Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1962

Experiment: KB with Berberine 250 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Berberine 250 ug/ml
2,270,188	+		Psyr_1961	0.74	+2.0
2,270,188	+		Psyr_1961	0.74	-0.5
2,270,188	+		Psyr_1961	0.74	-0.6
2,270,188	+		Psyr_1961	0.74	-0.4
2,270,188	+		Psyr_1961	0.74	-0.4
2,270,188	+		Psyr_1961	0.74	-0.0
2,270,188	+		Psyr_1961	0.74	+0.4
2,270,189	-		Psyr_1961	0.74	-1.5
2,270,189	-		Psyr_1961	0.74	-1.0
2,270,189	-		Psyr_1961	0.74	-0.9
2,270,189	-		Psyr_1961	0.74	+0.6
2,270,189	-		Psyr_1961	0.74	+0.5
2,270,401	+		Psyr_1961	0.83	-0.1
2,270,526	+		Psyr_1961	0.88	-2.0
2,271,053	-				+0.1
2,271,066	+				+0.4
2,271,066	+				-1.7
2,271,066	+				+1.0
2,271,067	-				-0.6
2,271,067	-				-0.6
2,271,067	-				-0.2
2,271,098	+				+0.2
2,271,116	+				+0.6
2,271,152	+				-1.4
2,271,153	-				-0.4
2,271,153	-				-0.0
2,271,153	-				-0.9
2,271,153	-				-1.4
2,271,155	+				-0.9
2,271,156	-				-1.4
2,271,156	-				-2.0
2,271,345	-		Psyr_1962	0.12	+1.0
2,271,345	-		Psyr_1962	0.12	-0.7
2,271,422	+		Psyr_1962	0.16	-1.4
2,271,422	+		Psyr_1962	0.16	-2.0
2,271,422	+		Psyr_1962	0.16	-0.0
2,271,423	-		Psyr_1962	0.16	-0.5
2,271,423	-		Psyr_1962	0.16	-0.6
2,271,423	-		Psyr_1962	0.16	-0.0
2,271,423	-		Psyr_1962	0.16	+0.4
2,271,457	+		Psyr_1962	0.17	+0.1
2,271,516	-		Psyr_1962	0.20	+0.4
2,271,549	+		Psyr_1962	0.21	+1.3
2,271,549	+		Psyr_1962	0.21	+0.5
2,271,550	-		Psyr_1962	0.21	-1.6
2,271,550	-		Psyr_1962	0.21	-0.4
2,271,550	-		Psyr_1962	0.21	+1.7
2,271,602	+		Psyr_1962	0.24	-1.9
2,271,603	-		Psyr_1962	0.24	-1.5
2,271,603	-		Psyr_1962	0.24	-1.6
2,271,603	-		Psyr_1962	0.24	-0.7
2,271,603	-		Psyr_1962	0.24	-2.9
2,271,665	+		Psyr_1962	0.27	-1.6
2,271,665	+		Psyr_1962	0.27	-1.0
2,271,713	+		Psyr_1962	0.29	+0.4
2,271,713	+		Psyr_1962	0.29	-0.6
2,271,713	+		Psyr_1962	0.29	-0.9
2,271,713	+		Psyr_1962	0.29	+0.2
2,271,714	-		Psyr_1962	0.29	-0.7
2,271,714	-		Psyr_1962	0.29	-0.0
2,271,743	+		Psyr_1962	0.30	-1.0
2,271,779	+		Psyr_1962	0.32	-1.9
2,271,779	+		Psyr_1962	0.32	-0.0
2,271,779	+		Psyr_1962	0.32	-0.0
2,271,779	+		Psyr_1962	0.32	-1.4
2,271,779	+		Psyr_1962	0.32	-1.6
2,271,779	+		Psyr_1962	0.32	-1.4
2,271,779	+		Psyr_1962	0.32	-1.5
2,271,780	-		Psyr_1962	0.32	-1.3
2,271,783	+		Psyr_1962	0.32	-1.4
2,271,783	+		Psyr_1962	0.32	-0.0
2,271,784	-		Psyr_1962	0.32	-0.3
2,271,784	-		Psyr_1962	0.32	-0.0
2,271,828	-		Psyr_1962	0.34	-0.0
2,271,828	-		Psyr_1962	0.34	-0.2
2,271,858	-		Psyr_1962	0.35	-2.4
2,271,858	-		Psyr_1962	0.35	-1.4
2,271,864	-		Psyr_1962	0.35	-1.2
2,271,864	-		Psyr_1962	0.35	-1.0
2,271,922	-		Psyr_1962	0.38	-1.6
2,271,922	-		Psyr_1962	0.38	-0.0
2,271,935	+		Psyr_1962	0.39	-0.4
2,272,053	+		Psyr_1962	0.44	-1.0
2,272,054	-		Psyr_1962	0.44	-2.7
2,272,278	-		Psyr_1962	0.54	+1.4
2,272,278	-		Psyr_1962	0.54	+0.4
2,272,278	-		Psyr_1962	0.54	-1.4
2,272,436	+		Psyr_1962	0.61	-0.0
2,272,562	+		Psyr_1962	0.67	+0.3
2,272,563	-		Psyr_1962	0.67	-0.6
2,272,563	-		Psyr_1962	0.67	-1.6
2,272,796	+		Psyr_1962	0.77	-0.6
2,272,796	+		Psyr_1962	0.77	+1.4
2,272,796	+		Psyr_1962	0.77	+0.4
2,272,797	-		Psyr_1962	0.77	-0.9
2,272,901	+		Psyr_1962	0.82	-0.9
2,273,115	-				-0.4
2,273,414	+				-0.1
2,273,707	+				-1.4
2,273,782	+				-0.9
2,273,782	+				-2.2
2,274,023	-		Psyr_1963	0.24	+0.1
2,274,023	-		Psyr_1963	0.24	+0.2
2,274,025	+		Psyr_1963	0.24	-1.7
2,274,125	-		Psyr_1963	0.30	-1.0
2,274,152	+		Psyr_1963	0.32	-0.6
2,274,153	-		Psyr_1963	0.32	-1.0
2,274,266	-		Psyr_1963	0.39	-0.0