Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1778

Experiment: KB with Berberine 250 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Berberine 250 ug/ml
2,024,551	+				-0.7
2,024,573	+				+1.2
2,024,574	-				+0.8
2,024,620	+				+0.6
2,024,620	+				+2.4
2,024,620	+				-0.2
2,024,620	+				-0.5
2,024,620	+				-0.4
2,024,620	+				+0.6
2,024,621	-				+0.9
2,024,836	+		Psyr_1777	0.10	+0.2
2,024,899	+		Psyr_1777	0.20	+0.7
2,024,899	+		Psyr_1777	0.20	-1.4
2,025,126	-		Psyr_1777	0.58	-0.5
2,025,127	+		Psyr_1777	0.58	-0.5
2,025,128	-				+2.5
2,025,244	+		Psyr_1777	0.77	+0.9
2,025,244	+		Psyr_1777	0.77	+0.1
2,025,244	+		Psyr_1777	0.77	-0.0
2,025,244	+		Psyr_1777	0.77	+0.1
2,025,247	+		Psyr_1777	0.78	+1.4
2,025,247	+		Psyr_1777	0.78	+0.9
2,025,247	+		Psyr_1777	0.78	-0.5
2,025,247	+		Psyr_1777	0.78	+1.9
2,025,248	-		Psyr_1777	0.78	-0.1
2,025,250	+		Psyr_1777	0.78	+0.3
2,025,251	-		Psyr_1777	0.78	+0.1
2,025,251	-		Psyr_1777	0.78	-0.1
2,025,251	-		Psyr_1777	0.78	-1.7
2,025,251	-		Psyr_1777	0.78	+0.5
2,025,425	-				+0.3
2,025,425	-				+0.5
2,025,486	+				-0.1
2,025,552	+				-1.2
2,025,777	-		Psyr_1778	0.10	+0.9
2,026,132	+		Psyr_1778	0.22	+0.9
2,026,133	-		Psyr_1778	0.22	+0.9
2,026,133	-		Psyr_1778	0.22	-0.1
2,026,486	+		Psyr_1778	0.35	+1.2
2,026,486	+		Psyr_1778	0.35	+1.2
2,026,486	+		Psyr_1778	0.35	-0.2
2,026,486	+		Psyr_1778	0.35	-1.1
2,026,486	+		Psyr_1778	0.35	-0.3
2,026,487	-		Psyr_1778	0.35	-0.4
2,026,487	-		Psyr_1778	0.35	+0.4
2,026,487	-		Psyr_1778	0.35	+0.9
2,026,487	-		Psyr_1778	0.35	+1.4
2,026,487	-		Psyr_1778	0.35	+1.9
2,026,487	-		Psyr_1778	0.35	-0.3
2,026,487	-		Psyr_1778	0.35	+0.3
2,026,487	-		Psyr_1778	0.35	+0.3
2,026,487	-		Psyr_1778	0.35	+0.8
2,026,487	-		Psyr_1778	0.35	+0.2
2,026,487	-		Psyr_1778	0.35	-0.3
2,026,837	+		Psyr_1778	0.47	+0.1
2,026,837	+		Psyr_1778	0.47	+0.6
2,026,840	+		Psyr_1778	0.47	+0.1
2,026,840	+		Psyr_1778	0.47	-0.1
2,026,840	+		Psyr_1778	0.47	+0.5
2,026,840	+		Psyr_1778	0.47	+2.5
2,026,840	+		Psyr_1778	0.47	+1.9
2,026,840	+		Psyr_1778	0.47	-0.7
2,026,841	-		Psyr_1778	0.47	-0.3
2,026,841	-		Psyr_1778	0.47	+0.2
2,026,841	-		Psyr_1778	0.47	+0.6
2,026,841	-		Psyr_1778	0.47	-0.3
2,026,841	-		Psyr_1778	0.47	-0.2
2,026,841	-		Psyr_1778	0.47	+2.5
2,026,841	-		Psyr_1778	0.47	-1.7
2,026,841	-		Psyr_1778	0.47	+0.4
2,027,263	+		Psyr_1778	0.62	-0.2
2,027,263	+		Psyr_1778	0.62	-0.1
2,027,264	-		Psyr_1778	0.62	-0.1
2,027,264	-		Psyr_1778	0.62	+0.1
2,027,308	+		Psyr_1778	0.63	+1.7
2,027,601	+		Psyr_1778	0.74	-0.5
2,027,622	+		Psyr_1778	0.74	+0.8
2,027,622	+		Psyr_1778	0.74	-0.4
2,027,632	+		Psyr_1778	0.75	-0.1
2,027,632	+		Psyr_1778	0.75	+1.2
2,027,633	-		Psyr_1778	0.75	+0.0
2,027,633	-		Psyr_1778	0.75	+1.0
2,027,713	+		Psyr_1778	0.77	-2.0
2,027,713	+		Psyr_1778	0.77	+0.6
2,027,714	-		Psyr_1778	0.77	-0.1
2,027,716	-		Psyr_1778	0.78	+0.9
2,027,795	-		Psyr_1778	0.80	+0.4
2,027,987	-		Psyr_1778	0.87	+0.5
2,028,309	-				-0.1
2,028,419	+				-0.8
2,028,419	+				-0.9
2,028,419	+				+0.5
2,028,420	-				-1.0
2,028,521	-		Psyr_1779	0.34	+0.6
2,028,521	-		Psyr_1779	0.34	-0.1
2,028,521	-		Psyr_1779	0.34	-0.9
2,028,773	+				-0.5
2,028,773	+				-0.5
2,028,773	+				-0.1
2,028,774	-				+0.4
2,028,871	+				+1.7
2,028,871	+				+0.1
2,028,871	+				+1.1
2,028,871	+				+1.6
2,028,871	+				+0.5
2,028,871	+				+0.2
2,028,872	-				-1.9
2,028,872	-				+1.1
2,028,872	-				+1.3
2,028,872	-				-0.5
2,028,872	-				+1.5
2,028,872	-				-0.5
2,028,872	-				-0.4
2,028,886	-				+0.2
2,028,899	-				-0.7
2,028,992	+		Psyr_1780	0.19	+0.5
2,029,112	+		Psyr_1780	0.38	-1.2
2,029,113	-		Psyr_1780	0.38	+0.5
2,029,113	-		Psyr_1780	0.38	-0.1