+0.2
2,320,790	+		Psyr_1999	0.72	-0.2
2,320,791	-		Psyr_1999	0.72	-1.9
2,320,892	+		Psyr_1999	0.84	+1.5
2,321,023	-				+0.7
2,321,185	+				-0.6
2,321,195	+				-0.9
2,321,195	+				-0.0
2,321,195	+				+2.3
2,321,195	+				-0.9
2,321,196	-				+0.6
2,321,196	-				-0.8
2,321,196	-				-0.6
2,321,196	-				-0.0