Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1097

Experiment: KB with Berberine 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1096 and Psyr_1097 are separated by 10 nucleotidesPsyr_1097 and Psyr_1098 are separated by 325 nucleotides Psyr_1096: Psyr_1096 - glycine dehydrogenase (decarboxylating) alpha subunit / glycine dehydrogenase (decarboxylating) beta subunit, at 1,238,600 to 1,241,464 _1096 Psyr_1097: Psyr_1097 - glycine cleavage system H protein, at 1,241,475 to 1,241,858 _1097 Psyr_1098: Psyr_1098 - response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s), at 1,242,184 to 1,244,301 _1098 Position (kb) 1241 1242Strain fitness (log2 ratio) -2 -1 0 1 2at 1240.495 kb on + strand, within Psyr_1096at 1240.495 kb on + strand, within Psyr_1096at 1240.496 kb on - strand, within Psyr_1096at 1240.611 kb on + strand, within Psyr_1096at 1240.611 kb on + strand, within Psyr_1096at 1240.612 kb on - strand, within Psyr_1096at 1240.612 kb on - strand, within Psyr_1096at 1240.673 kb on + strand, within Psyr_1096at 1240.673 kb on + strand, within Psyr_1096at 1240.833 kb on + strand, within Psyr_1096at 1240.834 kb on - strand, within Psyr_1096at 1240.903 kb on + strand, within Psyr_1096at 1241.133 kb on + strand, within Psyr_1096at 1241.199 kb on + strandat 1241.199 kb on + strandat 1241.199 kb on + strandat 1241.199 kb on + strandat 1241.199 kb on + strandat 1241.199 kb on + strandat 1241.199 kb on + strandat 1241.199 kb on + strandat 1241.199 kb on + strandat 1241.199 kb on + strandat 1241.200 kb on - strandat 1241.200 kb on - strandat 1241.200 kb on - strandat 1241.200 kb on - strandat 1241.200 kb on - strandat 1241.200 kb on - strandat 1241.200 kb on - strandat 1241.200 kb on - strandat 1241.200 kb on - strandat 1241.200 kb on - strandat 1241.200 kb on - strandat 1241.200 kb on - strandat 1241.200 kb on - strandat 1241.203 kb on - strandat 1241.203 kb on - strandat 1241.217 kb on + strandat 1241.217 kb on + strandat 1241.217 kb on + strandat 1241.217 kb on + strandat 1241.218 kb on - strandat 1241.218 kb on - strandat 1241.218 kb on - strandat 1241.719 kb on + strand, within Psyr_1097at 1241.719 kb on + strand, within Psyr_1097at 1241.720 kb on - strand, within Psyr_1097at 1241.858 kb on + strandat 1241.858 kb on + strandat 1241.858 kb on + strandat 1241.859 kb on - strandat 1241.901 kb on + strandat 1241.901 kb on + strandat 1241.901 kb on + strandat 1241.902 kb on - strandat 1241.916 kb on - strandat 1241.916 kb on - strandat 1241.964 kb on + strandat 1242.024 kb on - strandat 1242.024 kb on - strandat 1242.024 kb on - strandat 1242.024 kb on - strandat 1242.033 kb on + strandat 1242.141 kb on - strandat 1242.151 kb on - strandat 1242.154 kb on - strandat 1242.257 kb on + strandat 1242.258 kb on - strandat 1242.444 kb on + strand, within Psyr_1098at 1242.462 kb on - strand, within Psyr_1098at 1242.504 kb on + strand, within Psyr_1098at 1242.504 kb on + strand, within Psyr_1098at 1242.805 kb on + strand, within Psyr_1098at 1242.805 kb on + strand, within Psyr_1098at 1242.806 kb on - strand, within Psyr_1098

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Berberine 250 ug/ml
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1,240,495 + Psyr_1096 0.66 +0.7
1,240,495 + Psyr_1096 0.66 +1.5
1,240,496 - Psyr_1096 0.66 -0.2
1,240,611 + Psyr_1096 0.70 -0.1
1,240,611 + Psyr_1096 0.70 -0.1
1,240,612 - Psyr_1096 0.70 -1.2
1,240,612 - Psyr_1096 0.70 +1.2
1,240,673 + Psyr_1096 0.72 +1.5
1,240,673 + Psyr_1096 0.72 +1.3
1,240,833 + Psyr_1096 0.78 -0.2
1,240,834 - Psyr_1096 0.78 -0.3
1,240,903 + Psyr_1096 0.80 -0.9
1,241,133 + Psyr_1096 0.88 +0.5
1,241,199 + +1.3
1,241,199 + -2.7
1,241,199 + -0.3
1,241,199 + +0.9
1,241,199 + -2.1
1,241,199 + +1.7
1,241,199 + +0.5
1,241,199 + +0.5
1,241,199 + -0.2
1,241,199 + +0.5
1,241,200 - +0.2
1,241,200 - -0.8
1,241,200 - +1.4
1,241,200 - -0.0
1,241,200 - +0.6
1,241,200 - +0.2
1,241,200 - -0.3
1,241,200 - -0.9
1,241,200 - -0.3
1,241,200 - -0.5
1,241,200 - -0.7
1,241,200 - -1.0
1,241,200 - +0.1
1,241,203 - -1.2
1,241,203 - +1.9
1,241,217 + -0.7
1,241,217 + +0.4
1,241,217 + -0.5
1,241,217 + +0.3
1,241,218 - +0.7
1,241,218 - +0.3
1,241,218 - +0.4
1,241,719 + Psyr_1097 0.64 +0.3
1,241,719 + Psyr_1097 0.64 -0.6
1,241,720 - Psyr_1097 0.64 -2.3
1,241,858 + -0.1
1,241,858 + +0.3
1,241,858 + +0.9
1,241,859 - -0.4
1,241,901 + +1.7
1,241,901 + +0.4
1,241,901 + -0.3
1,241,902 - +0.4
1,241,916 - +1.3
1,241,916 - +0.4
1,241,964 + -0.3
1,242,024 - -0.9
1,242,024 - +1.3
1,242,024 - -0.2
1,242,024 - -2.3
1,242,033 + +1.1
1,242,141 - +0.3
1,242,151 - -1.2
1,242,154 - -0.1
1,242,257 + -0.3
1,242,258 - -0.2
1,242,444 + Psyr_1098 0.12 +1.2
1,242,462 - Psyr_1098 0.13 -0.9
1,242,504 + Psyr_1098 0.15 +0.0
1,242,504 + Psyr_1098 0.15 -0.5
1,242,805 + Psyr_1098 0.29 +0.2
1,242,805 + Psyr_1098 0.29 -1.1
1,242,806 - Psyr_1098 0.29 +0.4

Or see this region's nucleotide sequence