Experiment: KB with Berberine 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0466 and Psyr_0467 are separated by 225 nucleotides Psyr_0467 and Psyr_0468 are separated by 173 nucleotides Psyr_0468 and Psyr_0469 are separated by 338 nucleotides
Psyr_0466: Psyr_0466 - 3-hydroxyisobutyrate dehydrogenase, at 504,830 to 505,735
_0466
Psyr_0467: Psyr_0467 - Protein of unknown function UPF0153, at 505,961 to 506,416
_0467
Psyr_0468: Psyr_0468 - Aminotransferase, class I and II, at 506,590 to 507,798
_0468
Psyr_0469: Psyr_0469 - dihydroxyacid dehydratase, at 508,137 to 509,984
_0469
Position (kb)
506
507
508 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 505.740 kb on + strand at 505.788 kb on + strand at 505.789 kb on - strand at 506.037 kb on + strand, within Psyr_0467 at 506.037 kb on + strand, within Psyr_0467 at 506.037 kb on + strand, within Psyr_0467 at 506.103 kb on + strand, within Psyr_0467 at 506.103 kb on + strand, within Psyr_0467 at 506.103 kb on + strand, within Psyr_0467 at 506.103 kb on + strand, within Psyr_0467 at 506.103 kb on + strand, within Psyr_0467 at 506.103 kb on + strand, within Psyr_0467 at 506.104 kb on - strand, within Psyr_0467 at 506.104 kb on - strand, within Psyr_0467 at 506.104 kb on - strand, within Psyr_0467 at 506.104 kb on - strand, within Psyr_0467 at 506.104 kb on - strand, within Psyr_0467 at 506.104 kb on - strand, within Psyr_0467 at 506.104 kb on - strand, within Psyr_0467 at 506.136 kb on + strand, within Psyr_0467 at 506.137 kb on - strand, within Psyr_0467 at 506.194 kb on - strand, within Psyr_0467 at 506.358 kb on + strand, within Psyr_0467 at 506.358 kb on + strand, within Psyr_0467 at 506.359 kb on - strand, within Psyr_0467 at 506.359 kb on - strand, within Psyr_0467 at 506.786 kb on + strand, within Psyr_0468 at 506.786 kb on + strand, within Psyr_0468 at 506.787 kb on - strand, within Psyr_0468 at 506.787 kb on - strand, within Psyr_0468 at 506.813 kb on + strand, within Psyr_0468 at 506.813 kb on + strand, within Psyr_0468 at 506.813 kb on + strand, within Psyr_0468 at 506.813 kb on + strand, within Psyr_0468 at 506.813 kb on + strand, within Psyr_0468 at 506.813 kb on + strand, within Psyr_0468 at 506.813 kb on + strand, within Psyr_0468 at 506.813 kb on + strand, within Psyr_0468 at 506.814 kb on - strand, within Psyr_0468 at 506.814 kb on - strand, within Psyr_0468 at 506.814 kb on - strand, within Psyr_0468 at 506.814 kb on - strand, within Psyr_0468 at 506.814 kb on - strand, within Psyr_0468 at 506.814 kb on - strand, within Psyr_0468 at 506.814 kb on - strand, within Psyr_0468 at 506.814 kb on - strand, within Psyr_0468 at 506.814 kb on - strand, within Psyr_0468 at 506.872 kb on + strand, within Psyr_0468 at 506.873 kb on - strand, within Psyr_0468 at 506.971 kb on - strand, within Psyr_0468 at 506.976 kb on - strand, within Psyr_0468 at 506.984 kb on + strand, within Psyr_0468 at 506.985 kb on - strand, within Psyr_0468 at 507.062 kb on + strand, within Psyr_0468 at 507.062 kb on + strand, within Psyr_0468 at 507.062 kb on + strand, within Psyr_0468 at 507.063 kb on - strand, within Psyr_0468 at 507.063 kb on - strand, within Psyr_0468 at 507.063 kb on - strand, within Psyr_0468 at 507.063 kb on - strand, within Psyr_0468 at 507.063 kb on - strand, within Psyr_0468 at 507.063 kb on - strand, within Psyr_0468 at 507.063 kb on - strand, within Psyr_0468 at 507.147 kb on - strand, within Psyr_0468 at 507.191 kb on + strand, within Psyr_0468 at 507.192 kb on - strand, within Psyr_0468 at 507.389 kb on + strand, within Psyr_0468 at 507.389 kb on + strand, within Psyr_0468 at 507.389 kb on + strand, within Psyr_0468 at 507.389 kb on + strand, within Psyr_0468 at 507.389 kb on + strand, within Psyr_0468 at 507.389 kb on + strand, within Psyr_0468 at 507.389 kb on + strand, within Psyr_0468 at 507.389 kb on + strand, within Psyr_0468 at 507.389 kb on + strand, within Psyr_0468 at 507.390 kb on - strand, within Psyr_0468 at 507.390 kb on - strand, within Psyr_0468 at 507.390 kb on - strand, within Psyr_0468 at 507.390 kb on - strand, within Psyr_0468 at 507.390 kb on - strand, within Psyr_0468 at 507.390 kb on - strand, within Psyr_0468 at 507.539 kb on + strand, within Psyr_0468 at 507.540 kb on - strand, within Psyr_0468 at 507.540 kb on - strand, within Psyr_0468 at 507.743 kb on + strand at 507.743 kb on + strand at 507.743 kb on + strand at 507.744 kb on - strand at 507.744 kb on - strand at 507.744 kb on - strand at 507.802 kb on + strand at 507.802 kb on + strand at 507.802 kb on + strand at 507.802 kb on + strand at 507.802 kb on + strand at 507.802 kb on + strand at 507.803 kb on - strand at 507.811 kb on + strand at 507.815 kb on + strand at 507.815 kb on + strand at 507.816 kb on - strand at 507.872 kb on + strand at 507.872 kb on + strand at 507.872 kb on + strand at 507.872 kb on + strand at 507.872 kb on + strand at 507.872 kb on + strand at 507.872 kb on + strand at 507.872 kb on + strand at 507.872 kb on + strand at 507.872 kb on + strand at 507.872 kb on + strand at 507.872 kb on + strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.873 kb on - strand at 507.959 kb on + strand at 508.018 kb on - strand at 508.086 kb on + strand at 508.086 kb on + strand at 508.086 kb on + strand at 508.087 kb on - strand at 508.087 kb on - strand at 508.087 kb on - strand at 508.087 kb on - strand at 508.087 kb on - strand at 508.087 kb on - strand at 508.087 kb on - strand at 508.087 kb on - strand at 508.116 kb on + strand at 508.411 kb on - strand, within Psyr_0469 at 508.411 kb on - strand, within Psyr_0469 at 508.452 kb on + strand, within Psyr_0469 at 508.452 kb on + strand, within Psyr_0469 at 508.452 kb on + strand, within Psyr_0469 at 508.453 kb on - strand, within Psyr_0469 at 508.453 kb on - strand, within Psyr_0469 at 508.453 kb on - strand, within Psyr_0469 at 508.453 kb on - strand, within Psyr_0469 at 508.680 kb on + strand, within Psyr_0469 at 508.681 kb on - strand, within Psyr_0469
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Berberine 250 ug/ml remove 505,740 + -0.6 505,788 + -0.9 505,789 - -0.2 506,037 + Psyr_0467 0.17 -0.8 506,037 + Psyr_0467 0.17 +0.1 506,037 + Psyr_0467 0.17 +0.0 506,103 + Psyr_0467 0.31 +1.2 506,103 + Psyr_0467 0.31 +0.7 506,103 + Psyr_0467 0.31 +3.0 506,103 + Psyr_0467 0.31 -0.7 506,103 + Psyr_0467 0.31 -0.5 506,103 + Psyr_0467 0.31 +0.9 506,104 - Psyr_0467 0.31 -0.6 506,104 - Psyr_0467 0.31 -0.2 506,104 - Psyr_0467 0.31 -0.1 506,104 - Psyr_0467 0.31 +2.0 506,104 - Psyr_0467 0.31 +1.2 506,104 - Psyr_0467 0.31 -1.0 506,104 - Psyr_0467 0.31 +0.0 506,136 + Psyr_0467 0.38 +0.7 506,137 - Psyr_0467 0.39 +1.4 506,194 - Psyr_0467 0.51 -1.6 506,358 + Psyr_0467 0.87 -0.1 506,358 + Psyr_0467 0.87 -0.9 506,359 - Psyr_0467 0.87 -1.7 506,359 - Psyr_0467 0.87 +0.7 506,786 + Psyr_0468 0.16 -0.8 506,786 + Psyr_0468 0.16 -0.2 506,787 - Psyr_0468 0.16 -1.6 506,787 - Psyr_0468 0.16 +1.0 506,813 + Psyr_0468 0.18 +0.4 506,813 + Psyr_0468 0.18 -0.2 506,813 + Psyr_0468 0.18 +0.4 506,813 + Psyr_0468 0.18 +0.7 506,813 + Psyr_0468 0.18 +1.8 506,813 + Psyr_0468 0.18 +1.6 506,813 + Psyr_0468 0.18 +0.0 506,813 + Psyr_0468 0.18 -0.4 506,814 - Psyr_0468 0.19 +1.5 506,814 - Psyr_0468 0.19 +0.5 506,814 - Psyr_0468 0.19 +1.0 506,814 - Psyr_0468 0.19 +1.0 506,814 - Psyr_0468 0.19 -0.1 506,814 - Psyr_0468 0.19 +0.7 506,814 - Psyr_0468 0.19 +0.7 506,814 - Psyr_0468 0.19 +0.0 506,814 - Psyr_0468 0.19 -0.5 506,872 + Psyr_0468 0.23 -0.5 506,873 - Psyr_0468 0.23 -0.4 506,971 - Psyr_0468 0.32 +0.5 506,976 - Psyr_0468 0.32 +0.4 506,984 + Psyr_0468 0.33 +0.9 506,985 - Psyr_0468 0.33 -0.4 507,062 + Psyr_0468 0.39 -0.9 507,062 + Psyr_0468 0.39 +0.7 507,062 + Psyr_0468 0.39 -1.5 507,063 - Psyr_0468 0.39 -0.3 507,063 - Psyr_0468 0.39 -2.0 507,063 - Psyr_0468 0.39 -0.9 507,063 - Psyr_0468 0.39 +0.6 507,063 - Psyr_0468 0.39 -0.3 507,063 - Psyr_0468 0.39 +0.5 507,063 - Psyr_0468 0.39 -0.1 507,147 - Psyr_0468 0.46 +0.4 507,191 + Psyr_0468 0.50 +1.0 507,192 - Psyr_0468 0.50 +0.1 507,389 + Psyr_0468 0.66 +1.0 507,389 + Psyr_0468 0.66 +0.3 507,389 + Psyr_0468 0.66 -1.0 507,389 + Psyr_0468 0.66 +0.0 507,389 + Psyr_0468 0.66 +0.8 507,389 + Psyr_0468 0.66 +0.2 507,389 + Psyr_0468 0.66 +1.0 507,389 + Psyr_0468 0.66 +2.0 507,389 + Psyr_0468 0.66 +1.0 507,390 - Psyr_0468 0.66 +1.3 507,390 - Psyr_0468 0.66 +0.7 507,390 - Psyr_0468 0.66 +0.0 507,390 - Psyr_0468 0.66 +0.4 507,390 - Psyr_0468 0.66 +1.0 507,390 - Psyr_0468 0.66 +0.5 507,539 + Psyr_0468 0.78 -1.3 507,540 - Psyr_0468 0.79 +0.0 507,540 - Psyr_0468 0.79 -0.3 507,743 + +0.6 507,743 + +0.5 507,743 + +0.9 507,744 - +0.6 507,744 - -0.2 507,744 - -2.2 507,802 + +2.0 507,802 + -0.2 507,802 + +0.0 507,802 + +0.7 507,802 + -0.8 507,802 + +0.6 507,803 - -1.1 507,811 + +1.4 507,815 + -0.4 507,815 + -1.8 507,816 - -0.3 507,872 + +1.0 507,872 + +0.0 507,872 + +0.5 507,872 + -1.1 507,872 + -1.2 507,872 + -0.2 507,872 + +1.9 507,872 + -0.3 507,872 + -0.1 507,872 + +0.0 507,872 + +1.2 507,872 + +1.7 507,873 - +1.0 507,873 - -0.7 507,873 - +1.0 507,873 - +1.6 507,873 - +1.7 507,873 - +0.3 507,873 - +0.5 507,873 - +0.6 507,873 - -1.1 507,873 - +0.9 507,873 - -0.3 507,873 - +1.3 507,873 - +0.4 507,873 - -0.3 507,873 - -0.7 507,873 - +1.0 507,873 - +0.6 507,959 + -1.4 508,018 - -0.3 508,086 + -2.1 508,086 + -1.6 508,086 + +0.1 508,087 - -1.1 508,087 - -0.9 508,087 - -2.0 508,087 - +0.6 508,087 - -0.3 508,087 - -1.1 508,087 - -0.4 508,087 - +0.5 508,116 + +1.2 508,411 - Psyr_0469 0.15 +1.1 508,411 - Psyr_0469 0.15 -1.6 508,452 + Psyr_0469 0.17 +0.3 508,452 + Psyr_0469 0.17 +0.0 508,452 + Psyr_0469 0.17 -0.1 508,453 - Psyr_0469 0.17 -1.6 508,453 - Psyr_0469 0.17 -0.4 508,453 - Psyr_0469 0.17 +0.5 508,453 - Psyr_0469 0.17 +0.3 508,680 + Psyr_0469 0.29 +0.6 508,681 - Psyr_0469 0.29 +0.4
Or see this region's nucleotide sequence