Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS20610 and HSERO_RS20615 are separated by 86 nucleotides HSERO_RS20615 and HSERO_RS20620 are separated by 13 nucleotides HSERO_RS20620 and HSERO_RS20625 are separated by 17 nucleotides
HSERO_RS20610: HSERO_RS20610 - phenylacetate-CoA oxygenase subunit PaaA, at 4,727,262 to 4,728,248
_RS20610
HSERO_RS20615: HSERO_RS20615 - phenylacetate-CoA oxygenase subunit PaaB, at 4,728,335 to 4,728,619
_RS20615
HSERO_RS20620: HSERO_RS20620 - phenylacetic acid degradation protein, at 4,728,633 to 4,729,385
_RS20620
HSERO_RS20625: HSERO_RS20625 - phenylacetate-CoA oxygenase, at 4,729,403 to 4,729,927
_RS20625
Position (kb) 4728
4729 Strain fitness (log2 ratio) -1
0
1 at 4727.660 kb on - strand, within HSERO_RS20610 at 4728.076 kb on + strand, within HSERO_RS20610 at 4728.400 kb on + strand, within HSERO_RS20615 at 4728.516 kb on + strand, within HSERO_RS20615 at 4728.749 kb on - strand, within HSERO_RS20620 at 4728.880 kb on + strand, within HSERO_RS20620 at 4729.328 kb on - strand at 4729.379 kb on + strand at 4729.387 kb on - strand at 4729.609 kb on + strand, within HSERO_RS20625
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 4,727,660 - HSERO_RS20610 0.40 +1.2 4,728,076 + HSERO_RS20610 0.82 -0.5 4,728,400 + HSERO_RS20615 0.23 +0.3 4,728,516 + HSERO_RS20615 0.64 +0.8 4,728,749 - HSERO_RS20620 0.15 +1.5 4,728,880 + HSERO_RS20620 0.33 -0.8 4,729,328 - -0.1 4,729,379 + -0.3 4,729,387 - +0.9 4,729,609 + HSERO_RS20625 0.39 -0.3
Or see this region's nucleotide sequence