Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0468

Experiment: KB with Berberine 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0466 and Psyr_0467 are separated by 225 nucleotidesPsyr_0467 and Psyr_0468 are separated by 173 nucleotidesPsyr_0468 and Psyr_0469 are separated by 338 nucleotides Psyr_0466: Psyr_0466 - 3-hydroxyisobutyrate dehydrogenase, at 504,830 to 505,735 _0466 Psyr_0467: Psyr_0467 - Protein of unknown function UPF0153, at 505,961 to 506,416 _0467 Psyr_0468: Psyr_0468 - Aminotransferase, class I and II, at 506,590 to 507,798 _0468 Psyr_0469: Psyr_0469 - dihydroxyacid dehydratase, at 508,137 to 509,984 _0469 Position (kb) 506 507 508Strain fitness (log2 ratio) -2 -1 0 1 2 3at 505.740 kb on + strandat 505.788 kb on + strandat 505.789 kb on - strandat 506.037 kb on + strand, within Psyr_0467at 506.037 kb on + strand, within Psyr_0467at 506.037 kb on + strand, within Psyr_0467at 506.103 kb on + strand, within Psyr_0467at 506.103 kb on + strand, within Psyr_0467at 506.103 kb on + strand, within Psyr_0467at 506.103 kb on + strand, within Psyr_0467at 506.103 kb on + strand, within Psyr_0467at 506.103 kb on + strand, within Psyr_0467at 506.104 kb on - strand, within Psyr_0467at 506.104 kb on - strand, within Psyr_0467at 506.104 kb on - strand, within Psyr_0467at 506.104 kb on - strand, within Psyr_0467at 506.104 kb on - strand, within Psyr_0467at 506.104 kb on - strand, within Psyr_0467at 506.104 kb on - strand, within Psyr_0467at 506.136 kb on + strand, within Psyr_0467at 506.137 kb on - strand, within Psyr_0467at 506.194 kb on - strand, within Psyr_0467at 506.358 kb on + strand, within Psyr_0467at 506.358 kb on + strand, within Psyr_0467at 506.359 kb on - strand, within Psyr_0467at 506.359 kb on - strand, within Psyr_0467at 506.786 kb on + strand, within Psyr_0468at 506.786 kb on + strand, within Psyr_0468at 506.787 kb on - strand, within Psyr_0468at 506.787 kb on - strand, within Psyr_0468at 506.813 kb on + strand, within Psyr_0468at 506.813 kb on + strand, within Psyr_0468at 506.813 kb on + strand, within Psyr_0468at 506.813 kb on + strand, within Psyr_0468at 506.813 kb on + strand, within Psyr_0468at 506.813 kb on + strand, within Psyr_0468at 506.813 kb on + strand, within Psyr_0468at 506.813 kb on + strand, within Psyr_0468at 506.814 kb on - strand, within Psyr_0468at 506.814 kb on - strand, within Psyr_0468at 506.814 kb on - strand, within Psyr_0468at 506.814 kb on - strand, within Psyr_0468at 506.814 kb on - strand, within Psyr_0468at 506.814 kb on - strand, within Psyr_0468at 506.814 kb on - strand, within Psyr_0468at 506.814 kb on - strand, within Psyr_0468at 506.814 kb on - strand, within Psyr_0468at 506.872 kb on + strand, within Psyr_0468at 506.873 kb on - strand, within Psyr_0468at 506.971 kb on - strand, within Psyr_0468at 506.976 kb on - strand, within Psyr_0468at 506.984 kb on + strand, within Psyr_0468at 506.985 kb on - strand, within Psyr_0468at 507.062 kb on + strand, within Psyr_0468at 507.062 kb on + strand, within Psyr_0468at 507.062 kb on + strand, within Psyr_0468at 507.063 kb on - strand, within Psyr_0468at 507.063 kb on - strand, within Psyr_0468at 507.063 kb on - strand, within Psyr_0468at 507.063 kb on - strand, within Psyr_0468at 507.063 kb on - strand, within Psyr_0468at 507.063 kb on - strand, within Psyr_0468at 507.063 kb on - strand, within Psyr_0468at 507.147 kb on - strand, within Psyr_0468at 507.191 kb on + strand, within Psyr_0468at 507.192 kb on - strand, within Psyr_0468at 507.389 kb on + strand, within Psyr_0468at 507.389 kb on + strand, within Psyr_0468at 507.389 kb on + strand, within Psyr_0468at 507.389 kb on + strand, within Psyr_0468at 507.389 kb on + strand, within Psyr_0468at 507.389 kb on + strand, within Psyr_0468at 507.389 kb on + strand, within Psyr_0468at 507.389 kb on + strand, within Psyr_0468at 507.389 kb on + strand, within Psyr_0468at 507.390 kb on - strand, within Psyr_0468at 507.390 kb on - strand, within Psyr_0468at 507.390 kb on - strand, within Psyr_0468at 507.390 kb on - strand, within Psyr_0468at 507.390 kb on - strand, within Psyr_0468at 507.390 kb on - strand, within Psyr_0468at 507.539 kb on + strand, within Psyr_0468at 507.540 kb on - strand, within Psyr_0468at 507.540 kb on - strand, within Psyr_0468at 507.743 kb on + strandat 507.743 kb on + strandat 507.743 kb on + strandat 507.744 kb on - strandat 507.744 kb on - strandat 507.744 kb on - strandat 507.802 kb on + strandat 507.802 kb on + strandat 507.802 kb on + strandat 507.802 kb on + strandat 507.802 kb on + strandat 507.802 kb on + strandat 507.803 kb on - strandat 507.811 kb on + strandat 507.815 kb on + strandat 507.815 kb on + strandat 507.816 kb on - strandat 507.872 kb on + strandat 507.872 kb on + strandat 507.872 kb on + strandat 507.872 kb on + strandat 507.872 kb on + strandat 507.872 kb on + strandat 507.872 kb on + strandat 507.872 kb on + strandat 507.872 kb on + strandat 507.872 kb on + strandat 507.872 kb on + strandat 507.872 kb on + strandat 507.873 kb on - strandat 507.873 kb on - strandat 507.873 kb on - strandat 507.873 kb on - strandat 507.873 kb on - strandat 507.873 kb on - strandat 507.873 kb on - strandat 507.873 kb on - strandat 507.873 kb on - strandat 507.873 kb on - strandat 507.873 kb on - strandat 507.873 kb on - strandat 507.873 kb on - strandat 507.873 kb on - strandat 507.873 kb on - strandat 507.873 kb on - strandat 507.873 kb on - strandat 507.959 kb on + strandat 508.018 kb on - strandat 508.086 kb on + strandat 508.086 kb on + strandat 508.086 kb on + strandat 508.087 kb on - strandat 508.087 kb on - strandat 508.087 kb on - strandat 508.087 kb on - strandat 508.087 kb on - strandat 508.087 kb on - strandat 508.087 kb on - strandat 508.087 kb on - strandat 508.116 kb on + strandat 508.411 kb on - strand, within Psyr_0469at 508.411 kb on - strand, within Psyr_0469at 508.452 kb on + strand, within Psyr_0469at 508.452 kb on + strand, within Psyr_0469at 508.452 kb on + strand, within Psyr_0469at 508.453 kb on - strand, within Psyr_0469at 508.453 kb on - strand, within Psyr_0469at 508.453 kb on - strand, within Psyr_0469at 508.453 kb on - strand, within Psyr_0469at 508.680 kb on + strand, within Psyr_0469at 508.681 kb on - strand, within Psyr_0469

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Berberine 250 ug/ml
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505,740 + -0.6
505,788 + -0.9
505,789 - -0.2
506,037 + Psyr_0467 0.17 -0.8
506,037 + Psyr_0467 0.17 +0.1
506,037 + Psyr_0467 0.17 +0.0
506,103 + Psyr_0467 0.31 +1.2
506,103 + Psyr_0467 0.31 +0.7
506,103 + Psyr_0467 0.31 +3.0
506,103 + Psyr_0467 0.31 -0.7
506,103 + Psyr_0467 0.31 -0.5
506,103 + Psyr_0467 0.31 +0.9
506,104 - Psyr_0467 0.31 -0.6
506,104 - Psyr_0467 0.31 -0.2
506,104 - Psyr_0467 0.31 -0.1
506,104 - Psyr_0467 0.31 +2.0
506,104 - Psyr_0467 0.31 +1.2
506,104 - Psyr_0467 0.31 -1.0
506,104 - Psyr_0467 0.31 +0.0
506,136 + Psyr_0467 0.38 +0.7
506,137 - Psyr_0467 0.39 +1.4
506,194 - Psyr_0467 0.51 -1.6
506,358 + Psyr_0467 0.87 -0.1
506,358 + Psyr_0467 0.87 -0.9
506,359 - Psyr_0467 0.87 -1.7
506,359 - Psyr_0467 0.87 +0.7
506,786 + Psyr_0468 0.16 -0.8
506,786 + Psyr_0468 0.16 -0.2
506,787 - Psyr_0468 0.16 -1.6
506,787 - Psyr_0468 0.16 +1.0
506,813 + Psyr_0468 0.18 +0.4
506,813 + Psyr_0468 0.18 -0.2
506,813 + Psyr_0468 0.18 +0.4
506,813 + Psyr_0468 0.18 +0.7
506,813 + Psyr_0468 0.18 +1.8
506,813 + Psyr_0468 0.18 +1.6
506,813 + Psyr_0468 0.18 +0.0
506,813 + Psyr_0468 0.18 -0.4
506,814 - Psyr_0468 0.19 +1.5
506,814 - Psyr_0468 0.19 +0.5
506,814 - Psyr_0468 0.19 +1.0
506,814 - Psyr_0468 0.19 +1.0
506,814 - Psyr_0468 0.19 -0.1
506,814 - Psyr_0468 0.19 +0.7
506,814 - Psyr_0468 0.19 +0.7
506,814 - Psyr_0468 0.19 +0.0
506,814 - Psyr_0468 0.19 -0.5
506,872 + Psyr_0468 0.23 -0.5
506,873 - Psyr_0468 0.23 -0.4
506,971 - Psyr_0468 0.32 +0.5
506,976 - Psyr_0468 0.32 +0.4
506,984 + Psyr_0468 0.33 +0.9
506,985 - Psyr_0468 0.33 -0.4
507,062 + Psyr_0468 0.39 -0.9
507,062 + Psyr_0468 0.39 +0.7
507,062 + Psyr_0468 0.39 -1.5
507,063 - Psyr_0468 0.39 -0.3
507,063 - Psyr_0468 0.39 -2.0
507,063 - Psyr_0468 0.39 -0.9
507,063 - Psyr_0468 0.39 +0.6
507,063 - Psyr_0468 0.39 -0.3
507,063 - Psyr_0468 0.39 +0.5
507,063 - Psyr_0468 0.39 -0.1
507,147 - Psyr_0468 0.46 +0.4
507,191 + Psyr_0468 0.50 +1.0
507,192 - Psyr_0468 0.50 +0.1
507,389 + Psyr_0468 0.66 +1.0
507,389 + Psyr_0468 0.66 +0.3
507,389 + Psyr_0468 0.66 -1.0
507,389 + Psyr_0468 0.66 +0.0
507,389 + Psyr_0468 0.66 +0.8
507,389 + Psyr_0468 0.66 +0.2
507,389 + Psyr_0468 0.66 +1.0
507,389 + Psyr_0468 0.66 +2.0
507,389 + Psyr_0468 0.66 +1.0
507,390 - Psyr_0468 0.66 +1.3
507,390 - Psyr_0468 0.66 +0.7
507,390 - Psyr_0468 0.66 +0.0
507,390 - Psyr_0468 0.66 +0.4
507,390 - Psyr_0468 0.66 +1.0
507,390 - Psyr_0468 0.66 +0.5
507,539 + Psyr_0468 0.78 -1.3
507,540 - Psyr_0468 0.79 +0.0
507,540 - Psyr_0468 0.79 -0.3
507,743 + +0.6
507,743 + +0.5
507,743 + +0.9
507,744 - +0.6
507,744 - -0.2
507,744 - -2.2
507,802 + +2.0
507,802 + -0.2
507,802 + +0.0
507,802 + +0.7
507,802 + -0.8
507,802 + +0.6
507,803 - -1.1
507,811 + +1.4
507,815 + -0.4
507,815 + -1.8
507,816 - -0.3
507,872 + +1.0
507,872 + +0.0
507,872 + +0.5
507,872 + -1.1
507,872 + -1.2
507,872 + -0.2
507,872 + +1.9
507,872 + -0.3
507,872 + -0.1
507,872 + +0.0
507,872 + +1.2
507,872 + +1.7
507,873 - +1.0
507,873 - -0.7
507,873 - +1.0
507,873 - +1.6
507,873 - +1.7
507,873 - +0.3
507,873 - +0.5
507,873 - +0.6
507,873 - -1.1
507,873 - +0.9
507,873 - -0.3
507,873 - +1.3
507,873 - +0.4
507,873 - -0.3
507,873 - -0.7
507,873 - +1.0
507,873 - +0.6
507,959 + -1.4
508,018 - -0.3
508,086 + -2.1
508,086 + -1.6
508,086 + +0.1
508,087 - -1.1
508,087 - -0.9
508,087 - -2.0
508,087 - +0.6
508,087 - -0.3
508,087 - -1.1
508,087 - -0.4
508,087 - +0.5
508,116 + +1.2
508,411 - Psyr_0469 0.15 +1.1
508,411 - Psyr_0469 0.15 -1.6
508,452 + Psyr_0469 0.17 +0.3
508,452 + Psyr_0469 0.17 +0.0
508,452 + Psyr_0469 0.17 -0.1
508,453 - Psyr_0469 0.17 -1.6
508,453 - Psyr_0469 0.17 -0.4
508,453 - Psyr_0469 0.17 +0.5
508,453 - Psyr_0469 0.17 +0.3
508,680 + Psyr_0469 0.29 +0.6
508,681 - Psyr_0469 0.29 +0.4

Or see this region's nucleotide sequence