Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1841

Experiment: KB with Berberine 250 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Berberine 250 ug/ml
2,120,635	+				+0.9
2,120,655	-				+0.4
2,120,681	+				-0.7
2,120,682	-				+0.1
2,121,076	+		Psyr_1840	0.75	+0.0
2,121,076	+		Psyr_1840	0.75	+0.6
2,121,271	-				-1.1
2,121,271	-				-0.3
2,121,271	-				-0.9
2,121,578	+		Psyr_1841	0.26	-1.4
2,121,578	+		Psyr_1841	0.26	-0.4
2,121,578	+		Psyr_1841	0.26	+1.0
2,121,578	+		Psyr_1841	0.26	-0.1
2,121,579	-		Psyr_1841	0.26	-0.9
2,121,616	+		Psyr_1841	0.29	+0.8
2,121,616	+		Psyr_1841	0.29	-0.2
2,121,616	+		Psyr_1841	0.29	+0.8
2,121,620	+		Psyr_1841	0.29	+0.9
2,121,620	+		Psyr_1841	0.29	+0.9
2,121,620	+		Psyr_1841	0.29	+1.4
2,121,620	+		Psyr_1841	0.29	+2.0
2,121,621	-		Psyr_1841	0.29	-0.1
2,121,621	-		Psyr_1841	0.29	+1.3
2,121,621	-		Psyr_1841	0.29	+0.9
2,121,621	-		Psyr_1841	0.29	-0.3
2,121,640	-		Psyr_1841	0.31	+1.5
2,121,746	+		Psyr_1841	0.40	-1.9
2,121,860	+		Psyr_1841	0.50	-0.1
2,122,045	+		Psyr_1841	0.66	+0.9
2,122,390	+				+0.8
2,122,392	+				+0.9
2,122,393	-				+0.9
2,122,393	-				+0.3
2,122,460	+				+0.7
2,122,460	+				+1.4
2,122,460	+				+0.3
2,122,460	+				+0.3
2,122,460	+				+0.6
2,122,461	-				+1.5
2,122,461	-				+0.2
2,122,461	-				-0.7
2,122,487	+				-0.6
2,122,488	-				-1.9
2,122,496	+				+0.3
2,122,496	+				+0.7
2,122,496	+				-0.8
2,122,506	-				+0.5
2,122,523	+				+0.1
2,122,523	+				-0.7
2,122,524	-				+0.3
2,122,524	-				-0.7
2,122,543	+				+1.2
2,122,722	-		Psyr_1842	0.39	+0.9
2,122,781	+		Psyr_1842	0.49	+0.7
2,122,781	+		Psyr_1842	0.49	+0.5
2,122,781	+		Psyr_1842	0.49	-0.1
2,122,782	-		Psyr_1842	0.49	-1.1
2,122,826	+		Psyr_1842	0.57	+1.9
2,122,826	+		Psyr_1842	0.57	+1.9
2,122,921	+		Psyr_1842	0.72	+1.3
2,122,970	+		Psyr_1842	0.81	+2.8
2,122,970	+		Psyr_1842	0.81	+0.2
2,122,970	+		Psyr_1842	0.81	+0.9
2,122,970	+		Psyr_1842	0.81	-1.3
2,122,970	+		Psyr_1842	0.81	-0.7
2,122,970	+		Psyr_1842	0.81	+0.1
2,122,970	+		Psyr_1842	0.81	+0.6
2,122,970	+		Psyr_1842	0.81	-2.0
2,122,970	+		Psyr_1842	0.81	-0.2
2,122,971	-		Psyr_1842	0.81	+0.8
2,122,971	-		Psyr_1842	0.81	-1.1
2,122,971	-		Psyr_1842	0.81	-0.6
2,122,971	-		Psyr_1842	0.81	+0.7
2,122,971	-		Psyr_1842	0.81	+1.3
2,122,971	-		Psyr_1842	0.81	-1.2
2,122,971	-		Psyr_1842	0.81	-0.7
2,122,971	-		Psyr_1842	0.81	+0.3
2,122,971	-		Psyr_1842	0.81	+1.3
2,122,971	-		Psyr_1842	0.81	-0.1
2,122,971	-		Psyr_1842	0.81	+0.7
2,122,976	+		Psyr_1842	0.82	+1.5
2,122,977	-		Psyr_1842	0.82	-1.9
2,122,977	-		Psyr_1842	0.82	+0.9
2,123,067	-				-0.7
2,123,068	+				+0.0
2,123,068	+				+0.4
2,123,069	-				-0.1
2,123,069	-				+1.1
2,123,069	-				-1.4
2,123,074	+				-0.4
2,123,116	+				+0.5
2,123,116	+				-0.2
2,123,116	+				+0.7
2,123,116	+				+0.6
2,123,134	-				-1.4
2,123,267	+		Psyr_1843	0.39	+1.5
2,123,267	+		Psyr_1843	0.39	-0.1
2,123,398	+		Psyr_1843	0.73	-0.2