Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1776

Experiment: KB with Berberine 250 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Berberine 250 ug/ml
2,022,094	+		Psyr_1775	0.28	+0.3
2,022,094	+		Psyr_1775	0.28	-1.4
2,022,095	-		Psyr_1775	0.28	-1.9
2,022,365	-		Psyr_1775	0.61	-1.2
2,022,365	-		Psyr_1775	0.61	+1.8
2,022,365	-		Psyr_1775	0.61	+0.9
2,022,376	+		Psyr_1775	0.63	-0.2
2,022,377	-		Psyr_1775	0.63	+0.2
2,022,468	+		Psyr_1775	0.74	+1.8
2,022,468	+		Psyr_1775	0.74	+0.5
2,022,469	-		Psyr_1775	0.74	-0.8
2,022,529	+		Psyr_1775	0.81	+1.4
2,022,529	+		Psyr_1775	0.81	+0.9
2,022,529	+		Psyr_1775	0.81	+3.2
2,022,530	-		Psyr_1775	0.81	+0.5
2,022,530	-		Psyr_1775	0.81	-0.1
2,022,530	-		Psyr_1775	0.81	-1.7
2,022,699	+				+0.8
2,022,699	+				-0.5
2,022,699	+				+1.5
2,022,700	-				-1.1
2,022,700	-				+0.3
2,022,703	+				+1.9
2,022,703	+				+0.2
2,022,704	-				-0.2
2,022,704	-				-0.7
2,022,704	-				-0.1
2,022,711	+				-0.7
2,022,711	+				+0.8
2,023,353	+		Psyr_1776	0.35	+0.5
2,023,353	+		Psyr_1776	0.35	-0.3
2,023,353	+		Psyr_1776	0.35	-0.2
2,023,353	+		Psyr_1776	0.35	+0.2
2,023,354	-		Psyr_1776	0.35	-0.5
2,023,354	-		Psyr_1776	0.35	+1.2
2,023,354	-		Psyr_1776	0.35	+0.2
2,023,354	-		Psyr_1776	0.35	-0.4
2,023,354	-		Psyr_1776	0.35	+1.8
2,023,354	-		Psyr_1776	0.35	+0.6
2,023,892	-		Psyr_1776	0.68	+0.8
2,023,892	-		Psyr_1776	0.68	+0.5
2,023,939	+		Psyr_1776	0.70	+0.0
2,023,939	+		Psyr_1776	0.70	+1.2
2,023,940	-		Psyr_1776	0.71	+0.5
2,023,940	-		Psyr_1776	0.71	+0.5
2,023,940	-		Psyr_1776	0.71	-0.1
2,023,940	-		Psyr_1776	0.71	-0.2
2,024,074	-		Psyr_1776	0.79	-0.5
2,024,147	-		Psyr_1776	0.83	-1.0
2,024,175	+		Psyr_1776	0.85	-0.2
2,024,176	-		Psyr_1776	0.85	+0.6
2,024,242	+		Psyr_1776	0.89	+1.3
2,024,242	+		Psyr_1776	0.89	+0.5
2,024,242	+		Psyr_1776	0.89	+1.3
2,024,305	+				-0.9
2,024,306	-				-1.7
2,024,415	-				+0.2
2,024,439	+				-0.8
2,024,551	+				-0.7
2,024,573	+				+1.2
2,024,574	-				+0.8
2,024,620	+				+0.6
2,024,620	+				+2.4
2,024,620	+				-0.2
2,024,620	+				-0.5
2,024,620	+				-0.4
2,024,620	+				+0.6
2,024,621	-				+0.9
2,024,836	+		Psyr_1777	0.10	+0.2
2,024,899	+		Psyr_1777	0.20	+0.7
2,024,899	+		Psyr_1777	0.20	-1.4
2,025,126	-		Psyr_1777	0.58	-0.5
2,025,127	+		Psyr_1777	0.58	-0.5
2,025,128	-				+2.5
2,025,244	+		Psyr_1777	0.77	+0.9
2,025,244	+		Psyr_1777	0.77	+0.1
2,025,244	+		Psyr_1777	0.77	-0.0
2,025,244	+		Psyr_1777	0.77	+0.1
2,025,247	+		Psyr_1777	0.78	+1.4
2,025,247	+		Psyr_1777	0.78	+0.9
2,025,247	+		Psyr_1777	0.78	-0.5
2,025,247	+		Psyr_1777	0.78	+1.9
2,025,248	-		Psyr_1777	0.78	-0.1
2,025,250	+		Psyr_1777	0.78	+0.3
2,025,251	-		Psyr_1777	0.78	+0.1
2,025,251	-		Psyr_1777	0.78	-0.1
2,025,251	-		Psyr_1777	0.78	-1.7
2,025,251	-		Psyr_1777	0.78	+0.5