Experiment: KB with Berberine 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1628 and Psyr_1629 are separated by 160 nucleotides Psyr_1629 and Psyr_1630 are separated by 183 nucleotides Psyr_1630 and Psyr_1631 overlap by 4 nucleotides Psyr_1631 and Psyr_1632 are separated by 136 nucleotides
Psyr_1628: Psyr_1628 - Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, N-terminal, at 1,830,446 to 1,832,893
_1628
Psyr_1629: Psyr_1629 - Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal, at 1,833,054 to 1,833,677
_1629
Psyr_1630: Psyr_1630 - ABC transporter, at 1,833,861 to 1,834,793
_1630
Psyr_1631: Psyr_1631 - ABC-2, at 1,834,790 to 1,835,578
_1631
Psyr_1632: Psyr_1632 - ComEC/Rec2-related protein:DNA internalization-related competence protein ComEC/Rec2, at 1,835,715 to 1,837,931
_1632
Position (kb) 1833
1834
1835 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1832.893 kb on + strand at 1832.893 kb on + strand at 1832.893 kb on + strand at 1832.893 kb on + strand at 1832.893 kb on + strand at 1832.893 kb on + strand at 1832.893 kb on + strand at 1832.893 kb on + strand at 1832.893 kb on + strand at 1832.893 kb on + strand at 1832.894 kb on - strand at 1832.894 kb on - strand at 1832.894 kb on - strand at 1832.894 kb on - strand at 1832.894 kb on - strand at 1832.894 kb on - strand at 1832.894 kb on - strand at 1832.897 kb on + strand at 1832.897 kb on + strand at 1832.897 kb on + strand at 1832.897 kb on + strand at 1832.897 kb on + strand at 1832.897 kb on + strand at 1832.897 kb on + strand at 1832.897 kb on + strand at 1832.897 kb on + strand at 1832.898 kb on - strand at 1832.898 kb on - strand at 1832.898 kb on - strand at 1832.898 kb on - strand at 1832.898 kb on - strand at 1833.010 kb on + strand at 1833.010 kb on + strand at 1833.010 kb on + strand at 1833.025 kb on + strand at 1833.025 kb on + strand at 1833.025 kb on + strand at 1833.025 kb on + strand at 1833.025 kb on + strand at 1833.026 kb on - strand at 1833.026 kb on - strand at 1833.029 kb on + strand at 1833.029 kb on + strand at 1833.030 kb on - strand at 1833.183 kb on + strand, within Psyr_1629 at 1833.301 kb on + strand, within Psyr_1629 at 1833.301 kb on + strand, within Psyr_1629 at 1833.301 kb on + strand, within Psyr_1629 at 1833.301 kb on + strand, within Psyr_1629 at 1833.302 kb on - strand, within Psyr_1629 at 1833.302 kb on - strand, within Psyr_1629 at 1833.303 kb on + strand, within Psyr_1629 at 1833.304 kb on - strand, within Psyr_1629 at 1833.618 kb on + strand at 1833.619 kb on - strand at 1833.731 kb on + strand at 1833.735 kb on + strand at 1833.735 kb on + strand at 1833.736 kb on - strand at 1833.738 kb on + strand at 1833.738 kb on + strand at 1833.739 kb on - strand at 1833.739 kb on - strand at 1833.741 kb on + strand at 1833.742 kb on - strand at 1833.756 kb on + strand at 1833.756 kb on + strand at 1833.757 kb on - strand at 1833.848 kb on + strand at 1833.848 kb on + strand at 1833.861 kb on - strand at 1833.889 kb on + strand at 1833.900 kb on + strand at 1834.174 kb on - strand, within Psyr_1630 at 1834.176 kb on + strand, within Psyr_1630 at 1834.176 kb on + strand, within Psyr_1630 at 1834.177 kb on - strand, within Psyr_1630 at 1834.218 kb on + strand, within Psyr_1630 at 1834.219 kb on - strand, within Psyr_1630 at 1834.372 kb on + strand, within Psyr_1630 at 1834.373 kb on - strand, within Psyr_1630 at 1834.444 kb on - strand, within Psyr_1630 at 1834.444 kb on - strand, within Psyr_1630 at 1834.444 kb on - strand, within Psyr_1630 at 1834.722 kb on - strand at 1834.724 kb on + strand at 1834.725 kb on - strand at 1834.919 kb on + strand, within Psyr_1631 at 1834.919 kb on + strand, within Psyr_1631 at 1834.920 kb on - strand, within Psyr_1631 at 1834.920 kb on - strand, within Psyr_1631 at 1834.976 kb on - strand, within Psyr_1631 at 1834.976 kb on - strand, within Psyr_1631 at 1834.976 kb on - strand, within Psyr_1631 at 1834.979 kb on + strand, within Psyr_1631 at 1834.980 kb on - strand, within Psyr_1631 at 1834.980 kb on - strand, within Psyr_1631 at 1834.980 kb on - strand, within Psyr_1631 at 1834.980 kb on - strand, within Psyr_1631 at 1834.980 kb on - strand, within Psyr_1631 at 1834.980 kb on - strand, within Psyr_1631 at 1834.988 kb on + strand, within Psyr_1631 at 1834.988 kb on + strand, within Psyr_1631 at 1834.988 kb on + strand, within Psyr_1631 at 1834.988 kb on + strand, within Psyr_1631 at 1834.988 kb on + strand, within Psyr_1631 at 1834.988 kb on + strand, within Psyr_1631 at 1834.988 kb on + strand, within Psyr_1631 at 1834.988 kb on + strand, within Psyr_1631 at 1834.989 kb on - strand, within Psyr_1631 at 1834.989 kb on - strand, within Psyr_1631 at 1834.989 kb on - strand, within Psyr_1631 at 1834.989 kb on - strand, within Psyr_1631 at 1834.989 kb on - strand, within Psyr_1631 at 1834.989 kb on - strand, within Psyr_1631 at 1834.989 kb on - strand, within Psyr_1631 at 1835.148 kb on + strand, within Psyr_1631 at 1835.148 kb on + strand, within Psyr_1631 at 1835.148 kb on + strand, within Psyr_1631 at 1835.149 kb on - strand, within Psyr_1631 at 1835.149 kb on - strand, within Psyr_1631 at 1835.149 kb on - strand, within Psyr_1631 at 1835.149 kb on - strand, within Psyr_1631 at 1835.149 kb on - strand, within Psyr_1631 at 1835.214 kb on + strand, within Psyr_1631 at 1835.214 kb on + strand, within Psyr_1631 at 1835.214 kb on + strand, within Psyr_1631 at 1835.214 kb on + strand, within Psyr_1631 at 1835.215 kb on - strand, within Psyr_1631 at 1835.215 kb on - strand, within Psyr_1631 at 1835.215 kb on - strand, within Psyr_1631 at 1835.215 kb on - strand, within Psyr_1631 at 1835.215 kb on - strand, within Psyr_1631 at 1835.215 kb on - strand, within Psyr_1631 at 1835.215 kb on - strand, within Psyr_1631 at 1835.215 kb on - strand, within Psyr_1631 at 1835.315 kb on - strand, within Psyr_1631 at 1835.315 kb on - strand, within Psyr_1631 at 1835.354 kb on + strand, within Psyr_1631 at 1835.354 kb on + strand, within Psyr_1631 at 1835.355 kb on - strand, within Psyr_1631 at 1835.355 kb on - strand, within Psyr_1631 at 1835.355 kb on - strand, within Psyr_1631 at 1835.373 kb on - strand, within Psyr_1631 at 1835.528 kb on + strand at 1835.528 kb on + strand at 1835.528 kb on + strand at 1835.528 kb on + strand at 1835.528 kb on + strand at 1835.529 kb on - strand at 1835.529 kb on - strand at 1835.529 kb on - strand at 1835.529 kb on - strand at 1835.529 kb on - strand at 1835.529 kb on - strand at 1835.529 kb on - strand at 1835.529 kb on - strand at 1835.529 kb on - strand at 1835.531 kb on - strand at 1835.576 kb on + strand at 1835.576 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Berberine 250 ug/ml remove 1,832,893 + -0.1 1,832,893 + +1.1 1,832,893 + -2.6 1,832,893 + -0.5 1,832,893 + +1.5 1,832,893 + -0.7 1,832,893 + -1.5 1,832,893 + -0.3 1,832,893 + -0.3 1,832,893 + -0.5 1,832,894 - +0.1 1,832,894 - -1.1 1,832,894 - +0.0 1,832,894 - -0.6 1,832,894 - -2.8 1,832,894 - -0.5 1,832,894 - -0.7 1,832,897 + +0.6 1,832,897 + -0.4 1,832,897 + -2.3 1,832,897 + +1.1 1,832,897 + -0.1 1,832,897 + -2.3 1,832,897 + -0.8 1,832,897 + +0.7 1,832,897 + -0.4 1,832,898 - -0.5 1,832,898 - -2.1 1,832,898 - -0.3 1,832,898 - +0.4 1,832,898 - -0.7 1,833,010 + +1.2 1,833,010 + +0.9 1,833,010 + -0.4 1,833,025 + +1.9 1,833,025 + -1.3 1,833,025 + +1.5 1,833,025 + -0.1 1,833,025 + +0.9 1,833,026 - -2.4 1,833,026 - -1.0 1,833,029 + -0.6 1,833,029 + -1.4 1,833,030 - +0.2 1,833,183 + Psyr_1629 0.21 -0.4 1,833,301 + Psyr_1629 0.40 -0.5 1,833,301 + Psyr_1629 0.40 -0.4 1,833,301 + Psyr_1629 0.40 -0.5 1,833,301 + Psyr_1629 0.40 +0.2 1,833,302 - Psyr_1629 0.40 +0.6 1,833,302 - Psyr_1629 0.40 -0.9 1,833,303 + Psyr_1629 0.40 -0.3 1,833,304 - Psyr_1629 0.40 -0.5 1,833,618 + -2.4 1,833,619 - -0.5 1,833,731 + +0.4 1,833,735 + -1.9 1,833,735 + -1.6 1,833,736 - -0.7 1,833,738 + -0.1 1,833,738 + -0.1 1,833,739 - +0.7 1,833,739 - -2.5 1,833,741 + -2.1 1,833,742 - -1.1 1,833,756 + -0.6 1,833,756 + +1.0 1,833,757 - +1.9 1,833,848 + -0.1 1,833,848 + -0.7 1,833,861 - +1.2 1,833,889 + +0.3 1,833,900 + -0.3 1,834,174 - Psyr_1630 0.34 -0.9 1,834,176 + Psyr_1630 0.34 +0.9 1,834,176 + Psyr_1630 0.34 -0.7 1,834,177 - Psyr_1630 0.34 -0.5 1,834,218 + Psyr_1630 0.38 -1.4 1,834,219 - Psyr_1630 0.38 -0.7 1,834,372 + Psyr_1630 0.55 -1.2 1,834,373 - Psyr_1630 0.55 -1.0 1,834,444 - Psyr_1630 0.62 -0.8 1,834,444 - Psyr_1630 0.62 +0.1 1,834,444 - Psyr_1630 0.62 -2.8 1,834,722 - +1.2 1,834,724 + -0.3 1,834,725 - -0.4 1,834,919 + Psyr_1631 0.16 +0.3 1,834,919 + Psyr_1631 0.16 -0.3 1,834,920 - Psyr_1631 0.16 +0.5 1,834,920 - Psyr_1631 0.16 +0.0 1,834,976 - Psyr_1631 0.24 +1.7 1,834,976 - Psyr_1631 0.24 -0.1 1,834,976 - Psyr_1631 0.24 -0.8 1,834,979 + Psyr_1631 0.24 +0.4 1,834,980 - Psyr_1631 0.24 -0.9 1,834,980 - Psyr_1631 0.24 +0.3 1,834,980 - Psyr_1631 0.24 -1.0 1,834,980 - Psyr_1631 0.24 -1.1 1,834,980 - Psyr_1631 0.24 -1.9 1,834,980 - Psyr_1631 0.24 +0.9 1,834,988 + Psyr_1631 0.25 -0.4 1,834,988 + Psyr_1631 0.25 +0.5 1,834,988 + Psyr_1631 0.25 -0.7 1,834,988 + Psyr_1631 0.25 -0.4 1,834,988 + Psyr_1631 0.25 +2.5 1,834,988 + Psyr_1631 0.25 -0.8 1,834,988 + Psyr_1631 0.25 +0.5 1,834,988 + Psyr_1631 0.25 -0.4 1,834,989 - Psyr_1631 0.25 -2.7 1,834,989 - Psyr_1631 0.25 -1.3 1,834,989 - Psyr_1631 0.25 +0.2 1,834,989 - Psyr_1631 0.25 -0.4 1,834,989 - Psyr_1631 0.25 +0.9 1,834,989 - Psyr_1631 0.25 +0.1 1,834,989 - Psyr_1631 0.25 -0.1 1,835,148 + Psyr_1631 0.45 -2.1 1,835,148 + Psyr_1631 0.45 -0.4 1,835,148 + Psyr_1631 0.45 -0.9 1,835,149 - Psyr_1631 0.46 +0.5 1,835,149 - Psyr_1631 0.46 +0.2 1,835,149 - Psyr_1631 0.46 -1.9 1,835,149 - Psyr_1631 0.46 +0.9 1,835,149 - Psyr_1631 0.46 +0.9 1,835,214 + Psyr_1631 0.54 +0.0 1,835,214 + Psyr_1631 0.54 -1.3 1,835,214 + Psyr_1631 0.54 -0.9 1,835,214 + Psyr_1631 0.54 -1.9 1,835,215 - Psyr_1631 0.54 +0.9 1,835,215 - Psyr_1631 0.54 +0.6 1,835,215 - Psyr_1631 0.54 +0.3 1,835,215 - Psyr_1631 0.54 +1.7 1,835,215 - Psyr_1631 0.54 -1.1 1,835,215 - Psyr_1631 0.54 -0.7 1,835,215 - Psyr_1631 0.54 +0.9 1,835,215 - Psyr_1631 0.54 -0.3 1,835,315 - Psyr_1631 0.67 -0.1 1,835,315 - Psyr_1631 0.67 -1.6 1,835,354 + Psyr_1631 0.71 -0.1 1,835,354 + Psyr_1631 0.71 -0.0 1,835,355 - Psyr_1631 0.72 -0.7 1,835,355 - Psyr_1631 0.72 -1.6 1,835,355 - Psyr_1631 0.72 +1.3 1,835,373 - Psyr_1631 0.74 +1.5 1,835,528 + +1.3 1,835,528 + -1.1 1,835,528 + +0.3 1,835,528 + +0.2 1,835,528 + +0.9 1,835,529 - -0.5 1,835,529 - -0.1 1,835,529 - -1.1 1,835,529 - -0.2 1,835,529 - -1.4 1,835,529 - -1.1 1,835,529 - -0.7 1,835,529 - +0.7 1,835,529 - +0.2 1,835,531 - +0.4 1,835,576 + -1.0 1,835,576 + +1.5
Or see this region's nucleotide sequence