Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1767

Experiment: KB with Berberine 250 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Berberine 250 ug/ml
2,006,072	+				+1.0
2,006,072	+				+1.5
2,006,072	+				+0.3
2,006,072	+				+0.5
2,006,073	-				-1.0
2,006,073	-				+1.5
2,006,073	-				-0.9
2,006,073	-				+0.1
2,006,073	-				+0.8
2,006,098	+		Psyr_1765	0.14	-0.3
2,006,098	+		Psyr_1765	0.14	-0.7
2,006,183	+		Psyr_1765	0.30	+0.1
2,006,275	+		Psyr_1765	0.46	-0.5
2,006,310	-		Psyr_1765	0.53	-1.0
2,006,457	+		Psyr_1765	0.79	+0.0
2,006,458	-		Psyr_1765	0.80	+1.2
2,006,460	-		Psyr_1765	0.80	-0.5
2,006,474	+		Psyr_1765	0.83	+1.6
2,006,474	+		Psyr_1765	0.83	+1.6
2,006,616	+				+0.2
2,006,617	-				-0.6
2,006,617	-				+0.9
2,006,710	-		Psyr_1766	0.44	+0.3
2,006,856	+				+1.2
2,006,856	+				+0.5
2,006,857	-				-0.1
2,006,858	+				-0.1
2,006,858	+				+0.9
2,006,858	+				+0.3
2,006,858	+				+0.1
2,006,859	-				-0.3
2,006,859	-				-0.3
2,006,859	-				-1.5
2,006,859	-				+0.1
2,006,859	-				-1.1
2,006,890	+				+0.1
2,006,890	+				+0.7
2,006,891	-				-0.2
2,006,903	+				+0.4
2,006,903	+				-0.9
2,006,904	-				-0.4
2,006,904	-				-0.9
2,006,904	-				-1.3
2,006,904	-				+0.0
2,006,904	-				+1.1
2,006,904	-				+1.1
2,006,904	-				-1.4
2,006,905	+				-0.9
2,006,905	+				-0.6
2,006,906	-				+0.1
2,006,906	-				-1.3
2,006,933	+				+1.5
2,007,001	+				+0.3
2,007,001	+				+0.2
2,007,001	+				+0.4
2,007,001	+				-0.2
2,007,001	+				-1.7
2,007,001	+				+0.9
2,007,002	-				+0.4
2,007,002	-				-0.4
2,007,002	-				+1.6
2,007,002	-				+0.2
2,007,002	-				+1.4
2,007,002	-				+0.2
2,007,002	-				-0.9
2,007,003	+				-0.3
2,007,004	-				-0.5
2,007,004	-				-2.1
2,007,007	+				+0.3
2,007,007	+				+0.4
2,007,008	-				+0.5
2,007,055	+				+1.7
2,007,055	+				-0.4
2,007,056	-				-1.5
2,007,056	-				-1.6
2,007,067	-				+0.4
2,007,103	+		Psyr_1767	0.13	-0.9
2,007,182	+		Psyr_1767	0.27	-0.1
2,007,182	+		Psyr_1767	0.27	+0.8
2,007,182	+		Psyr_1767	0.27	+0.1
2,007,182	+		Psyr_1767	0.27	-1.0
2,007,182	+		Psyr_1767	0.27	-1.3
2,007,183	-		Psyr_1767	0.27	-0.9
2,007,221	+		Psyr_1767	0.33	-0.7
2,007,221	+		Psyr_1767	0.33	-0.7
2,007,222	-		Psyr_1767	0.34	-0.9
2,007,222	-		Psyr_1767	0.34	+0.5
2,007,222	-		Psyr_1767	0.34	+0.2
2,007,222	-		Psyr_1767	0.34	-0.7
2,007,222	-		Psyr_1767	0.34	-0.7
2,007,222	-		Psyr_1767	0.34	+0.2
2,007,222	-		Psyr_1767	0.34	+0.2
2,007,222	-		Psyr_1767	0.34	+0.5
2,007,222	-		Psyr_1767	0.34	+1.9
2,007,222	-		Psyr_1767	0.34	-0.3
2,007,222	-		Psyr_1767	0.34	-1.4
2,007,222	-		Psyr_1767	0.34	+1.2
2,007,222	-		Psyr_1767	0.34	+0.6
2,007,222	-		Psyr_1767	0.34	-0.7
2,007,222	-		Psyr_1767	0.34	-0.5
2,007,222	-		Psyr_1767	0.34	-2.2
2,007,222	-		Psyr_1767	0.34	-1.2
2,007,226	+		Psyr_1767	0.34	-0.2
2,007,226	+		Psyr_1767	0.34	-0.0
2,007,226	+		Psyr_1767	0.34	+0.3
2,007,226	+		Psyr_1767	0.34	+0.1
2,007,227	-		Psyr_1767	0.34	-1.1
2,007,281	+		Psyr_1767	0.44	-0.9
2,007,282	-		Psyr_1767	0.44	-0.3
2,007,282	-		Psyr_1767	0.44	-0.5
2,007,282	-		Psyr_1767	0.44	-0.6
2,007,442	-		Psyr_1767	0.71	+1.0
2,007,480	-		Psyr_1767	0.78	+0.4
2,007,480	-		Psyr_1767	0.78	-0.2
2,007,480	-		Psyr_1767	0.78	-0.4
2,007,640	+				+0.5
2,007,640	+				-1.1
2,007,650	+				+2.1
2,007,650	+				+2.2
2,007,651	-				+0.6
2,007,655	-				-0.1
2,007,729	-				+0.5
2,007,754	+				+0.9
2,007,754	+				+0.5
2,007,754	+				-0.3
2,007,754	+				+0.3
2,007,754	+				-2.7
2,007,754	+				-2.8
2,007,754	+				+0.4
2,007,755	-				+0.8
2,007,755	-				+0.6
2,007,755	-				+0.4
2,007,755	-				-0.8
2,007,755	-				-1.1
2,007,755	-				+1.4
2,007,755	-				+0.9
2,007,755	-				+0.2
2,007,755	-				-0.9
2,007,755	-				-0.7
2,007,775	+				-0.1
2,007,807	+				-0.7
2,007,807	+				+0.1
2,007,807	+				-0.7
2,007,808	-				-1.1
2,007,808	-				-0.2
2,007,847	-				-0.7
2,007,847	-				+0.7
2,008,029	+				-1.2
2,008,029	+				+0.3
2,008,029	+				+0.5
2,008,029	+				-0.3
2,008,029	+				+1.3
2,008,030	-				+0.2
2,008,065	+				+0.0
2,008,066	-				-0.7
2,008,220	+				+0.5
2,008,240	+				-0.8
2,008,240	+				+0.3