Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0561

Experiment: KB with Berberine 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0560 and Psyr_0561 are separated by 207 nucleotidesPsyr_0561 and Psyr_0562 are separated by 3 nucleotides Psyr_0560: Psyr_0560 - conserved hypothetical protein, at 636,247 to 637,782 _0560 Psyr_0561: Psyr_0561 - chemotaxis motA protein, at 637,990 to 638,841 _0561 Psyr_0562: Psyr_0562 - OmpA/MotB, at 638,845 to 639,894 _0562 Position (kb) 637 638 639Strain fitness (log2 ratio) -2 -1 0 1 2at 637.146 kb on + strand, within Psyr_0560at 637.147 kb on - strand, within Psyr_0560at 637.709 kb on - strandat 637.771 kb on + strandat 637.771 kb on + strandat 637.772 kb on - strandat 637.772 kb on - strandat 637.772 kb on - strandat 637.805 kb on - strandat 637.805 kb on - strandat 637.859 kb on + strandat 637.859 kb on + strandat 637.860 kb on - strandat 637.860 kb on - strandat 637.871 kb on + strandat 637.871 kb on + strandat 637.871 kb on + strandat 637.871 kb on + strandat 637.872 kb on - strandat 637.872 kb on - strandat 637.872 kb on - strandat 637.899 kb on + strandat 637.900 kb on - strandat 637.900 kb on - strandat 637.913 kb on + strandat 637.979 kb on + strandat 637.990 kb on - strandat 637.996 kb on - strandat 638.041 kb on + strandat 638.042 kb on - strandat 638.084 kb on - strand, within Psyr_0561at 638.143 kb on + strand, within Psyr_0561at 638.143 kb on + strand, within Psyr_0561at 638.143 kb on + strand, within Psyr_0561at 638.143 kb on + strand, within Psyr_0561at 638.143 kb on + strand, within Psyr_0561at 638.144 kb on - strand, within Psyr_0561at 638.144 kb on - strand, within Psyr_0561at 638.144 kb on - strand, within Psyr_0561at 638.206 kb on + strand, within Psyr_0561at 638.206 kb on + strand, within Psyr_0561at 638.206 kb on + strand, within Psyr_0561at 638.206 kb on + strand, within Psyr_0561at 638.206 kb on + strand, within Psyr_0561at 638.207 kb on - strand, within Psyr_0561at 638.207 kb on - strand, within Psyr_0561at 638.207 kb on - strand, within Psyr_0561at 638.207 kb on - strand, within Psyr_0561at 638.207 kb on - strand, within Psyr_0561at 638.207 kb on - strand, within Psyr_0561at 638.207 kb on - strand, within Psyr_0561at 638.209 kb on + strand, within Psyr_0561at 638.210 kb on - strand, within Psyr_0561at 638.210 kb on - strand, within Psyr_0561at 638.210 kb on - strand, within Psyr_0561at 638.210 kb on - strand, within Psyr_0561at 638.359 kb on + strand, within Psyr_0561at 638.359 kb on + strand, within Psyr_0561at 638.359 kb on + strand, within Psyr_0561at 638.359 kb on + strand, within Psyr_0561at 638.359 kb on + strand, within Psyr_0561at 638.359 kb on + strand, within Psyr_0561at 638.360 kb on - strand, within Psyr_0561at 638.360 kb on - strand, within Psyr_0561at 638.360 kb on - strand, within Psyr_0561at 638.360 kb on - strand, within Psyr_0561at 638.360 kb on - strand, within Psyr_0561at 638.499 kb on + strand, within Psyr_0561at 638.594 kb on + strand, within Psyr_0561at 638.594 kb on + strand, within Psyr_0561at 638.594 kb on + strand, within Psyr_0561at 638.594 kb on + strand, within Psyr_0561at 638.594 kb on + strand, within Psyr_0561at 638.594 kb on + strand, within Psyr_0561at 638.595 kb on - strand, within Psyr_0561at 638.595 kb on - strand, within Psyr_0561at 638.595 kb on - strand, within Psyr_0561at 638.595 kb on - strand, within Psyr_0561at 638.595 kb on - strand, within Psyr_0561at 638.595 kb on - strand, within Psyr_0561at 638.595 kb on - strand, within Psyr_0561at 638.595 kb on - strand, within Psyr_0561at 638.786 kb on - strandat 638.839 kb on + strandat 638.854 kb on - strandat 639.061 kb on + strand, within Psyr_0562at 639.062 kb on - strand, within Psyr_0562at 639.374 kb on - strand, within Psyr_0562at 639.598 kb on + strand, within Psyr_0562at 639.598 kb on + strand, within Psyr_0562at 639.598 kb on + strand, within Psyr_0562at 639.598 kb on + strand, within Psyr_0562at 639.598 kb on + strand, within Psyr_0562at 639.599 kb on - strand, within Psyr_0562at 639.599 kb on - strand, within Psyr_0562at 639.814 kb on + strandat 639.814 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Berberine 250 ug/ml
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637,146 + Psyr_0560 0.59 +2.6
637,147 - Psyr_0560 0.59 -1.8
637,709 - +0.0
637,771 + -1.0
637,771 + +0.6
637,772 - -0.2
637,772 - -0.1
637,772 - +0.8
637,805 - +0.9
637,805 - +0.3
637,859 + -0.8
637,859 + -1.3
637,860 - +0.3
637,860 - +0.4
637,871 + -0.1
637,871 + +1.2
637,871 + +0.3
637,871 + -1.2
637,872 - +0.9
637,872 - -0.1
637,872 - -0.5
637,899 + -1.3
637,900 - +0.0
637,900 - -0.8
637,913 + +0.3
637,979 + -0.4
637,990 - -0.5
637,996 - -1.8
638,041 + +0.3
638,042 - -0.8
638,084 - Psyr_0561 0.11 -1.3
638,143 + Psyr_0561 0.18 +0.0
638,143 + Psyr_0561 0.18 -0.3
638,143 + Psyr_0561 0.18 -0.6
638,143 + Psyr_0561 0.18 +1.0
638,143 + Psyr_0561 0.18 -1.0
638,144 - Psyr_0561 0.18 -0.7
638,144 - Psyr_0561 0.18 +0.0
638,144 - Psyr_0561 0.18 -0.7
638,206 + Psyr_0561 0.25 +1.2
638,206 + Psyr_0561 0.25 -0.8
638,206 + Psyr_0561 0.25 -1.2
638,206 + Psyr_0561 0.25 +0.5
638,206 + Psyr_0561 0.25 -0.1
638,207 - Psyr_0561 0.25 -0.7
638,207 - Psyr_0561 0.25 -1.2
638,207 - Psyr_0561 0.25 +1.0
638,207 - Psyr_0561 0.25 -1.6
638,207 - Psyr_0561 0.25 +0.4
638,207 - Psyr_0561 0.25 +0.7
638,207 - Psyr_0561 0.25 -0.3
638,209 + Psyr_0561 0.26 -1.0
638,210 - Psyr_0561 0.26 -0.2
638,210 - Psyr_0561 0.26 -0.5
638,210 - Psyr_0561 0.26 -0.5
638,210 - Psyr_0561 0.26 -2.6
638,359 + Psyr_0561 0.43 +0.3
638,359 + Psyr_0561 0.43 +0.3
638,359 + Psyr_0561 0.43 +0.3
638,359 + Psyr_0561 0.43 -1.3
638,359 + Psyr_0561 0.43 +2.0
638,359 + Psyr_0561 0.43 +0.1
638,360 - Psyr_0561 0.43 +1.4
638,360 - Psyr_0561 0.43 -0.9
638,360 - Psyr_0561 0.43 -1.6
638,360 - Psyr_0561 0.43 -1.9
638,360 - Psyr_0561 0.43 -1.0
638,499 + Psyr_0561 0.60 -1.5
638,594 + Psyr_0561 0.71 -1.2
638,594 + Psyr_0561 0.71 -0.1
638,594 + Psyr_0561 0.71 +1.0
638,594 + Psyr_0561 0.71 +1.4
638,594 + Psyr_0561 0.71 -0.4
638,594 + Psyr_0561 0.71 -0.5
638,595 - Psyr_0561 0.71 +1.3
638,595 - Psyr_0561 0.71 -0.2
638,595 - Psyr_0561 0.71 +0.4
638,595 - Psyr_0561 0.71 -0.9
638,595 - Psyr_0561 0.71 +0.2
638,595 - Psyr_0561 0.71 -0.6
638,595 - Psyr_0561 0.71 +0.6
638,595 - Psyr_0561 0.71 +1.0
638,786 - +0.1
638,839 + +0.8
638,854 - +0.4
639,061 + Psyr_0562 0.21 -0.2
639,062 - Psyr_0562 0.21 -0.2
639,374 - Psyr_0562 0.50 -0.3
639,598 + Psyr_0562 0.72 +0.6
639,598 + Psyr_0562 0.72 -0.5
639,598 + Psyr_0562 0.72 +0.5
639,598 + Psyr_0562 0.72 -0.2
639,598 + Psyr_0562 0.72 -0.6
639,599 - Psyr_0562 0.72 -0.5
639,599 - Psyr_0562 0.72 -0.3
639,814 + -1.1
639,814 + +0.2

Or see this region's nucleotide sequence