Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1961

Experiment: KB with Berberine 250 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Berberine 250 ug/ml
2,267,439	+				+1.0
2,267,440	-				+0.4
2,267,440	-				-1.0
2,267,977	+				+0.1
2,267,978	-				+0.3
2,268,024	-				-1.5
2,268,203	+				+0.6
2,268,203	+				-1.2
2,268,248	+				-0.4
2,268,248	+				-2.2
2,268,248	+				-0.6
2,268,257	+				-1.1
2,268,257	+				-0.5
2,268,257	+				-0.0
2,268,409	+				-0.3
2,268,436	+				+1.0
2,268,436	+				-1.0
2,268,436	+				+1.5
2,268,436	+				-0.6
2,268,436	+				+0.1
2,268,457	+				+0.4
2,268,490	+				-0.9
2,268,491	-				-0.8
2,268,494	-				-0.4
2,268,494	-				-0.8
2,268,685	+		Psyr_1961	0.11	+0.1
2,268,686	-		Psyr_1961	0.12	-0.6
2,268,937	+		Psyr_1961	0.22	-0.4
2,268,937	+		Psyr_1961	0.22	-0.9
2,268,937	+		Psyr_1961	0.22	-0.3
2,268,938	-		Psyr_1961	0.22	-0.2
2,268,938	-		Psyr_1961	0.22	-1.4
2,269,078	+		Psyr_1961	0.28	+2.5
2,269,115	-		Psyr_1961	0.29	-1.0
2,269,115	-		Psyr_1961	0.29	+1.0
2,269,189	+		Psyr_1961	0.32	-2.4
2,269,190	-		Psyr_1961	0.32	-2.0
2,269,195	+		Psyr_1961	0.33	+0.4
2,269,195	+		Psyr_1961	0.33	+0.5
2,269,196	-		Psyr_1961	0.33	-0.9
2,269,196	-		Psyr_1961	0.33	+0.4
2,269,270	+		Psyr_1961	0.36	-0.9
2,269,285	+		Psyr_1961	0.36	-1.1
2,269,285	+		Psyr_1961	0.36	-1.4
2,269,285	+		Psyr_1961	0.36	-1.6
2,269,488	-		Psyr_1961	0.45	-1.0
2,269,553	+		Psyr_1961	0.47	-0.3
2,269,568	-		Psyr_1961	0.48	-1.7
2,269,798	-		Psyr_1961	0.58	-0.0
2,269,849	+		Psyr_1961	0.60	-0.2
2,269,975	+		Psyr_1961	0.65	-1.7
2,270,188	+		Psyr_1961	0.74	+2.0
2,270,188	+		Psyr_1961	0.74	-0.5
2,270,188	+		Psyr_1961	0.74	-0.6
2,270,188	+		Psyr_1961	0.74	-0.4
2,270,188	+		Psyr_1961	0.74	-0.4
2,270,188	+		Psyr_1961	0.74	-0.0
2,270,188	+		Psyr_1961	0.74	+0.4
2,270,189	-		Psyr_1961	0.74	-1.5
2,270,189	-		Psyr_1961	0.74	-1.0
2,270,189	-		Psyr_1961	0.74	-0.9
2,270,189	-		Psyr_1961	0.74	+0.6
2,270,189	-		Psyr_1961	0.74	+0.5
2,270,401	+		Psyr_1961	0.83	-0.1
2,270,526	+		Psyr_1961	0.88	-2.0
2,271,053	-				+0.1
2,271,066	+				+0.4
2,271,066	+				-1.7
2,271,066	+				+1.0
2,271,067	-				-0.6
2,271,067	-				-0.6
2,271,067	-				-0.2
2,271,098	+				+0.2
2,271,116	+				+0.6
2,271,152	+				-1.4
2,271,153	-				-0.4
2,271,153	-				-0.0
2,271,153	-				-0.9
2,271,153	-				-1.4
2,271,155	+				-0.9
2,271,156	-				-1.4
2,271,156	-				-2.0
2,271,345	-		Psyr_1962	0.12	+1.0
2,271,345	-		Psyr_1962	0.12	-0.7
2,271,422	+		Psyr_1962	0.16	-1.4
2,271,422	+		Psyr_1962	0.16	-2.0
2,271,422	+		Psyr_1962	0.16	-0.0
2,271,423	-		Psyr_1962	0.16	-0.5
2,271,423	-		Psyr_1962	0.16	-0.6
2,271,423	-		Psyr_1962	0.16	-0.0
2,271,423	-		Psyr_1962	0.16	+0.4
2,271,457	+		Psyr_1962	0.17	+0.1
2,271,516	-		Psyr_1962	0.20	+0.4
2,271,549	+		Psyr_1962	0.21	+1.3
2,271,549	+		Psyr_1962	0.21	+0.5
2,271,550	-		Psyr_1962	0.21	-1.6
2,271,550	-		Psyr_1962	0.21	-0.4
2,271,550	-		Psyr_1962	0.21	+1.7
2,271,602	+		Psyr_1962	0.24	-1.9
2,271,603	-		Psyr_1962	0.24	-1.5
2,271,603	-		Psyr_1962	0.24	-1.6
2,271,603	-		Psyr_1962	0.24	-0.7
2,271,603	-		Psyr_1962	0.24	-2.9
2,271,665	+		Psyr_1962	0.27	-1.6
2,271,665	+		Psyr_1962	0.27	-1.0
2,271,713	+		Psyr_1962	0.29	+0.4
2,271,713	+		Psyr_1962	0.29	-0.6
2,271,713	+		Psyr_1962	0.29	-0.9
2,271,713	+		Psyr_1962	0.29	+0.2
2,271,714	-		Psyr_1962	0.29	-0.7
2,271,714	-		Psyr_1962	0.29	-0.0
2,271,743	+		Psyr_1962	0.30	-1.0
2,271,779	+		Psyr_1962	0.32	-1.9
2,271,779	+		Psyr_1962	0.32	-0.0
2,271,779	+		Psyr_1962	0.32	-0.0
2,271,779	+		Psyr_1962	0.32	-1.4
2,271,779	+		Psyr_1962	0.32	-1.6
2,271,779	+		Psyr_1962	0.32	-1.4
2,271,779	+		Psyr_1962	0.32	-1.5
2,271,780	-		Psyr_1962	0.32	-1.3
2,271,783	+		Psyr_1962	0.32	-1.4
2,271,783	+		Psyr_1962	0.32	-0.0
2,271,784	-		Psyr_1962	0.32	-0.3
2,271,784	-		Psyr_1962	0.32	-0.0