Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0133

Experiment: KB with Berberine 250 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Berberine 250 ug/ml
139,710	-		Psyr_0131	0.18	-0.4
139,710	-		Psyr_0131	0.18	-1.9
139,827	+				-0.7
139,828	-		Psyr_0131	0.36	+0.3
140,014	-		Psyr_0131	0.63	+0.0
140,014	-		Psyr_0131	0.63	-0.5
140,059	+		Psyr_0131	0.70	+0.2
140,059	+		Psyr_0131	0.70	+0.5
140,059	+		Psyr_0131	0.70	+0.1
140,059	+		Psyr_0131	0.70	-1.1
140,059	+		Psyr_0131	0.70	+1.1
140,059	+		Psyr_0131	0.70	-0.2
140,060	-		Psyr_0131	0.70	-1.2
140,205	+				+0.7
140,205	+				-2.4
140,205	+				-1.2
140,205	+				-1.5
140,206	-				+0.1
140,206	-				+0.3
140,206	-				-0.5
140,206	-				+1.2
140,206	-				-0.5
140,206	-				+0.9
140,206	-				-0.2
140,206	-				+0.2
140,206	-				-0.3
140,206	-				+0.0
140,265	+				+0.4
140,305	+				+0.5
140,305	+				-1.1
140,306	-				+0.8
140,306	-				+0.4
140,306	-				-2.2
140,306	-				+1.6
140,306	-				-0.9
140,306	-				-0.2
140,355	+				+0.7
140,355	+				+0.5
140,355	+				+0.9
140,355	+				+0.2
140,355	+				-0.8
140,356	-				+0.5
140,356	-				+0.1
140,356	-				+0.7
140,435	+		Psyr_0132	0.29	-0.6
140,435	+		Psyr_0132	0.29	-0.6
140,436	-		Psyr_0132	0.30	-0.1
140,436	-		Psyr_0132	0.30	+1.9
140,436	-		Psyr_0132	0.30	-0.7
140,436	-		Psyr_0132	0.30	-0.9
140,436	-		Psyr_0132	0.30	+0.4
140,540	+		Psyr_0132	0.71	+0.3
140,593	+				+1.0
140,593	+				+0.7
140,593	+				+0.3
140,593	+				+0.9
140,593	+				+0.1
140,593	+				-0.0
140,593	+				-0.1
140,593	+				-0.2
140,593	+				-0.1
140,593	+				+0.5
140,593	+				+1.6
140,594	-				+0.0
140,594	-				+0.1
140,594	-				-0.4
140,594	-				+1.1
140,594	-				-0.2
140,713	+				+0.5
140,713	+				-0.2
140,714	-				-0.9
140,714	-				+0.9
140,806	+		Psyr_0133	0.24	-0.0
140,807	-		Psyr_0133	0.24	+0.2
140,807	-		Psyr_0133	0.24	-0.7
140,854	+		Psyr_0133	0.34	-0.1
140,854	+		Psyr_0133	0.34	-0.4
140,854	+		Psyr_0133	0.34	-0.1
140,854	+		Psyr_0133	0.34	+0.2
140,855	-		Psyr_0133	0.34	-0.1
140,855	-		Psyr_0133	0.34	-1.0
140,855	-		Psyr_0133	0.34	-1.1
140,855	-		Psyr_0133	0.34	-0.8
140,855	-		Psyr_0133	0.34	-0.7
140,855	-		Psyr_0133	0.34	-2.2
140,855	-		Psyr_0133	0.34	-0.4
140,907	+		Psyr_0133	0.45	-0.7
140,908	-		Psyr_0133	0.45	-1.6
141,071	+		Psyr_0133	0.80	-0.1
141,190	+				+0.3
141,190	+				+0.5
141,191	-				-0.1
141,191	-				+0.9
141,191	-				+0.3
141,191	-				+1.2
141,191	-				-0.1
141,191	-				-0.4
141,191	-				+0.9
141,191	-				-0.1
141,233	-				-0.8
141,233	-				-0.0
141,233	-				+0.9
141,233	-				-1.2
141,233	-				+1.3
141,561	-				-0.0
141,561	-				+0.3
141,813	+				-0.0
141,813	+				-0.9
141,813	+				+1.3
141,813	+				+0.1
141,814	-				+1.7
141,814	-				-1.0
141,814	-				+0.5
141,814	-				-0.4
141,826	+				-0.5
141,881	-				+0.9
141,948	+				-0.1
141,949	-				-1.3
141,952	+				-0.2
141,952	+				+1.0
141,953	-				+0.5
141,980	+				-0.5
141,981	-				+1.3
141,981	-				+0.4
142,033	-				+0.9
142,033	-				+0.0
142,067	+				+0.7
142,067	+				+0.8
142,076	+				-0.4
142,077	-				+0.0
142,077	-				-0.7