Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1979

Experiment: KB with Berberine 250 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Berberine 250 ug/ml
2,296,891	+				-0.9
2,296,922	+				-0.4
2,296,927	-				+0.4
2,296,927	-				+0.6
2,297,003	-				+0.3
2,297,003	-				-1.8
2,297,003	-				-1.0
2,297,060	+				-0.4
2,297,062	+				-0.6
2,297,062	+				-1.8
2,297,062	+				-1.0
2,297,062	+				+1.4
2,297,062	+				-0.0
2,297,062	+				-0.6
2,297,062	+				-1.3
2,297,062	+				+1.0
2,297,062	+				-0.5
2,297,062	+				-0.3
2,297,062	+				-1.1
2,297,062	+				+0.4
2,297,062	+				+0.1
2,297,062	+				-0.8
2,297,062	+				+0.4
2,297,063	-				+0.4
2,297,063	-				+0.8
2,297,063	-				-0.4
2,297,063	-				-2.3
2,297,063	-				-0.0
2,297,063	-				+0.7
2,297,063	-				-0.8
2,297,063	-				-0.0
2,297,063	-				+0.6
2,297,063	-				-1.9
2,297,063	-				+2.2
2,297,063	-				-0.9
2,297,063	-				-0.0
2,297,063	-				-0.5
2,297,063	-				-1.1
2,297,063	-				-0.3
2,297,063	-				-0.9
2,297,063	-				-0.3
2,297,063	-				-0.4
2,297,063	-				-0.5
2,297,066	+				+0.5
2,297,066	+				-0.3
2,297,066	+				+0.1
2,297,066	+				-0.4
2,297,066	+				-0.2
2,297,066	+				-0.7
2,297,066	+				-1.2
2,297,067	-				+0.5
2,297,067	-				-0.0
2,297,067	-				-0.6
2,297,067	-				-0.3
2,297,067	-				+1.8
2,297,067	-				-1.9
2,297,067	-				+0.0
2,297,067	-				+2.5
2,297,067	-				-2.4
2,297,067	-				+0.4
2,297,067	-				-0.9
2,297,067	-				+0.6
2,297,067	-				-0.3
2,297,067	-				+0.5
2,297,067	-				+1.0
2,297,103	+				+0.5
2,297,103	+				-1.7
2,297,103	+				-0.0
2,297,103	+				-0.4
2,297,103	+				+0.6
2,297,104	-				-0.2
2,297,104	-				-0.5
2,297,104	-				+0.5
2,297,104	-				-0.1
2,297,104	-				-2.5
2,297,183	-				+0.1
2,297,241	-				+0.6
2,297,241	-				-1.7
2,297,334	+				+1.0
2,297,334	+				+0.3
2,297,334	+				-1.1
2,297,335	-				+2.0
2,297,335	-				-2.4
2,297,335	-				+1.0
2,297,335	-				+0.2
2,297,335	-				+1.3
2,297,335	-				-1.6
2,297,443	+		Psyr_1978	0.19	-2.2
2,297,443	+		Psyr_1978	0.19	-0.0
2,297,443	+		Psyr_1978	0.19	+1.0
2,297,443	+		Psyr_1978	0.19	+1.4
2,297,443	+		Psyr_1978	0.19	-0.9
2,297,444	-		Psyr_1978	0.20	+0.3
2,297,444	-		Psyr_1978	0.20	-1.0
2,297,444	-		Psyr_1978	0.20	-0.1
2,297,444	-		Psyr_1978	0.20	-1.1
2,297,444	-		Psyr_1978	0.20	+0.6
2,297,444	-		Psyr_1978	0.20	+0.3
2,297,444	-		Psyr_1978	0.20	-1.1
2,297,444	-		Psyr_1978	0.20	-0.5
2,297,444	-		Psyr_1978	0.20	-0.4
2,297,444	-		Psyr_1978	0.20	+0.1
2,297,444	-		Psyr_1978	0.20	-1.5
2,297,444	-		Psyr_1978	0.20	-0.6
2,297,762	-		Psyr_1978	0.89	-1.0
2,297,812	+				-0.3
2,297,977	-		Psyr_1979	0.14	+2.5
2,297,977	-		Psyr_1979	0.14	-1.1
2,297,977	-		Psyr_1979	0.14	-0.1
2,297,982	+		Psyr_1979	0.14	-1.4
2,297,982	+		Psyr_1979	0.14	-1.5
2,297,982	+		Psyr_1979	0.14	-0.6
2,297,982	+		Psyr_1979	0.14	-0.6
2,297,982	+		Psyr_1979	0.14	-0.9
2,297,982	+		Psyr_1979	0.14	-0.1
2,297,983	-		Psyr_1979	0.14	-1.2
2,297,983	-		Psyr_1979	0.14	+0.3
2,297,983	-		Psyr_1979	0.14	-2.8
2,297,983	-		Psyr_1979	0.14	+0.1
2,297,983	-		Psyr_1979	0.14	+0.1
2,297,988	+		Psyr_1979	0.15	-1.1
2,297,988	+		Psyr_1979	0.15	-0.6
2,297,988	+		Psyr_1979	0.15	-2.6
2,297,989	-		Psyr_1979	0.15	-2.6
2,297,989	-		Psyr_1979	0.15	-0.6
2,297,989	-		Psyr_1979	0.15	-0.8
2,297,989	-		Psyr_1979	0.15	-0.2
2,297,989	-		Psyr_1979	0.15	-0.6
2,298,029	+		Psyr_1979	0.19	-0.4
2,298,244	+		Psyr_1979	0.41	-0.4
2,298,369	+		Psyr_1979	0.54	-0.6
2,298,369	+		Psyr_1979	0.54	+1.5
2,298,731	+				+1.1
2,298,731	+				+2.5
2,298,731	+				-0.9
2,298,732	-				+0.4
2,298,732	-				-2.4
2,298,769	+				-2.2
2,298,770	-				+1.4
2,298,770	-				-0.6
2,298,870	+				+0.5
2,298,871	-				+0.6
2,298,908	-				+1.6
2,298,944	+				-0.6
2,298,945	-				-3.0
2,299,053	+		Psyr_1980	0.26	-1.1
2,299,053	+		Psyr_1980	0.26	+0.2
2,299,054	-		Psyr_1980	0.26	-0.8
2,299,200	+		Psyr_1980	0.59	+0.4
2,299,201	-		Psyr_1980	0.59	-0.2
2,299,201	-		Psyr_1980	0.59	-0.6
2,299,201	-		Psyr_1980	0.59	-1.4
2,299,259	+		Psyr_1980	0.72	+0.2
2,299,413	+				-0.8
2,299,414	-				-2.0
2,299,538	+				+0.2
2,299,547	+				+0.2
2,299,547	+				-0.1
2,299,547	-				+0.4
2,299,548	-				-0.7
2,299,548	-				+0.5
2,299,548	-				-1.6
2,299,553	+				-0.3
2,299,554	-				-3.1
2,299,554	-				+1.3
2,299,742	+		Psyr_1981	0.13	-0.5
2,299,742	+		Psyr_1981	0.13	+1.4
2,299,742	+		Psyr_1981	0.13	-0.4
2,299,742	+		Psyr_1981	0.13	+0.8
2,299,742	+		Psyr_1981	0.13	+0.3
2,299,743	-		Psyr_1981	0.13	-2.8
2,299,743	-		Psyr_1981	0.13	+0.9