Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0900

Experiment: KB with Berberine 250 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Berberine 250 ug/ml
1,018,436	-				+0.8
1,018,451	+				-1.2
1,018,451	+				+0.9
1,018,451	+				-0.8
1,018,451	+				-1.4
1,018,452	-				-0.0
1,018,452	-				+0.3
1,018,453	+				-0.7
1,018,453	+				-0.4
1,018,453	+				+0.9
1,018,453	+				-1.1
1,018,453	+				-0.7
1,018,454	-				-0.4
1,018,454	-				+0.9
1,018,454	-				-1.9
1,018,454	-				+0.4
1,018,454	-				-0.3
1,018,454	-				-0.7
1,018,468	-				-0.8
1,018,468	-				-0.5
1,018,468	-				+0.5
1,018,468	-				+0.8
1,018,468	-				+0.5
1,018,468	-				-0.4
1,018,557	-		Psyr_0899	0.17	-0.6
1,018,557	-		Psyr_0899	0.17	-0.3
1,018,649	-		Psyr_0899	0.35	-1.5
1,018,715	+		Psyr_0899	0.47	-1.9
1,018,715	+		Psyr_0899	0.47	+0.4
1,018,716	-		Psyr_0899	0.47	+0.1
1,018,716	-		Psyr_0899	0.47	-0.1
1,018,816	+		Psyr_0899	0.66	-1.0
1,018,816	+		Psyr_0899	0.66	+0.7
1,018,878	+		Psyr_0899	0.78	+0.2
1,018,878	+		Psyr_0899	0.78	+0.3
1,018,878	+		Psyr_0899	0.78	+0.2
1,018,879	-		Psyr_0899	0.78	+1.5
1,018,979	+				-1.3
1,018,985	-				-0.4
1,018,985	-				-0.5
1,018,985	-				-0.2
1,018,985	-				-0.9
1,018,985	-				-1.4
1,018,993	+				+0.5
1,019,057	+				+0.3
1,019,058	-				+0.0
1,019,133	+				+0.6
1,019,133	+				-0.3
1,019,134	-				+0.7
1,019,134	-				+0.1
1,019,134	-				+1.5
1,019,134	-				+0.6
1,019,135	+				-0.7
1,019,135	+				-1.0
1,019,135	+				+0.9
1,019,135	+				-0.2
1,019,135	+				-0.7
1,019,135	+				+0.6
1,019,136	-				+0.7
1,019,136	-				+1.1
1,019,136	-				-0.1
1,019,136	-				+0.9
1,019,136	-				+0.1
1,019,147	+				-0.8
1,019,147	+				+0.9
1,019,147	+				+1.4
1,019,147	+				+0.2
1,019,147	+				+0.7
1,019,147	+				+0.1
1,019,148	-				-0.2
1,019,148	-				-0.1
1,019,177	+		Psyr_0900	0.12	-0.4
1,019,177	+		Psyr_0900	0.12	-1.3
1,019,428	-		Psyr_0900	0.36	-0.7
1,019,439	-		Psyr_0900	0.37	+0.9
1,019,439	-		Psyr_0900	0.37	-0.4
1,019,624	+		Psyr_0900	0.55	+0.9
1,019,624	+		Psyr_0900	0.55	+1.3
1,019,625	-		Psyr_0900	0.55	-0.3
1,019,736	+		Psyr_0900	0.66	+0.3
1,019,736	+		Psyr_0900	0.66	+0.3
1,019,737	-		Psyr_0900	0.66	+0.7
1,019,891	+		Psyr_0900	0.81	-0.6
1,019,892	-		Psyr_0900	0.81	+0.6
1,020,086	-				-0.6
1,020,384	-		Psyr_0901	0.28	+0.2
1,020,533	+		Psyr_0901	0.45	+1.5
1,020,533	+		Psyr_0901	0.45	+1.2
1,020,533	+		Psyr_0901	0.45	+0.9
1,020,533	+		Psyr_0901	0.45	-0.9
1,020,533	+		Psyr_0901	0.45	+0.5
1,020,533	+		Psyr_0901	0.45	+0.1
1,020,533	+		Psyr_0901	0.45	-0.7
1,020,533	+		Psyr_0901	0.45	+1.2
1,020,533	+		Psyr_0901	0.45	+1.3
1,020,533	+		Psyr_0901	0.45	+0.8
1,020,533	+		Psyr_0901	0.45	-2.9
1,020,533	+		Psyr_0901	0.45	+2.2
1,020,533	+		Psyr_0901	0.45	-1.4
1,020,533	+		Psyr_0901	0.45	-2.0
1,020,533	+		Psyr_0901	0.45	+1.3
1,020,534	-		Psyr_0901	0.45	-0.0
1,020,534	-		Psyr_0901	0.45	-0.0
1,020,534	-		Psyr_0901	0.45	+2.1
1,020,534	-		Psyr_0901	0.45	-0.4
1,020,534	-		Psyr_0901	0.45	+0.3
1,020,534	-		Psyr_0901	0.45	+0.0
1,020,534	-		Psyr_0901	0.45	+0.1
1,020,534	-		Psyr_0901	0.45	-0.3
1,020,534	-		Psyr_0901	0.45	-1.1
1,020,534	-		Psyr_0901	0.45	-0.9
1,020,534	-		Psyr_0901	0.45	+0.9
1,020,534	-		Psyr_0901	0.45	-1.9
1,020,534	-		Psyr_0901	0.45	-0.8
1,020,623	+		Psyr_0901	0.55	+0.3
1,020,623	+		Psyr_0901	0.55	-1.1
1,020,630	-		Psyr_0901	0.55	-0.9
1,021,067	+				+0.3
1,021,067	+				+1.9