Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0897

Experiment: KB with Berberine 250 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Berberine 250 ug/ml
1,015,192	+				+0.4
1,015,192	+				-0.5
1,015,193	-				+0.5
1,015,193	-				+0.2
1,015,198	+				+1.1
1,015,198	+				-0.5
1,015,198	+				-0.4
1,015,198	+				-1.2
1,015,244	-				-2.4
1,015,270	+				+0.3
1,015,270	+				+1.2
1,015,270	+				+2.5
1,015,270	+				+0.8
1,015,270	+				-0.3
1,015,270	+				-1.1
1,015,270	+				+0.1
1,015,270	+				+0.9
1,015,270	+				-0.2
1,015,270	+				+0.6
1,015,270	+				-0.0
1,015,270	+				+1.5
1,015,270	+				+0.0
1,015,270	+				+0.0
1,015,270	+				+2.0
1,015,270	+				+1.9
1,015,270	+				-0.3
1,015,271	-				+2.5
1,015,271	-				-1.5
1,015,271	-				-1.4
1,015,271	-				+0.4
1,015,271	-				-0.1
1,015,271	-				-1.2
1,015,271	-				+1.0
1,015,271	-				+0.9
1,015,271	-				+0.9
1,015,271	-				+0.6
1,015,298	+				+1.2
1,015,445	+		Psyr_0896	0.20	-0.6
1,015,446	-		Psyr_0896	0.20	+0.4
1,015,446	-		Psyr_0896	0.20	-0.7
1,015,446	-		Psyr_0896	0.20	-0.1
1,015,446	-		Psyr_0896	0.20	-0.1
1,015,683	-		Psyr_0896	0.46	-0.1
1,015,772	+		Psyr_0896	0.57	+0.7
1,015,773	-		Psyr_0896	0.57	+1.3
1,015,773	-		Psyr_0896	0.57	+0.6
1,016,140	+				-0.1
1,016,140	+				-0.1
1,016,140	+				+0.4
1,016,140	+				-0.3
1,016,140	+				+2.2
1,016,140	+				+0.5
1,016,141	-				-0.3
1,016,141	-				+2.1
1,016,141	-				+1.5
1,016,141	-				+1.1
1,016,141	-				+0.1
1,016,141	-				+1.0
1,016,141	-				+0.6
1,016,525	+		Psyr_0897	0.41	+0.3
1,016,526	-		Psyr_0897	0.41	+1.0
1,016,604	+		Psyr_0897	0.49	+0.7
1,016,812	+		Psyr_0897	0.70	+1.1
1,016,812	+		Psyr_0897	0.70	+1.9
1,016,812	+		Psyr_0897	0.70	+0.7
1,016,813	-		Psyr_0897	0.70	+1.6
1,016,813	-		Psyr_0897	0.70	+0.9
1,016,813	-		Psyr_0897	0.70	-0.3
1,016,813	-		Psyr_0897	0.70	-1.1
1,016,829	+		Psyr_0897	0.72	-0.1
1,016,830	-		Psyr_0897	0.72	+0.9
1,016,830	-		Psyr_0897	0.72	+1.2
1,016,830	-		Psyr_0897	0.72	+0.8
1,016,830	-		Psyr_0897	0.72	+1.3
1,016,830	-		Psyr_0897	0.72	+0.6
1,017,100	+				-1.4
1,017,100	+				+1.0
1,017,100	+				-0.8
1,017,100	+				-0.1
1,017,100	+				+0.4
1,017,100	+				+0.9
1,017,101	-				-1.3
1,017,101	-				-1.1
1,017,228	+				-0.6
1,017,228	+				+0.3
1,017,228	+				+1.1
1,017,228	+				+0.4
1,017,228	+				-0.5
1,017,228	+				-1.4
1,017,228	+				+0.2
1,017,228	+				+0.9
1,017,228	+				-0.2
1,017,229	-				-1.1
1,017,229	-				+0.1
1,017,229	-				+1.5
1,017,229	-				+0.3
1,017,229	-				-0.7
1,017,229	-				-0.1
1,017,229	-				+2.1
1,017,264	+				-0.1
1,017,264	+				+0.9
1,017,264	+				-2.4
1,017,264	+				-1.8
1,017,265	-				+1.6
1,017,265	-				+0.1
1,017,265	-				-1.9
1,017,265	-				+0.6
1,017,265	-				-1.0
1,017,265	-				+0.4
1,017,265	-				+0.7
1,017,265	-				+0.9
1,017,265	-				-0.8
1,017,265	-				-0.4
1,017,265	-				+0.4
1,017,284	+				+1.6
1,017,285	-				-0.8
1,017,285	-				+0.3
1,017,285	-				+1.5
1,017,285	-				+0.3
1,017,525	+		Psyr_0898	0.27	-0.7
1,017,594	+		Psyr_0898	0.32	-0.1
1,017,595	-		Psyr_0898	0.32	-1.0
1,017,595	-		Psyr_0898	0.32	+0.1
1,017,687	+		Psyr_0898	0.39	+0.6
1,017,688	-		Psyr_0898	0.39	-0.4
1,017,787	+		Psyr_0898	0.47	+1.6
1,017,787	+		Psyr_0898	0.47	+0.5
1,017,788	-		Psyr_0898	0.47	-0.6
1,017,788	-		Psyr_0898	0.47	-0.7
1,017,993	+		Psyr_0898	0.63	-0.1
1,017,994	-		Psyr_0898	0.63	+0.7
1,017,994	-		Psyr_0898	0.63	-0.7
1,017,994	-		Psyr_0898	0.63	+0.1