Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1604

Experiment: KB with Berberine 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1602 and Psyr_1603 are separated by 1 nucleotidesPsyr_1603 and Psyr_1604 overlap by 14 nucleotidesPsyr_1604 and Psyr_1605 overlap by 4 nucleotidesPsyr_1605 and Psyr_1606 are separated by 78 nucleotides Psyr_1602: Psyr_1602 - ABC transporter, at 1,801,574 to 1,802,563 _1602 Psyr_1603: Psyr_1603 - Binding-protein-dependent transport systems inner membrane component, at 1,802,565 to 1,803,362 _1603 Psyr_1604: Psyr_1604 - Binding-protein-dependent transport systems inner membrane component, at 1,803,349 to 1,804,191 _1604 Psyr_1605: Psyr_1605 - conserved hypothetical protein, at 1,804,188 to 1,804,994 _1605 Psyr_1606: Psyr_1606 - ABC transporter, periplasmic substrate-binding protein, at 1,805,073 to 1,806,140 _1606 Position (kb) 1803 1804 1805Strain fitness (log2 ratio) -2 -1 0 1 2at 1802.526 kb on + strandat 1802.526 kb on + strandat 1802.627 kb on - strandat 1802.683 kb on + strand, within Psyr_1603at 1802.684 kb on - strand, within Psyr_1603at 1802.684 kb on - strand, within Psyr_1603at 1802.684 kb on - strand, within Psyr_1603at 1802.701 kb on + strand, within Psyr_1603at 1802.731 kb on - strand, within Psyr_1603at 1802.905 kb on + strand, within Psyr_1603at 1802.906 kb on - strand, within Psyr_1603at 1802.932 kb on + strand, within Psyr_1603at 1802.932 kb on + strand, within Psyr_1603at 1802.933 kb on - strand, within Psyr_1603at 1802.986 kb on + strand, within Psyr_1603at 1802.987 kb on - strand, within Psyr_1603at 1803.079 kb on + strand, within Psyr_1603at 1803.079 kb on + strand, within Psyr_1603at 1803.079 kb on + strand, within Psyr_1603at 1803.080 kb on - strand, within Psyr_1603at 1803.080 kb on - strand, within Psyr_1603at 1803.080 kb on - strand, within Psyr_1603at 1803.080 kb on - strand, within Psyr_1603at 1803.080 kb on - strand, within Psyr_1603at 1803.082 kb on + strand, within Psyr_1603at 1803.082 kb on + strand, within Psyr_1603at 1803.082 kb on + strand, within Psyr_1603at 1803.083 kb on - strand, within Psyr_1603at 1803.202 kb on + strand, within Psyr_1603at 1803.203 kb on - strand, within Psyr_1603at 1803.203 kb on - strand, within Psyr_1603at 1803.263 kb on - strand, within Psyr_1603at 1803.263 kb on - strand, within Psyr_1603at 1803.328 kb on + strandat 1803.329 kb on - strandat 1803.329 kb on - strandat 1803.502 kb on + strand, within Psyr_1604at 1803.502 kb on + strand, within Psyr_1604at 1803.502 kb on + strand, within Psyr_1604at 1803.503 kb on - strand, within Psyr_1604at 1803.503 kb on - strand, within Psyr_1604at 1803.503 kb on - strand, within Psyr_1604at 1803.503 kb on - strand, within Psyr_1604at 1803.530 kb on + strand, within Psyr_1604at 1803.542 kb on + strand, within Psyr_1604at 1803.542 kb on + strand, within Psyr_1604at 1803.543 kb on - strand, within Psyr_1604at 1803.617 kb on + strand, within Psyr_1604at 1803.618 kb on - strand, within Psyr_1604at 1803.618 kb on - strand, within Psyr_1604at 1803.731 kb on + strand, within Psyr_1604at 1803.731 kb on + strand, within Psyr_1604at 1803.731 kb on + strand, within Psyr_1604at 1803.731 kb on + strand, within Psyr_1604at 1803.731 kb on + strand, within Psyr_1604at 1803.732 kb on - strand, within Psyr_1604at 1803.732 kb on - strand, within Psyr_1604at 1803.732 kb on - strand, within Psyr_1604at 1803.735 kb on + strand, within Psyr_1604at 1803.735 kb on + strand, within Psyr_1604at 1803.735 kb on + strand, within Psyr_1604at 1803.736 kb on - strand, within Psyr_1604at 1803.736 kb on - strand, within Psyr_1604at 1803.736 kb on - strand, within Psyr_1604at 1803.736 kb on - strand, within Psyr_1604at 1803.737 kb on + strand, within Psyr_1604at 1803.737 kb on + strand, within Psyr_1604at 1803.737 kb on + strand, within Psyr_1604at 1803.737 kb on + strand, within Psyr_1604at 1803.738 kb on - strand, within Psyr_1604at 1803.764 kb on + strand, within Psyr_1604at 1803.765 kb on - strand, within Psyr_1604at 1803.938 kb on + strand, within Psyr_1604at 1804.002 kb on - strand, within Psyr_1604at 1804.002 kb on - strand, within Psyr_1604at 1804.429 kb on + strand, within Psyr_1605at 1804.429 kb on + strand, within Psyr_1605at 1804.429 kb on + strand, within Psyr_1605at 1804.429 kb on + strand, within Psyr_1605at 1804.430 kb on - strand, within Psyr_1605at 1804.430 kb on - strand, within Psyr_1605at 1804.430 kb on - strand, within Psyr_1605at 1804.430 kb on - strand, within Psyr_1605at 1804.430 kb on - strand, within Psyr_1605at 1804.613 kb on - strand, within Psyr_1605at 1804.613 kb on - strand, within Psyr_1605at 1804.690 kb on + strand, within Psyr_1605at 1804.690 kb on + strand, within Psyr_1605at 1804.690 kb on + strand, within Psyr_1605at 1804.691 kb on - strand, within Psyr_1605at 1804.691 kb on - strand, within Psyr_1605at 1804.691 kb on - strand, within Psyr_1605at 1804.691 kb on - strand, within Psyr_1605at 1804.691 kb on - strand, within Psyr_1605at 1804.691 kb on - strand, within Psyr_1605at 1804.711 kb on + strand, within Psyr_1605at 1804.711 kb on + strand, within Psyr_1605at 1804.712 kb on - strand, within Psyr_1605at 1804.750 kb on + strand, within Psyr_1605at 1804.750 kb on + strand, within Psyr_1605at 1804.751 kb on - strand, within Psyr_1605at 1804.751 kb on - strand, within Psyr_1605at 1804.833 kb on + strand, within Psyr_1605at 1804.833 kb on + strand, within Psyr_1605at 1804.834 kb on - strand, within Psyr_1605at 1804.834 kb on - strand, within Psyr_1605at 1804.886 kb on - strand, within Psyr_1605at 1804.952 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Berberine 250 ug/ml
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1,802,526 + -0.9
1,802,526 + -0.7
1,802,627 - -1.4
1,802,683 + Psyr_1603 0.15 -0.1
1,802,684 - Psyr_1603 0.15 -1.3
1,802,684 - Psyr_1603 0.15 -0.9
1,802,684 - Psyr_1603 0.15 -0.8
1,802,701 + Psyr_1603 0.17 -0.2
1,802,731 - Psyr_1603 0.21 +0.1
1,802,905 + Psyr_1603 0.43 +0.3
1,802,906 - Psyr_1603 0.43 +0.4
1,802,932 + Psyr_1603 0.46 +0.1
1,802,932 + Psyr_1603 0.46 -0.6
1,802,933 - Psyr_1603 0.46 -0.2
1,802,986 + Psyr_1603 0.53 -1.4
1,802,987 - Psyr_1603 0.53 -0.9
1,803,079 + Psyr_1603 0.64 -0.1
1,803,079 + Psyr_1603 0.64 +1.1
1,803,079 + Psyr_1603 0.64 -0.4
1,803,080 - Psyr_1603 0.65 -0.4
1,803,080 - Psyr_1603 0.65 +1.9
1,803,080 - Psyr_1603 0.65 -1.4
1,803,080 - Psyr_1603 0.65 -1.4
1,803,080 - Psyr_1603 0.65 +0.0
1,803,082 + Psyr_1603 0.65 +0.5
1,803,082 + Psyr_1603 0.65 -0.8
1,803,082 + Psyr_1603 0.65 -1.3
1,803,083 - Psyr_1603 0.65 -0.2
1,803,202 + Psyr_1603 0.80 -0.7
1,803,203 - Psyr_1603 0.80 +0.2
1,803,203 - Psyr_1603 0.80 -0.4
1,803,263 - Psyr_1603 0.87 -1.2
1,803,263 - Psyr_1603 0.87 -0.5
1,803,328 + -0.3
1,803,329 - +0.9
1,803,329 - +0.6
1,803,502 + Psyr_1604 0.18 -1.2
1,803,502 + Psyr_1604 0.18 -0.2
1,803,502 + Psyr_1604 0.18 -2.1
1,803,503 - Psyr_1604 0.18 -1.2
1,803,503 - Psyr_1604 0.18 +0.4
1,803,503 - Psyr_1604 0.18 -0.9
1,803,503 - Psyr_1604 0.18 -0.1
1,803,530 + Psyr_1604 0.21 +0.6
1,803,542 + Psyr_1604 0.23 -1.9
1,803,542 + Psyr_1604 0.23 +0.9
1,803,543 - Psyr_1604 0.23 -1.3
1,803,617 + Psyr_1604 0.32 -0.1
1,803,618 - Psyr_1604 0.32 +1.6
1,803,618 - Psyr_1604 0.32 -0.2
1,803,731 + Psyr_1604 0.45 +0.5
1,803,731 + Psyr_1604 0.45 +0.1
1,803,731 + Psyr_1604 0.45 -0.5
1,803,731 + Psyr_1604 0.45 +1.9
1,803,731 + Psyr_1604 0.45 -0.7
1,803,732 - Psyr_1604 0.45 +0.3
1,803,732 - Psyr_1604 0.45 +0.9
1,803,732 - Psyr_1604 0.45 -0.3
1,803,735 + Psyr_1604 0.46 -0.9
1,803,735 + Psyr_1604 0.46 -0.8
1,803,735 + Psyr_1604 0.46 -0.4
1,803,736 - Psyr_1604 0.46 +0.5
1,803,736 - Psyr_1604 0.46 -0.5
1,803,736 - Psyr_1604 0.46 -0.4
1,803,736 - Psyr_1604 0.46 -1.1
1,803,737 + Psyr_1604 0.46 -0.1
1,803,737 + Psyr_1604 0.46 +0.7
1,803,737 + Psyr_1604 0.46 -1.0
1,803,737 + Psyr_1604 0.46 -0.7
1,803,738 - Psyr_1604 0.46 +1.2
1,803,764 + Psyr_1604 0.49 -0.0
1,803,765 - Psyr_1604 0.49 -0.8
1,803,938 + Psyr_1604 0.70 +1.2
1,804,002 - Psyr_1604 0.77 -0.2
1,804,002 - Psyr_1604 0.77 -0.1
1,804,429 + Psyr_1605 0.30 -0.6
1,804,429 + Psyr_1605 0.30 -1.8
1,804,429 + Psyr_1605 0.30 +0.3
1,804,429 + Psyr_1605 0.30 +0.7
1,804,430 - Psyr_1605 0.30 -1.4
1,804,430 - Psyr_1605 0.30 -0.1
1,804,430 - Psyr_1605 0.30 +0.9
1,804,430 - Psyr_1605 0.30 +0.6
1,804,430 - Psyr_1605 0.30 -0.7
1,804,613 - Psyr_1605 0.53 -1.1
1,804,613 - Psyr_1605 0.53 -1.1
1,804,690 + Psyr_1605 0.62 -0.6
1,804,690 + Psyr_1605 0.62 -1.0
1,804,690 + Psyr_1605 0.62 +0.6
1,804,691 - Psyr_1605 0.62 +0.2
1,804,691 - Psyr_1605 0.62 +0.2
1,804,691 - Psyr_1605 0.62 -1.0
1,804,691 - Psyr_1605 0.62 +0.5
1,804,691 - Psyr_1605 0.62 -0.8
1,804,691 - Psyr_1605 0.62 -0.5
1,804,711 + Psyr_1605 0.65 -0.8
1,804,711 + Psyr_1605 0.65 -0.8
1,804,712 - Psyr_1605 0.65 -0.8
1,804,750 + Psyr_1605 0.70 -2.6
1,804,750 + Psyr_1605 0.70 -0.7
1,804,751 - Psyr_1605 0.70 -1.9
1,804,751 - Psyr_1605 0.70 +0.0
1,804,833 + Psyr_1605 0.80 +0.7
1,804,833 + Psyr_1605 0.80 +1.2
1,804,834 - Psyr_1605 0.80 +0.5
1,804,834 - Psyr_1605 0.80 +0.6
1,804,886 - Psyr_1605 0.86 +0.9
1,804,952 - -1.0

Or see this region's nucleotide sequence