Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1260

Experiment: KB with Berberine 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1259 and Psyr_1260 are separated by 119 nucleotidesPsyr_1260 and Psyr_1261 are separated by 94 nucleotides Psyr_1259: Psyr_1259 - Exodeoxyribonuclease VII large subunit, at 1,415,962 to 1,417,353 _1259 Psyr_1260: Psyr_1260 - conserved hypothetical protein, at 1,417,473 to 1,418,021 _1260 Psyr_1261: Psyr_1261 - inosine-5'-monophosphate dehydrogenase, at 1,418,116 to 1,419,585 _1261 Position (kb) 1417 1418 1419Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1417.040 kb on + strand, within Psyr_1259at 1417.181 kb on + strand, within Psyr_1259at 1417.181 kb on + strand, within Psyr_1259at 1417.181 kb on + strand, within Psyr_1259at 1417.181 kb on + strand, within Psyr_1259at 1417.181 kb on + strand, within Psyr_1259at 1417.181 kb on + strand, within Psyr_1259at 1417.181 kb on + strand, within Psyr_1259at 1417.181 kb on + strand, within Psyr_1259at 1417.182 kb on - strand, within Psyr_1259at 1417.182 kb on - strand, within Psyr_1259at 1417.182 kb on - strand, within Psyr_1259at 1417.182 kb on - strand, within Psyr_1259at 1417.182 kb on - strand, within Psyr_1259at 1417.182 kb on - strand, within Psyr_1259at 1417.182 kb on - strand, within Psyr_1259at 1417.182 kb on - strand, within Psyr_1259at 1417.182 kb on - strand, within Psyr_1259at 1417.182 kb on - strand, within Psyr_1259at 1417.293 kb on + strandat 1417.294 kb on - strandat 1417.354 kb on - strandat 1417.354 kb on - strandat 1417.354 kb on - strandat 1417.354 kb on - strandat 1417.434 kb on + strandat 1417.458 kb on - strandat 1417.605 kb on + strand, within Psyr_1260at 1417.605 kb on + strand, within Psyr_1260at 1417.605 kb on + strand, within Psyr_1260at 1417.605 kb on + strand, within Psyr_1260at 1417.605 kb on + strand, within Psyr_1260at 1417.605 kb on + strand, within Psyr_1260at 1417.605 kb on + strand, within Psyr_1260at 1417.606 kb on - strand, within Psyr_1260at 1417.606 kb on - strand, within Psyr_1260at 1417.606 kb on - strand, within Psyr_1260at 1417.606 kb on - strand, within Psyr_1260at 1417.606 kb on - strand, within Psyr_1260at 1417.606 kb on - strand, within Psyr_1260at 1417.607 kb on + strand, within Psyr_1260at 1417.608 kb on - strand, within Psyr_1260at 1417.722 kb on + strand, within Psyr_1260at 1417.722 kb on + strand, within Psyr_1260at 1417.722 kb on + strand, within Psyr_1260at 1417.722 kb on + strand, within Psyr_1260at 1417.722 kb on + strand, within Psyr_1260at 1417.722 kb on + strand, within Psyr_1260at 1417.722 kb on + strand, within Psyr_1260at 1417.722 kb on + strand, within Psyr_1260at 1417.722 kb on + strand, within Psyr_1260at 1417.722 kb on + strand, within Psyr_1260at 1417.722 kb on + strand, within Psyr_1260at 1417.722 kb on + strand, within Psyr_1260at 1417.722 kb on + strand, within Psyr_1260at 1417.722 kb on + strand, within Psyr_1260at 1417.722 kb on + strand, within Psyr_1260at 1417.723 kb on - strand, within Psyr_1260at 1417.723 kb on - strand, within Psyr_1260at 1417.723 kb on - strand, within Psyr_1260at 1417.723 kb on - strand, within Psyr_1260at 1417.723 kb on - strand, within Psyr_1260at 1417.723 kb on - strand, within Psyr_1260at 1417.723 kb on - strand, within Psyr_1260at 1417.723 kb on - strand, within Psyr_1260at 1417.723 kb on - strand, within Psyr_1260at 1417.723 kb on - strand, within Psyr_1260at 1417.723 kb on - strand, within Psyr_1260at 1417.723 kb on - strand, within Psyr_1260at 1417.723 kb on - strand, within Psyr_1260at 1417.723 kb on - strand, within Psyr_1260at 1417.723 kb on - strand, within Psyr_1260at 1417.723 kb on - strand, within Psyr_1260at 1417.928 kb on + strand, within Psyr_1260at 1418.017 kb on + strandat 1418.017 kb on + strandat 1418.019 kb on + strandat 1418.020 kb on - strandat 1418.035 kb on + strandat 1418.036 kb on - strandat 1418.047 kb on + strandat 1418.047 kb on + strandat 1418.047 kb on + strandat 1418.047 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Berberine 250 ug/ml
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1,417,040 + Psyr_1259 0.77 +0.5
1,417,181 + Psyr_1259 0.88 -0.7
1,417,181 + Psyr_1259 0.88 +1.2
1,417,181 + Psyr_1259 0.88 +1.2
1,417,181 + Psyr_1259 0.88 -1.6
1,417,181 + Psyr_1259 0.88 +0.5
1,417,181 + Psyr_1259 0.88 -0.9
1,417,181 + Psyr_1259 0.88 -0.3
1,417,181 + Psyr_1259 0.88 +1.0
1,417,182 - Psyr_1259 0.88 +0.1
1,417,182 - Psyr_1259 0.88 +0.5
1,417,182 - Psyr_1259 0.88 -0.9
1,417,182 - Psyr_1259 0.88 -0.3
1,417,182 - Psyr_1259 0.88 +1.0
1,417,182 - Psyr_1259 0.88 +0.4
1,417,182 - Psyr_1259 0.88 +1.7
1,417,182 - Psyr_1259 0.88 -0.6
1,417,182 - Psyr_1259 0.88 +1.4
1,417,182 - Psyr_1259 0.88 -0.5
1,417,293 + +1.0
1,417,294 - -0.3
1,417,354 - +1.4
1,417,354 - +1.0
1,417,354 - -1.0
1,417,354 - +0.2
1,417,434 + -1.4
1,417,458 - +1.0
1,417,605 + Psyr_1260 0.24 +0.1
1,417,605 + Psyr_1260 0.24 -0.2
1,417,605 + Psyr_1260 0.24 -0.2
1,417,605 + Psyr_1260 0.24 +2.0
1,417,605 + Psyr_1260 0.24 -1.0
1,417,605 + Psyr_1260 0.24 -0.3
1,417,605 + Psyr_1260 0.24 +0.8
1,417,606 - Psyr_1260 0.24 +0.6
1,417,606 - Psyr_1260 0.24 -0.6
1,417,606 - Psyr_1260 0.24 -1.3
1,417,606 - Psyr_1260 0.24 -0.4
1,417,606 - Psyr_1260 0.24 -2.1
1,417,606 - Psyr_1260 0.24 -0.2
1,417,607 + Psyr_1260 0.24 +1.0
1,417,608 - Psyr_1260 0.25 +0.6
1,417,722 + Psyr_1260 0.45 -0.8
1,417,722 + Psyr_1260 0.45 -0.0
1,417,722 + Psyr_1260 0.45 +0.2
1,417,722 + Psyr_1260 0.45 -1.6
1,417,722 + Psyr_1260 0.45 -0.4
1,417,722 + Psyr_1260 0.45 +1.0
1,417,722 + Psyr_1260 0.45 +1.0
1,417,722 + Psyr_1260 0.45 -2.1
1,417,722 + Psyr_1260 0.45 -0.2
1,417,722 + Psyr_1260 0.45 -0.0
1,417,722 + Psyr_1260 0.45 -0.8
1,417,722 + Psyr_1260 0.45 -1.2
1,417,722 + Psyr_1260 0.45 +0.0
1,417,722 + Psyr_1260 0.45 -1.8
1,417,722 + Psyr_1260 0.45 +0.0
1,417,723 - Psyr_1260 0.46 -0.4
1,417,723 - Psyr_1260 0.46 +0.4
1,417,723 - Psyr_1260 0.46 +1.4
1,417,723 - Psyr_1260 0.46 -0.0
1,417,723 - Psyr_1260 0.46 -1.0
1,417,723 - Psyr_1260 0.46 +0.7
1,417,723 - Psyr_1260 0.46 +0.8
1,417,723 - Psyr_1260 0.46 -1.7
1,417,723 - Psyr_1260 0.46 -0.8
1,417,723 - Psyr_1260 0.46 +0.7
1,417,723 - Psyr_1260 0.46 -1.4
1,417,723 - Psyr_1260 0.46 -0.6
1,417,723 - Psyr_1260 0.46 -0.5
1,417,723 - Psyr_1260 0.46 -2.9
1,417,723 - Psyr_1260 0.46 -1.8
1,417,723 - Psyr_1260 0.46 -1.7
1,417,928 + Psyr_1260 0.83 +0.6
1,418,017 + -0.1
1,418,017 + +0.5
1,418,019 + -0.2
1,418,020 - -1.0
1,418,035 + +0.6
1,418,036 - -2.7
1,418,047 + -0.0
1,418,047 + +0.2
1,418,047 + +1.0
1,418,047 + +0.6

Or see this region's nucleotide sequence