Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1786

Experiment: KB with Berberine 250 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Berberine 250 ug/ml
2,036,492	-		Psyr_1785	0.55	+0.1
2,036,592	+		Psyr_1785	0.61	-0.1
2,036,592	+		Psyr_1785	0.61	-0.9
2,036,593	-		Psyr_1785	0.61	+0.1
2,036,629	-		Psyr_1785	0.64	+3.2
2,036,676	+		Psyr_1785	0.67	+1.7
2,036,826	+		Psyr_1785	0.76	-1.4
2,036,827	-		Psyr_1785	0.76	+0.0
2,036,838	+		Psyr_1785	0.77	-0.2
2,036,838	+		Psyr_1785	0.77	+2.7
2,036,838	+		Psyr_1785	0.77	+0.1
2,036,838	+		Psyr_1785	0.77	-1.2
2,036,839	-		Psyr_1785	0.77	+0.5
2,036,874	-		Psyr_1785	0.79	+0.3
2,036,908	-		Psyr_1785	0.82	-0.5
2,036,908	-		Psyr_1785	0.82	+0.9
2,036,943	+		Psyr_1785	0.84	+0.6
2,036,943	+		Psyr_1785	0.84	+0.1
2,036,943	+		Psyr_1785	0.84	-0.4
2,036,944	-		Psyr_1785	0.84	-0.0
2,036,944	-		Psyr_1785	0.84	-1.8
2,036,944	-		Psyr_1785	0.84	+0.7
2,036,965	-		Psyr_1785	0.85	+0.9
2,036,982	+		Psyr_1785	0.86	-2.0
2,036,983	-		Psyr_1785	0.86	-0.2
2,036,983	-		Psyr_1785	0.86	-1.1
2,036,983	-		Psyr_1785	0.86	-0.1
2,037,034	-		Psyr_1785	0.90	-0.3
2,037,096	+				+0.9
2,037,096	+				+0.1
2,037,097	-				+0.9
2,037,097	-				+0.9
2,037,287	+				-0.7
2,037,287	+				+1.2
2,037,288	-				+0.0
2,037,288	-				-0.9
2,037,496	+				+0.5
2,037,593	-		Psyr_1786	0.26	-0.2
2,037,595	+		Psyr_1786	0.27	-0.7
2,037,595	+		Psyr_1786	0.27	+0.9
2,037,733	+		Psyr_1786	0.59	+0.3
2,037,733	+		Psyr_1786	0.59	+0.8
2,037,733	+		Psyr_1786	0.59	+1.3
2,037,733	+		Psyr_1786	0.59	+0.9
2,037,734	-		Psyr_1786	0.59	+0.4
2,037,880	-				-1.4
2,037,882	+				+2.5
2,037,882	+				-1.4
2,037,883	-				-0.8
2,038,314	+		Psyr_1787	0.32	+0.4
2,038,315	-		Psyr_1787	0.32	+0.3
2,038,357	-		Psyr_1787	0.35	+0.0
2,038,357	-		Psyr_1787	0.35	-1.5
2,038,386	+		Psyr_1787	0.37	-2.5
2,038,386	+		Psyr_1787	0.37	+0.3
2,038,387	-		Psyr_1787	0.37	+0.9
2,038,422	+		Psyr_1787	0.40	-0.4
2,038,539	+		Psyr_1787	0.49	+0.2
2,038,540	-		Psyr_1787	0.49	+0.7
2,038,562	+		Psyr_1787	0.51	+0.2
2,038,789	-		Psyr_1787	0.68	-0.1
2,038,800	+		Psyr_1787	0.69	-0.6
2,038,806	+		Psyr_1787	0.70	-0.2
2,038,806	+		Psyr_1787	0.70	+1.0
2,038,806	+		Psyr_1787	0.70	-0.3
2,038,807	-		Psyr_1787	0.70	-0.3
2,038,882	-		Psyr_1787	0.75	+1.7