Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1168

Experiment: KB with Berberine 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1166 and Psyr_1167 are separated by 27 nucleotidesPsyr_1167 and Psyr_1168 overlap by 8 nucleotidesPsyr_1168 and Psyr_1169 are separated by 9 nucleotides Psyr_1166: Psyr_1166 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase, at 1,319,643 to 1,320,659 _1166 Psyr_1167: Psyr_1167 - nucleoside ABC transporter membrane protein, at 1,320,687 to 1,321,607 _1167 Psyr_1168: Psyr_1168 - nucleoside ABC transporter membrane protein, at 1,321,600 to 1,322,709 _1168 Psyr_1169: Psyr_1169 - nucleoside-binding protein, at 1,322,719 to 1,323,828 _1169 Position (kb) 1321 1322 1323Strain fitness (log2 ratio) -2 -1 0 1 2at 1320.751 kb on + strandat 1320.751 kb on + strandat 1320.751 kb on + strandat 1320.751 kb on + strandat 1320.751 kb on + strandat 1320.751 kb on + strandat 1320.752 kb on - strandat 1320.752 kb on - strandat 1320.752 kb on - strandat 1320.775 kb on + strandat 1320.775 kb on + strandat 1320.796 kb on + strand, within Psyr_1167at 1320.796 kb on + strand, within Psyr_1167at 1320.796 kb on + strand, within Psyr_1167at 1320.796 kb on + strand, within Psyr_1167at 1320.796 kb on + strand, within Psyr_1167at 1320.796 kb on + strand, within Psyr_1167at 1320.796 kb on + strand, within Psyr_1167at 1320.797 kb on - strand, within Psyr_1167at 1320.797 kb on - strand, within Psyr_1167at 1320.797 kb on - strand, within Psyr_1167at 1320.797 kb on - strand, within Psyr_1167at 1320.982 kb on + strand, within Psyr_1167at 1320.982 kb on + strand, within Psyr_1167at 1320.982 kb on + strand, within Psyr_1167at 1321.035 kb on + strand, within Psyr_1167at 1321.586 kb on + strandat 1321.587 kb on - strandat 1321.587 kb on - strandat 1321.587 kb on - strandat 1321.587 kb on - strandat 1321.598 kb on + strandat 1322.072 kb on + strand, within Psyr_1168at 1322.072 kb on + strand, within Psyr_1168at 1322.072 kb on + strand, within Psyr_1168at 1322.072 kb on + strand, within Psyr_1168at 1322.072 kb on + strand, within Psyr_1168at 1322.072 kb on + strand, within Psyr_1168at 1322.073 kb on - strand, within Psyr_1168at 1322.073 kb on - strand, within Psyr_1168at 1322.073 kb on - strand, within Psyr_1168at 1322.073 kb on - strand, within Psyr_1168at 1322.073 kb on - strand, within Psyr_1168at 1322.073 kb on - strand, within Psyr_1168at 1322.073 kb on - strand, within Psyr_1168at 1322.073 kb on - strand, within Psyr_1168at 1322.073 kb on - strand, within Psyr_1168at 1322.148 kb on + strand, within Psyr_1168at 1322.148 kb on + strand, within Psyr_1168at 1322.148 kb on + strand, within Psyr_1168at 1322.148 kb on + strand, within Psyr_1168at 1322.148 kb on + strand, within Psyr_1168at 1322.148 kb on + strand, within Psyr_1168at 1322.149 kb on - strand, within Psyr_1168at 1322.149 kb on - strand, within Psyr_1168at 1322.149 kb on - strand, within Psyr_1168at 1322.149 kb on - strand, within Psyr_1168at 1322.149 kb on - strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.247 kb on - strand, within Psyr_1168at 1322.247 kb on - strand, within Psyr_1168at 1322.247 kb on - strand, within Psyr_1168at 1322.247 kb on - strand, within Psyr_1168at 1322.247 kb on - strand, within Psyr_1168at 1322.653 kb on - strandat 1322.653 kb on - strandat 1322.750 kb on + strandat 1322.750 kb on + strandat 1322.750 kb on + strandat 1322.751 kb on - strandat 1322.751 kb on - strandat 1322.925 kb on - strand, within Psyr_1169at 1323.053 kb on + strand, within Psyr_1169at 1323.163 kb on + strand, within Psyr_1169at 1323.163 kb on + strand, within Psyr_1169at 1323.163 kb on + strand, within Psyr_1169at 1323.163 kb on + strand, within Psyr_1169at 1323.164 kb on - strand, within Psyr_1169at 1323.164 kb on - strand, within Psyr_1169at 1323.164 kb on - strand, within Psyr_1169at 1323.386 kb on + strand, within Psyr_1169at 1323.386 kb on + strand, within Psyr_1169at 1323.387 kb on - strand, within Psyr_1169at 1323.404 kb on + strand, within Psyr_1169at 1323.404 kb on + strand, within Psyr_1169at 1323.521 kb on + strand, within Psyr_1169

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Berberine 250 ug/ml
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1,320,751 + -0.6
1,320,751 + -0.5
1,320,751 + -0.0
1,320,751 + +1.6
1,320,751 + -1.8
1,320,751 + +0.5
1,320,752 - +0.8
1,320,752 - +0.6
1,320,752 - +0.8
1,320,775 + -0.6
1,320,775 + +1.0
1,320,796 + Psyr_1167 0.12 +1.0
1,320,796 + Psyr_1167 0.12 -0.2
1,320,796 + Psyr_1167 0.12 +0.6
1,320,796 + Psyr_1167 0.12 +0.3
1,320,796 + Psyr_1167 0.12 -1.0
1,320,796 + Psyr_1167 0.12 +2.3
1,320,796 + Psyr_1167 0.12 -0.0
1,320,797 - Psyr_1167 0.12 +1.0
1,320,797 - Psyr_1167 0.12 -1.5
1,320,797 - Psyr_1167 0.12 -0.5
1,320,797 - Psyr_1167 0.12 +2.0
1,320,982 + Psyr_1167 0.32 +0.5
1,320,982 + Psyr_1167 0.32 -0.0
1,320,982 + Psyr_1167 0.32 -0.3
1,321,035 + Psyr_1167 0.38 +0.7
1,321,586 + +1.4
1,321,587 - -0.6
1,321,587 - -0.8
1,321,587 - -0.0
1,321,587 - -0.5
1,321,598 + +0.1
1,322,072 + Psyr_1168 0.43 +0.8
1,322,072 + Psyr_1168 0.43 +0.3
1,322,072 + Psyr_1168 0.43 +0.6
1,322,072 + Psyr_1168 0.43 +1.0
1,322,072 + Psyr_1168 0.43 +1.0
1,322,072 + Psyr_1168 0.43 -1.0
1,322,073 - Psyr_1168 0.43 +1.0
1,322,073 - Psyr_1168 0.43 +1.0
1,322,073 - Psyr_1168 0.43 +0.8
1,322,073 - Psyr_1168 0.43 +1.5
1,322,073 - Psyr_1168 0.43 -0.5
1,322,073 - Psyr_1168 0.43 +0.5
1,322,073 - Psyr_1168 0.43 +0.5
1,322,073 - Psyr_1168 0.43 +0.0
1,322,073 - Psyr_1168 0.43 -0.4
1,322,148 + Psyr_1168 0.49 +0.5
1,322,148 + Psyr_1168 0.49 -1.0
1,322,148 + Psyr_1168 0.49 +1.7
1,322,148 + Psyr_1168 0.49 -1.0
1,322,148 + Psyr_1168 0.49 +0.8
1,322,148 + Psyr_1168 0.49 +0.6
1,322,149 - Psyr_1168 0.49 +0.5
1,322,149 - Psyr_1168 0.49 -0.3
1,322,149 - Psyr_1168 0.49 +1.0
1,322,149 - Psyr_1168 0.49 +0.9
1,322,149 - Psyr_1168 0.49 +0.4
1,322,150 + Psyr_1168 0.50 -0.3
1,322,150 + Psyr_1168 0.50 -0.5
1,322,150 + Psyr_1168 0.50 -0.0
1,322,150 + Psyr_1168 0.50 +2.3
1,322,150 + Psyr_1168 0.50 +0.1
1,322,150 + Psyr_1168 0.50 +0.2
1,322,150 + Psyr_1168 0.50 -0.2
1,322,150 + Psyr_1168 0.50 +0.6
1,322,150 + Psyr_1168 0.50 -2.2
1,322,150 + Psyr_1168 0.50 -1.0
1,322,150 + Psyr_1168 0.50 -0.1
1,322,150 + Psyr_1168 0.50 +0.8
1,322,150 + Psyr_1168 0.50 -0.0
1,322,150 + Psyr_1168 0.50 -0.8
1,322,150 + Psyr_1168 0.50 -1.8
1,322,150 + Psyr_1168 0.50 +1.0
1,322,151 - Psyr_1168 0.50 +2.3
1,322,151 - Psyr_1168 0.50 +0.2
1,322,151 - Psyr_1168 0.50 +0.7
1,322,151 - Psyr_1168 0.50 +0.3
1,322,151 - Psyr_1168 0.50 -0.3
1,322,151 - Psyr_1168 0.50 +1.2
1,322,151 - Psyr_1168 0.50 -1.5
1,322,151 - Psyr_1168 0.50 +0.4
1,322,151 - Psyr_1168 0.50 -0.8
1,322,151 - Psyr_1168 0.50 -0.6
1,322,151 - Psyr_1168 0.50 -1.2
1,322,151 - Psyr_1168 0.50 -0.2
1,322,247 - Psyr_1168 0.58 -1.7
1,322,247 - Psyr_1168 0.58 +1.6
1,322,247 - Psyr_1168 0.58 -0.0
1,322,247 - Psyr_1168 0.58 +0.2
1,322,247 - Psyr_1168 0.58 -0.8
1,322,653 - +1.8
1,322,653 - +0.7
1,322,750 + +1.5
1,322,750 + -0.1
1,322,750 + -0.0
1,322,751 - -0.6
1,322,751 - +0.6
1,322,925 - Psyr_1169 0.19 +1.2
1,323,053 + Psyr_1169 0.30 -0.3
1,323,163 + Psyr_1169 0.40 +1.3
1,323,163 + Psyr_1169 0.40 +0.1
1,323,163 + Psyr_1169 0.40 +0.7
1,323,163 + Psyr_1169 0.40 +0.4
1,323,164 - Psyr_1169 0.40 +0.0
1,323,164 - Psyr_1169 0.40 -0.6
1,323,164 - Psyr_1169 0.40 -0.3
1,323,386 + Psyr_1169 0.60 +0.2
1,323,386 + Psyr_1169 0.60 +0.3
1,323,387 - Psyr_1169 0.60 -1.3
1,323,404 + Psyr_1169 0.62 +0.6
1,323,404 + Psyr_1169 0.62 -1.0
1,323,521 + Psyr_1169 0.72 +0.1

Or see this region's nucleotide sequence