Experiment: KB with Berberine 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1716 and Psyr_1717 overlap by 4 nucleotides Psyr_1717 and Psyr_1718 overlap by 4 nucleotides
Psyr_1716: Psyr_1716 - conserved hypothetical protein, at 1,944,575 to 1,946,233
_1716
Psyr_1717: Psyr_1717 - TPR repeat:von Willebrand factor, type A, at 1,946,230 to 1,947,948
_1717
Psyr_1718: Psyr_1718 - von Willebrand factor, type A, at 1,947,945 to 1,949,003
_1718
Position (kb) 1946
1947
1948 Strain fitness (log2 ratio) -1
0
1 at 1945.360 kb on + strand, within Psyr_1716 at 1945.399 kb on + strand, within Psyr_1716 at 1945.587 kb on - strand, within Psyr_1716 at 1945.595 kb on + strand, within Psyr_1716 at 1945.614 kb on + strand, within Psyr_1716 at 1945.614 kb on + strand, within Psyr_1716 at 1945.761 kb on + strand, within Psyr_1716 at 1945.797 kb on + strand, within Psyr_1716 at 1945.798 kb on - strand, within Psyr_1716 at 1945.798 kb on - strand, within Psyr_1716 at 1945.798 kb on - strand, within Psyr_1716 at 1945.798 kb on - strand, within Psyr_1716 at 1945.798 kb on - strand, within Psyr_1716 at 1945.798 kb on - strand, within Psyr_1716 at 1945.798 kb on - strand, within Psyr_1716 at 1946.213 kb on + strand at 1946.220 kb on + strand at 1946.221 kb on - strand at 1946.221 kb on - strand at 1946.727 kb on - strand, within Psyr_1717 at 1946.792 kb on + strand, within Psyr_1717 at 1946.793 kb on - strand, within Psyr_1717 at 1947.134 kb on + strand, within Psyr_1717 at 1948.093 kb on + strand, within Psyr_1718 at 1948.201 kb on + strand, within Psyr_1718 at 1948.202 kb on - strand, within Psyr_1718 at 1948.439 kb on + strand, within Psyr_1718 at 1948.547 kb on - strand, within Psyr_1718 at 1948.547 kb on - strand, within Psyr_1718
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Berberine 250 ug/ml remove 1,945,360 + Psyr_1716 0.47 -0.9 1,945,399 + Psyr_1716 0.50 +0.3 1,945,587 - Psyr_1716 0.61 -0.1 1,945,595 + Psyr_1716 0.61 -0.7 1,945,614 + Psyr_1716 0.63 +0.1 1,945,614 + Psyr_1716 0.63 -0.1 1,945,761 + Psyr_1716 0.71 -0.7 1,945,797 + Psyr_1716 0.74 +1.7 1,945,798 - Psyr_1716 0.74 +0.9 1,945,798 - Psyr_1716 0.74 -0.1 1,945,798 - Psyr_1716 0.74 +0.1 1,945,798 - Psyr_1716 0.74 +0.9 1,945,798 - Psyr_1716 0.74 -0.8 1,945,798 - Psyr_1716 0.74 +0.3 1,945,798 - Psyr_1716 0.74 +0.4 1,946,213 + +0.6 1,946,220 + +0.2 1,946,221 - -0.1 1,946,221 - +1.3 1,946,727 - Psyr_1717 0.29 -0.7 1,946,792 + Psyr_1717 0.33 -0.1 1,946,793 - Psyr_1717 0.33 -0.9 1,947,134 + Psyr_1717 0.53 -1.0 1,948,093 + Psyr_1718 0.14 -0.1 1,948,201 + Psyr_1718 0.24 -0.1 1,948,202 - Psyr_1718 0.24 +0.5 1,948,439 + Psyr_1718 0.47 +1.3 1,948,547 - Psyr_1718 0.57 +0.2 1,948,547 - Psyr_1718 0.57 -0.1
Or see this region's nucleotide sequence