Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1973

Experiment: KB with Berberine 250 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Berberine 250 ug/ml
2,287,819	+		Psyr_1971	0.85	-0.1
2,287,898	+		Psyr_1971	0.88	-1.9
2,287,898	+		Psyr_1971	0.88	-1.4
2,287,898	+		Psyr_1971	0.88	+0.1
2,288,136	-				-1.3
2,288,283	+		Psyr_1972	0.18	-1.0
2,288,284	-		Psyr_1972	0.19	-1.2
2,288,284	-		Psyr_1972	0.19	-0.8
2,288,284	-		Psyr_1972	0.19	-0.4
2,288,323	+		Psyr_1972	0.31	+0.1
2,288,324	-		Psyr_1972	0.31	-1.9
2,288,532	-				-0.6
2,288,541	+				-0.6
2,288,542	-				+0.9
2,288,542	-				-2.2
2,288,542	-				+0.5
2,288,542	-				-1.3
2,288,657	-				-1.0
2,288,664	-				-0.9
2,288,664	-				-0.6
2,288,664	-				-0.6
2,288,671	-				-0.4
2,288,671	-				-0.3
2,288,671	-				-1.9
2,288,677	+				-1.1
2,288,677	+				-0.4
2,288,677	+				+0.1
2,288,678	-				+0.7
2,288,678	-				-0.4
2,288,684	+				-0.7
2,288,684	+				+0.2
2,288,691	+				+1.2
2,288,691	+				-0.1
2,288,692	-				+0.6
2,288,692	-				+1.5
2,288,705	+				-0.5
2,288,705	+				-2.2
2,288,705	+				+0.1
2,288,705	+				+0.5
2,288,839	+				-1.2
2,288,839	+				+0.7
2,288,840	-				+1.9
2,288,840	-				+0.9
2,288,840	-				+0.4
2,288,840	-				-0.6
2,288,840	-				+0.9
2,288,878	-				-0.5
2,288,897	+				-0.4
2,288,897	+				-0.6
2,288,898	-				-0.1
2,289,152	+		Psyr_1973	0.29	-0.1
2,289,152	+		Psyr_1973	0.29	-0.2
2,289,152	+		Psyr_1973	0.29	-0.1
2,289,249	-		Psyr_1973	0.37	-0.7
2,289,551	+		Psyr_1973	0.62	-0.4
2,290,084	+				+0.9
2,290,084	+				-1.1
2,290,085	-				-1.4
2,290,085	-				-0.6
2,290,085	-				+0.6
2,290,085	-				-0.3
2,290,085	-				-0.5
2,290,087	+				-2.1
2,290,087	+				-0.9
2,290,087	+				-1.4
2,290,087	+				+1.3
2,290,087	+				+0.9
2,290,089	+				+0.2
2,290,090	-				-2.2
2,290,090	-				+0.1
2,290,090	-				+0.2
2,290,149	+				-0.1
2,290,149	+				-1.4
2,290,149	+				-1.5
2,290,150	-				-2.4
2,290,150	-				-0.5
2,290,150	-				+1.5
2,290,156	-				+0.9
2,290,188	+				+0.9
2,290,188	+				-0.6
2,290,212	+				-0.5
2,290,212	+				+0.4
2,290,212	+				-0.6
2,290,212	+				-2.9
2,290,212	+				-0.3
2,290,213	-				+0.1
2,290,213	-				+0.9
2,290,213	-				-2.2
2,290,214	+				-0.9
2,290,214	+				-1.9
2,290,214	+				-0.4
2,290,214	+				-0.4
2,290,214	+				-0.4
2,290,214	+				+0.4
2,290,214	+				-0.3
2,290,214	+				+1.7
2,290,214	+				-1.2
2,290,215	-				-0.9
2,290,215	-				+0.5
2,290,215	-				+1.4
2,290,215	-				-1.1
2,290,215	-				-0.4
2,290,215	-				+1.3
2,290,215	-				-2.2
2,290,216	-				-0.2
2,290,226	+				-1.4
2,290,226	+				-0.1
2,290,227	-				-1.5
2,290,227	-				-0.8
2,290,227	-				-1.1
2,290,404	+				+0.0
2,290,405	-				+0.9
2,290,405	-				+1.3
2,290,405	-				-1.3
2,290,405	-				-2.1
2,290,663	+		Psyr_1974	0.13	-0.9
2,290,664	-		Psyr_1974	0.13	-2.0
2,290,664	-		Psyr_1974	0.13	-0.4
2,290,676	-		Psyr_1974	0.13	-1.6
2,290,684	+		Psyr_1974	0.14	-0.1
2,290,684	+		Psyr_1974	0.14	-0.6
2,290,685	-		Psyr_1974	0.14	+1.1
2,290,687	+		Psyr_1974	0.14	-0.5
2,290,687	+		Psyr_1974	0.14	-1.1
2,290,702	+		Psyr_1974	0.15	-0.1
2,290,702	+		Psyr_1974	0.15	+0.2
2,290,702	+		Psyr_1974	0.15	-1.9
2,290,702	+		Psyr_1974	0.15	-1.4
2,290,703	-		Psyr_1974	0.15	-0.8
2,290,703	-		Psyr_1974	0.15	+0.6
2,290,837	+		Psyr_1974	0.21	-0.7
2,290,838	-		Psyr_1974	0.21	-0.5
2,290,861	+		Psyr_1974	0.23	-2.8
2,290,942	+		Psyr_1974	0.27	-0.4
2,290,942	+		Psyr_1974	0.27	-0.6
2,290,943	-		Psyr_1974	0.27	-0.4
2,290,943	-		Psyr_1974	0.27	-1.4
2,290,943	-		Psyr_1974	0.27	-0.4