Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1103

Experiment: KB with Berberine 250 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Berberine 250 ug/ml
1,248,268	-				-0.9
1,248,268	-				-0.8
1,248,268	-				-1.0
1,248,458	-				-0.1
1,248,458	-				-0.2
1,248,458	-				+0.1
1,248,561	-				+1.4
1,248,648	-				+0.8
1,248,750	+				+0.6
1,248,751	-				+1.6
1,248,751	-				+0.8
1,248,791	+				-0.7
1,249,067	+		Psyr_1102	0.78	-0.3
1,249,085	+		Psyr_1102	0.83	-0.2
1,249,085	+		Psyr_1102	0.83	+0.3
1,249,085	+		Psyr_1102	0.83	-1.3
1,249,085	+		Psyr_1102	0.83	+0.9
1,249,085	+		Psyr_1102	0.83	+0.6
1,249,085	+		Psyr_1102	0.83	-0.5
1,249,085	+		Psyr_1102	0.83	-1.3
1,249,086	-		Psyr_1102	0.83	-0.7
1,249,086	-		Psyr_1102	0.83	+0.2
1,249,086	-		Psyr_1102	0.83	-0.9
1,249,086	-		Psyr_1102	0.83	+0.5
1,249,086	-		Psyr_1102	0.83	-1.0
1,249,086	-		Psyr_1102	0.83	-0.4
1,249,086	-		Psyr_1102	0.83	-2.2
1,249,086	-		Psyr_1102	0.83	-1.0
1,249,142	+				-0.6
1,249,142	+				-1.7
1,249,142	+				-0.1
1,249,142	+				+0.5
1,249,142	+				-0.1
1,249,143	-				-0.5
1,249,143	-				-0.2
1,249,254	+				+0.4
1,249,254	+				+0.3
1,249,255	-				+0.2
1,249,255	-				-0.1
1,249,255	-				+1.5
1,249,287	+				+1.9
1,249,287	+				+1.9
1,249,287	+				-0.5
1,249,288	-				-3.8
1,249,288	-				-0.4
1,249,321	+		Psyr_1103	0.17	+1.0
1,249,321	+		Psyr_1103	0.17	-0.1
1,249,322	-		Psyr_1103	0.17	+0.9
1,249,322	-		Psyr_1103	0.17	-0.4
1,249,435	+		Psyr_1103	0.41	+0.9
1,249,436	-		Psyr_1103	0.42	-1.5
1,249,436	-		Psyr_1103	0.42	+0.3
1,249,436	-		Psyr_1103	0.42	-0.5
1,249,436	-		Psyr_1103	0.42	-1.9
1,249,436	-		Psyr_1103	0.42	-1.7
1,249,569	+		Psyr_1103	0.71	+0.2
1,249,569	+		Psyr_1103	0.71	-0.2
1,249,570	-		Psyr_1103	0.71	-2.1
1,249,603	-		Psyr_1103	0.78	-0.1
1,249,636	+		Psyr_1103	0.85	-1.3
1,249,636	+		Psyr_1103	0.85	+0.4
1,249,636	+		Psyr_1103	0.85	-2.2
1,249,636	+		Psyr_1103	0.85	-0.4
1,249,636	+		Psyr_1103	0.85	-1.2
1,249,637	-		Psyr_1103	0.85	-0.8
1,249,637	-		Psyr_1103	0.85	-1.1
1,249,637	-		Psyr_1103	0.85	-1.5
1,249,650	+		Psyr_1103	0.88	-0.8
1,249,681	-				+0.0
1,250,136	+		Psyr_1104	0.71	-0.1
1,250,137	-		Psyr_1104	0.71	+1.3
1,250,167	-		Psyr_1104	0.76	-0.5
1,250,167	-		Psyr_1104	0.76	+0.5
1,250,191	-		Psyr_1104	0.80	+0.6
1,250,317	+				-0.9
1,250,318	-				+0.9
1,250,318	-				-1.7
1,250,349	+				+0.3
1,250,349	+				-0.7
1,250,350	-				-0.9
1,250,350	-				+0.6
1,250,559	-				+0.7
1,250,579	+				+1.2
1,250,579	+				-1.2
1,250,580	-				-0.2
1,250,618	+				-0.3
1,250,618	+				-1.4
1,250,618	+				+0.3
1,250,618	+				-0.6
1,250,618	+				-1.7
1,250,618	+				-0.9
1,250,618	+				-0.7
1,250,618	+				+0.2
1,250,618	+				+0.9
1,250,619	-				+0.3
1,250,619	-				+0.3
1,250,619	-				-1.1
1,250,619	-				+0.8
1,250,619	-				+0.9