Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1490

Experiment: KB with Berberine 250 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Berberine 250 ug/ml
1,676,693	+				+1.6
1,676,693	+				-1.6
1,676,694	-				+1.4
1,676,694	-				-1.5
1,676,694	-				-0.8
1,676,705	+				+0.3
1,676,751	+				+0.5
1,676,751	+				+0.8
1,676,751	+				-2.8
1,676,751	+				-0.4
1,676,751	+				+0.3
1,676,751	+				+0.3
1,676,751	+				+0.6
1,676,751	+				-0.1
1,676,752	-				-0.2
1,676,752	-				+0.6
1,676,752	-				+1.1
1,676,752	-				+0.2
1,676,752	-				-1.8
1,676,752	-				-2.8
1,676,752	-				+0.5
1,676,752	-				+0.1
1,676,752	-				-1.0
1,676,752	-				-0.4
1,676,752	-				+0.6
1,676,752	-				+1.9
1,676,752	-				+0.2
1,676,771	+				-0.1
1,676,771	+				-1.5
1,676,771	+				-0.3
1,676,771	+				-0.8
1,676,771	+				+0.2
1,676,771	+				+1.4
1,676,771	+				+0.3
1,676,771	+				+0.2
1,676,771	+				-0.2
1,676,771	+				+0.8
1,676,771	+				+1.1
1,676,771	+				+1.0
1,676,772	-				-0.8
1,676,772	-				-1.6
1,676,772	-				+1.0
1,676,772	-				-0.3
1,676,851	+				+0.2
1,676,851	+				+0.3
1,676,869	-				-0.9
1,676,937	+				-0.4
1,676,937	+				+0.8
1,676,938	-				-0.2
1,676,954	+				+1.6
1,676,954	+				+0.1
1,676,955	-				-0.2
1,676,979	-				-0.3
1,676,979	-				-1.2
1,677,042	+				+0.5
1,677,135	-				-0.0
1,677,135	-				-0.8
1,677,135	-				+0.4
1,677,154	+				+1.2
1,677,247	+				+0.2
1,677,247	+				-0.2
1,677,247	+				-0.2
1,677,248	-				+0.7
1,677,261	+				+1.4
1,677,262	-				+1.5
1,677,286	-				+1.1
1,677,286	-				+0.8
1,677,288	+				-0.5
1,677,288	+				-1.5
1,677,289	-				+0.6
1,677,289	-				-1.5
1,677,289	-				-0.8
1,677,289	-				-0.4
1,677,317	-		Psyr_1489	0.11	+0.2
1,677,317	-		Psyr_1489	0.11	+0.4
1,677,317	-		Psyr_1489	0.11	+2.1
1,677,344	-		Psyr_1489	0.20	+0.8
1,677,369	+		Psyr_1489	0.29	-0.5
1,677,450	+		Psyr_1489	0.58	+1.5
1,677,450	+		Psyr_1489	0.58	-0.6
1,677,451	-		Psyr_1489	0.59	+0.3
1,677,480	+		Psyr_1489	0.69	+0.7
1,677,481	-		Psyr_1489	0.70	-0.5
1,677,481	-		Psyr_1489	0.70	+0.5
1,677,481	-		Psyr_1489	0.70	+1.2
1,677,481	-		Psyr_1489	0.70	+0.2
1,677,571	+				-0.5
1,677,571	+				+0.8
1,677,572	-				+2.4
1,677,572	-				+0.2
1,677,572	-				+0.1
1,677,619	+				+0.4
1,677,619	+				-0.3
1,677,619	+				-0.4
1,677,620	-				-0.4
1,677,620	-				+0.8
1,677,620	-				+1.4
1,677,620	-				+0.3
1,677,620	-				+0.5
1,677,644	-				+0.5
1,677,672	+				+0.5
1,678,074	+				+0.4
1,678,075	-				-0.4
1,678,075	-				+0.4
1,678,075	-				-0.1
1,678,075	-				-0.6
1,678,116	+				+0.5
1,678,116	+				+0.5
1,678,116	+				+1.6
1,678,116	+				+0.2
1,678,116	+				+0.1
1,678,116	+				-0.5
1,678,116	+				+1.0
1,678,117	-				+1.0
1,678,117	-				+0.5
1,678,117	-				-1.0
1,678,117	-				+1.2
1,678,117	-				+0.8
1,678,117	-				+0.3
1,678,119	-				+0.2
1,678,119	-				-0.4
1,678,143	+				-0.0
1,678,143	+				+0.5
1,678,143	+				+0.9
1,678,143	+				-0.8
1,678,183	+				+0.0
1,678,183	+				-0.2
1,678,183	+				+2.6
1,678,183	+				+0.2
1,678,183	+				+0.5
1,678,184	-				+1.3
1,678,184	-				+0.4
1,678,184	-				-1.0
1,678,184	-				-0.5
1,678,184	-				-0.8
1,678,184	-				-0.4
1,678,191	+				+0.1
1,678,192	-				-0.9
1,678,192	-				+0.7
1,678,196	+				-0.5
1,678,196	+				-3.1
1,678,197	-				+0.2
1,678,197	-				-0.3
1,678,231	-				+0.0
1,678,404	+		Psyr_1491	0.13	-0.1
1,678,404	+		Psyr_1491	0.13	-0.1
1,678,404	+		Psyr_1491	0.13	+0.5
1,678,404	+		Psyr_1491	0.13	+0.8
1,678,404	+		Psyr_1491	0.13	-0.0
1,678,404	+		Psyr_1491	0.13	-1.1
1,678,405	-		Psyr_1491	0.13	-0.8
1,678,405	-		Psyr_1491	0.13	+1.3
1,678,405	-		Psyr_1491	0.13	+1.8
1,678,405	-		Psyr_1491	0.13	+0.8
1,678,405	-		Psyr_1491	0.13	+1.0
1,678,405	-		Psyr_1491	0.13	+0.2
1,678,405	-		Psyr_1491	0.13	+1.7
1,678,405	-		Psyr_1491	0.13	+0.5
1,678,405	-		Psyr_1491	0.13	-0.5
1,678,405	-		Psyr_1491	0.13	+0.6
1,678,405	-		Psyr_1491	0.13	+0.5
1,678,405	-		Psyr_1491	0.13	-0.7
1,678,405	-		Psyr_1491	0.13	-0.4
1,678,788	+		Psyr_1491	0.37	+0.4
1,678,788	+		Psyr_1491	0.37	+0.2
1,678,789	-		Psyr_1491	0.37	-0.2
1,678,789	-		Psyr_1491	0.37	+0.6
1,678,789	-		Psyr_1491	0.37	+0.3
1,678,789	-		Psyr_1491	0.37	-0.0
1,678,802	-		Psyr_1491	0.37	-2.2
1,678,824	+		Psyr_1491	0.39	+0.8
1,678,826	+		Psyr_1491	0.39	-2.0
1,678,827	-		Psyr_1491	0.39	+0.2
1,678,827	-		Psyr_1491	0.39	-0.5
1,678,876	+		Psyr_1491	0.42	+0.1
1,678,876	+		Psyr_1491	0.42	-0.8
1,678,877	-		Psyr_1491	0.42	-0.8
1,678,877	-		Psyr_1491	0.42	+0.2
1,678,927	+		Psyr_1491	0.45	+1.0
1,678,927	+		Psyr_1491	0.45	+1.3
1,678,927	+		Psyr_1491	0.45	-0.4
1,678,927	+		Psyr_1491	0.45	-0.8
1,678,928	-		Psyr_1491	0.45	+1.5
1,678,928	-		Psyr_1491	0.45	+1.0
1,678,928	-		Psyr_1491	0.45	+0.8
1,678,928	-		Psyr_1491	0.45	-1.7
1,678,928	-		Psyr_1491	0.45	-0.6
1,678,928	-		Psyr_1491	0.45	-2.9
1,678,928	-		Psyr_1491	0.45	-2.6